Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G045200 Populus trichocarpa HOM05D005128 ORTHO05D006227 3.1e-72 275.0 138 100.0
Potri.002G136500 Populus trichocarpa HOM05D005128 ORTHO05D006227 2.5e-69 265.4 138 94.9
ClCG11G006910 Citrullus lanatus HOM05D005128 ORTHO05D006227 9.1e-64 246.9 138 89.1
GSVIVG01018248001 Vitis vinifera HOM05D005128 ORTHO05D006227 1.2e-63 246.5 138 89.1
Nn6g33850 Nelumbo nucifera HOM05D005128 ORTHO05D006227 2.6e-63 245.4 138 87.7
vmacro13485 Vaccinium macrocarpon HOM05D005128 ORTHO05D006227 4.5e-63 244.6 138 88.4
COL.COLO4_12428 Corchorus olitorius HOM05D005128 ORTHO05D006227 5.9e-63 244.2 138 88.4
Thecc.01G392500 Theobroma cacao HOM05D005128 ORTHO05D006227 1.0e-62 243.4 138 88.4
TWI14G0708 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 1.0e-62 243.4 138 88.4
TWI14G1050 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 1.0e-62 243.4 138 88.4
Duzib138G0976 Durio zibethinus HOM05D005128 ORTHO05D006227 1.7e-62 242.7 138 87.7
MELO3C008212.2 Cucumis melo HOM05D005128 ORTHO05D006227 2.2e-62 242.3 138 87.7
Actinidia40389 Actinidia chinensis HOM05D005128 ORTHO05D006227 2.9e-62 241.9 138 87.0
PGR042G1446 Punica granatum HOM05D005128 ORTHO05D006227 3.8e-62 241.5 138 86.2
CSS0048126 Camellia sinensis var. sinensis HOM05D005128 ORTHO05D006227 5.0e-62 241.1 128 92.2
Ciclev10029559m.g Citrus clementina HOM05D005128 ORTHO05D006227 6.5e-62 240.7 138 87.0
Nitab4.5_0002874g0020 Nicotiana tabacum HOM05D005128 ORTHO05D006227 6.5e-62 240.7 133 91.0
Nitab4.5_0003553g0110 Nicotiana tabacum HOM05D005128 ORTHO05D006227 6.5e-62 240.7 133 91.0
Peaxi162Scf00030g00515 Petunia axillaris HOM05D005128 ORTHO05D006227 6.5e-62 240.7 133 90.2
Solyc01g090450.3 Solanum lycopersicum HOM05D005128 ORTHO05D006227 6.5e-62 240.7 133 91.0
TAR374G1117 Trochodendron aralioides HOM05D005128 ORTHO05D006227 6.5e-62 240.7 138 87.0
CsaV3_6G001140 Cucumis sativus L. HOM05D005128 ORTHO05D006227 1.1e-61 240.0 138 87.7
Prupe.2G127400 Prunus persica HOM05D005128 ORTHO05D006227 1.1e-61 240.0 138 87.0
CAN.G362.11 Capsicum annuum HOM05D005128 ORTHO05D006227 1.4e-61 239.6 133 89.5
Sed0016496 Sechium edule HOM05D005128 ORTHO05D006227 1.4e-61 239.6 133 88.7
CiPaw.13G027900 Carya illinoinensis HOM05D005128 ORTHO05D006227 1.9e-61 239.2 138 87.0
Cc02_g24910 Coffea canephora HOM05D005128 ORTHO05D006227 1.9e-61 239.2 133 90.2
Manes.01G272200 Manihot esculenta HOM05D005128 ORTHO05D006227 1.9e-61 239.2 138 86.2
Eucgr.E01576 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.5e-61 238.8 138 85.5
Lsat_1_v5_gn_4_46700 Lactuca sativa HOM05D005128 ORTHO05D006227 3.2e-61 238.4 134 88.8
Sopen01g036240 Solanum pennellii HOM05D005128 ORTHO05D006227 3.2e-61 238.4 133 90.2
Atru.chr5.161 Acer truncatum HOM05D005128 ORTHO05D006227 4.2e-61 238.0 136 87.5
Cfa011089 Carpinus fangiana HOM05D005128 ORTHO05D006227 4.2e-61 238.0 138 87.0
MBI04_g34109_MAGBIO Magnolia biondii HOM05D005128 ORTHO05D006227 7.2e-61 237.3 128 89.1
HanXRQChr05g0138471 Helianthus annuus HOM05D005128 ORTHO05D006227 9.4e-61 236.9 134 88.1
ECA234G3101 Erigeron canadensis HOM05D005128 ORTHO05D006227 1.2e-60 236.5 134 87.3
Cpa.g.sc101.28 Carica papaya HOM05D005128 ORTHO05D006227 2.7e-60 235.3 138 84.1
FvH4_7g09830 Fragaria vesca HOM05D005128 ORTHO05D006227 2.7e-60 235.3 133 88.0
FAN03G0006 Fragaria x ananassa HOM05D005128 ORTHO05D006227 2.7e-60 235.3 133 88.0
FAN10G0506 Fragaria x ananassa HOM05D005128 ORTHO05D006227 2.7e-60 235.3 133 88.0
FAN10G2714 Fragaria x ananassa HOM05D005128 ORTHO05D006227 2.7e-60 235.3 128 89.1
RcHm_v2.0_Chr1g0346991 Rosa chinensis HOM05D005128 ORTHO05D006227 2.7e-60 235.3 133 88.0
TWI59G1443 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 2.7e-60 235.3 133 87.2
QL04p030930 Quercus lobata HOM05D005128 ORTHO05D006227 4.7e-60 234.6 137 86.1
PSO782G3280 Papaver somniferum HOM05D005128 ORTHO05D006227 6.1e-60 234.2 128 89.8
Gohir.D12G099300 Gossypium hirsutum HOM05D005128 ORTHO05D006227 7.9e-60 233.8 138 85.5
Gorai.008G108000 Gossypium raimondii HOM05D005128 ORTHO05D006227 7.9e-60 233.8 138 85.5
Migut.B01551 Erythranthe guttata HOM05D005128 ORTHO05D006227 1.0e-59 233.4 133 87.2
FAN06G2910 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.0e-59 233.4 131 87.8
SGA_v2.0_scaffold52G19215 Striga asiatica HOM05D005128 ORTHO05D006227 1.0e-59 233.4 130 90.0
ATR0057G123 Amborella trichopoda HOM05D005128 ORTHO05D006227 3.0e-59 231.9 138 83.3
MSTRG.20701 Avicennia marina HOM05D005128 ORTHO05D006227 3.0e-59 231.9 133 86.5
FAN06G2047 Fragaria x ananassa HOM05D005128 ORTHO05D006227 3.0e-59 231.9 133 87.2
PSO063G1454 Papaver somniferum HOM05D005128 ORTHO05D006227 5.1e-59 231.1 128 89.1
Aqoxy3G02773 Aquilegia oxysepala HOM05D005128 ORTHO05D006227 8.8e-59 230.3 128 86.7
Migut.A00726 Erythranthe guttata HOM05D005128 ORTHO05D006227 1.1e-58 229.9 133 85.7
MD02G1216700 Malus domestica HOM05D005128 ORTHO05D006227 1.5e-58 229.6 138 84.1
Zm00001eb201920 Zea mays HOM05D005128 ORTHO05D006227 1.5e-58 229.6 123 90.2
Gohir.A12G096500 Gossypium hirsutum HOM05D005128 ORTHO05D006227 2.0e-58 229.2 138 83.3
Sp2g28380 Schrenkiella parvula HOM05D005128 ORTHO05D006227 2.6e-58 228.8 138 83.3
Manes.05G053000 Manihot esculenta HOM05D005128 ORTHO05D006227 4.4e-58 228.0 133 85.7
Thhalv10005116m.g Eutrema salsugineum HOM05D005128 ORTHO05D006227 7.4e-58 227.3 138 82.6
unitig_0.g1324 Utricularia gibba HOM05D005128 ORTHO05D006227 7.4e-58 227.3 128 85.2
THA.LOC104814071 Tarenaya hassleriana HOM05D005128 ORTHO05D006227 1.3e-57 226.5 138 81.9
Os11g0557900 Oryza sativa ssp. japonica HOM05D005128 ORTHO05D006227 1.7e-57 226.1 123 87.8
Aa31LG5G70 Aethionema arabicum HOM05D005128 ORTHO05D006227 3.7e-57 224.9 138 81.9
A06p32130 Brassica napus HOM05D005128 ORTHO05D006227 8.2e-57 223.8 138 81.2
BolC3t18340H Brassica oleracea HOM05D005128 ORTHO05D006227 8.2e-57 223.8 138 81.2
BraA06t26141Z Brassica rapa HOM05D005128 ORTHO05D006227 8.2e-57 223.8 138 81.2
C03p60810 Brassica napus HOM05D005128 ORTHO05D006227 1.8e-56 222.6 138 80.4
CARHR248040 Cardamine hirsuta HOM05D005128 ORTHO05D006227 1.8e-56 222.6 133 84.2
Carub.0006s3721 Capsella rubella HOM05D005128 ORTHO05D006227 2.4e-56 222.2 133 83.5
CDE11G0478 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 2.4e-56 222.2 128 82.8
AT4G01710 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 3.1e-56 221.9 133 83.5
AL6G53500 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 4.1e-56 221.5 133 82.7
HanXRQChr16g0520301 Helianthus annuus HOM05D005128 ORTHO05D006227 5.3e-56 221.1 125 84.8
Lj3g0015662 Lotus japonicus HOM05D005128 ORTHO05D006227 5.3e-56 221.1 138 81.9
Hund11691 Selenicereus undatus HOM05D005128 ORTHO05D006227 5.3e-56 221.1 138 80.4
AUR62023426 Chenopodium quinoa HOM05D005128 ORTHO05D006227 9.1e-56 220.3 138 79.0
Medtr8g006725 Medicago truncatula HOM05D005128 ORTHO05D006227 9.1e-56 220.3 138 81.2
FAN03G2425 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.5e-55 219.5 156 73.7
Ca_14055_v3 Cicer arietinum L. HOM05D005128 ORTHO05D006227 2.0e-55 219.2 138 80.4
Medtr1g112900 Medicago truncatula HOM05D005128 ORTHO05D006227 2.0e-55 219.2 138 80.4
EL10Ac1g00782 Beta vulgaris HOM05D005128 ORTHO05D006227 5.9e-55 217.6 138 78.3
Psat0s118g0040 Pisum sativum HOM05D005128 ORTHO05D006227 5.9e-55 217.6 138 80.4
AUR62013728 Chenopodium quinoa HOM05D005128 ORTHO05D006227 7.7e-55 217.2 138 77.5
Glyma.07G112500 Glycine max HOM05D005128 ORTHO05D006227 7.7e-55 217.2 138 79.7
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 7.7e-55 217.2 132 78.8
VMungo0331G0261 Vigna mungo HOM05D005128 ORTHO05D006227 7.7e-55 217.2 138 79.7
Nn1g00897 Nelumbo nucifera HOM05D005128 ORTHO05D006227 1.0e-54 216.9 138 78.3
Lalb_Chr13g0304581 Lupinus albus HOM05D005128 ORTHO05D006227 1.7e-54 216.1 136 78.7
Lalb_Chr07g0195501 Lupinus albus HOM05D005128 ORTHO05D006227 5.0e-54 214.5 133 79.7
TPR.G33121 Trifolium pratense HOM05D005128 ORTHO05D006227 6.5e-54 214.2 138 79.7
Phvul.010G052100 Phaseolus vulgaris HOM05D005128 ORTHO05D006227 8.5e-54 213.8 138 79.0
PGSC0003DMG400026042 Solanum tuberosum HOM05D005128 ORTHO05D006227 2.5e-53 212.2 186 64.0
Glyma.03G114200 Glycine max HOM05D005128 ORTHO05D006227 3.2e-53 211.8 138 78.3
Carub.0008s2615 Capsella rubella HOM05D005128 ORTHO05D006227 5.2e-51 204.5 138 73.9
AT5G65274 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 1.1e-50 203.4 138 73.2
arahy.Tifrunner.gnm1.ann1.L9RWF4 Arachis hypogaea HOM05D005128 ORTHO05D006227 4.4e-50 201.4 170 65.3
arahy.Tifrunner.gnm1.ann1.V0IP08 Arachis hypogaea HOM05D005128 ORTHO05D006227 1.3e-49 199.9 170 64.7
Gohir.D11G020200 Gossypium hirsutum HOM05D005128 ORTHO05D006227 8.2e-49 197.2 128 75.8
Haze_02808 Corylus avellana HOM05D005128 ORTHO05D006227 1.6e-47 193.0 139 75.5
Gorai.007G021500 Gossypium raimondii HOM05D005128 ORTHO05D006227 3.5e-47 191.8 128 72.7
Gohir.A13G167950 Gossypium hirsutum HOM05D005128 ORTHO05D006227 7.7e-47 190.7 127 72.4
Ah.05g173200 Amaranthus hybridus HOM05D005128 ORTHO05D006227 1.3e-46 189.9 202 54.0
MD07G1103100 Malus domestica HOM05D005128 ORTHO05D006227 1.3e-46 189.9 138 73.2
AagrBONN_evm.TU.Sc2ySwM_369.249 Anthoceros agrestis HOM05D005128 ORTHO05D006227 1.7e-46 189.5 128 68.8
SMO203G0150 Selaginella moellendorffii HOM05D005128 ORTHO05D006227 2.2e-46 189.1 123 71.5
AL8G42840 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 1.9e-45 186.0 133 69.9
Sc02g0003030 Simmondsia chinensis HOM05D005128 ORTHO05D006227 5.5e-45 184.5 104 81.7
Mapoly0006s0266 Marchantia polymorpha HOM05D005128 ORTHO05D006227 2.1e-44 182.6 133 66.2
FAN01G3136 Fragaria x ananassa HOM05D005128 ORTHO05D006227 2.7e-44 182.2 133 72.9
AagrBONN_evm.TU.Sc2ySwM_369.256 Anthoceros agrestis HOM05D005128 ORTHO05D006227 3.6e-44 181.8 132 69.7
SGA_v2.0_scaffold153G36917 Striga asiatica HOM05D005128 ORTHO05D006227 1.5e-42 176.4 130 73.8
SEGI_29435 Sequoiadendron giganteum HOM05D005128 ORTHO05D006227 4.4e-42 174.9 122 68.9
Pp3c15_3940 Physcomitrium patens HOM05D005128 ORTHO05D006227 9.1e-40 167.2 128 62.5
CiPaw.14G021600 Carya illinoinensis HOM05D005128 ORTHO05D006227 5.0e-38 161.4 146 65.1
CDE02G2422 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 2.1e-36 156.0 79 89.9
Eucgr.L02413 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.3e-35 152.5 80 86.2
Dinv44074 Davidia involucrata HOM05D005128 ORTHO05D006227 1.5e-34 149.8 95 81.1
Nitab4.5_0029376g0010 Nicotiana tabacum HOM05D005128 ORTHO05D006227 4.4e-34 148.3 87 87.4
Eucgr.E04335 Eucalyptus grandis HOM05D005128 ORTHO05D006227 5.7e-34 147.9 80 85.0
Oeu064660.1 Olea europaea HOM05D005128 ORTHO05D006227 5.7e-34 147.9 88 86.4
Eucgr.E00550 Eucalyptus grandis HOM05D005128 ORTHO05D006227 7.5e-34 147.5 99 73.7
Sabra14G0033100 Salix brachista HOM05D005128 ORTHO05D006227 2.8e-33 145.6 71 97.2
SalBow7G0891 Salvia bowleyana HOM05D005128 ORTHO05D006227 8.3e-33 144.1 88 84.1
SalBow5G0414 Salvia bowleyana HOM05D005128 ORTHO05D006227 7.0e-32 141.0 88 81.8
Eucgr.H02816 Eucalyptus grandis HOM05D005128 ORTHO05D006227 5.9e-31 137.9 75 84.0
Sed0016493 Sechium edule HOM05D005128 ORTHO05D006227 1.7e-30 136.3 132 59.8
Eucgr.E02797 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.5e-29 133.3 89 77.5
Eucgr.C04409 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.9e-29 132.9 94 71.3
Eucgr.J01567 Eucalyptus grandis HOM05D005128 ORTHO05D006227 3.3e-29 132.1 68 88.2
Eucgr.J01375 Eucalyptus grandis HOM05D005128 ORTHO05D006227 7.2e-29 131.0 92 71.7
Lalb_Chr13g0304531 Lupinus albus HOM05D005128 ORTHO05D006227 2.1e-28 129.4 91 72.5
Lalb_Chr13g0304521 Lupinus albus HOM05D005128 ORTHO05D006227 4.7e-28 128.3 91 71.4
Lalb_Chr13g0304591 Lupinus albus HOM05D005128 ORTHO05D006227 4.7e-28 128.3 91 71.4
Hund07697 Selenicereus undatus HOM05D005128 ORTHO05D006227 3.4e-26 122.1 87 73.6
MD15G1416400 Malus domestica HOM05D005128 ORTHO05D006227 5.7e-26 121.3 107 63.6
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 1.6e-23 113.2 64 79.7
Hund17078 Selenicereus undatus HOM05D005128 ORTHO05D006227 1.4e-19 100.1 83 63.9
Lalb_Chr13g0304551 Lupinus albus HOM05D005128 ORTHO05D006227 2.9e-17 92.4 46 89.1
Gorai.002G193300 Gossypium raimondii HOM05D005128 ORTHO05D006227 3.2e-16 89.0 83 55.4
TPR.G6927 Trifolium pratense HOM05D005128 ORTHO05D006922 5.4e-16 88.2 45 84.4
MD07G1103500 Malus domestica HOM05D005128 ORTHO05D006227 7.3e-13 77.8 56 71.4
Gohir.D01G155933 Gossypium hirsutum HOM05D005128 ORTHO05D006227 1.2e-12 77.0 73 53.4
TPR.G6976 Trifolium pratense HOM05D005128 ORTHO05D006227 8.3e-09 64.3 41 68.3
BcaC03g18322 Brassica carinata HOM05D005128 ORTHO05D006227 1.9e-08 63.2 42 73.8


User provided reference genes

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