Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G014900 Populus trichocarpa HOM05D003723 ORTHO05D004306 0.0e+00 1678.7 819 100.0
Sabra14G0008900 Salix brachista HOM05D003723 ORTHO05D004306 0.0e+00 1615.9 821 96.5
Potri.002G117500 Populus trichocarpa HOM05D003723 ORTHO05D004306 0.0e+00 1525.8 821 91.0
Sabra02G0092000 Salix brachista HOM05D003723 ORTHO05D004306 0.0e+00 1498.8 835 89.1
Manes.02G183600 Manihot esculenta HOM05D003723 ORTHO05D004306 0.0e+00 1377.1 821 82.1
Cfa013762 Carpinus fangiana HOM05D003723 ORTHO05D004306 0.0e+00 1283.9 820 76.1
Haze_22418 Corylus avellana HOM05D003723 ORTHO05D004306 0.0e+00 1258.0 858 72.8
Dinv44943 Davidia involucrata HOM05D003723 ORTHO05D004306 0.0e+00 1254.6 818 75.7
QL93p0154_0009 Quercus lobata HOM05D003723 ORTHO05D004306 0.0e+00 1249.2 819 74.5
QL12p038269 Quercus lobata HOM05D003723 ORTHO05D004306 0.0e+00 1248.0 819 74.4
CiPaw.08G050900 Carya illinoinensis HOM05D003723 ORTHO05D004306 0.0e+00 1247.3 820 74.9
CSS0046104 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 0.0e+00 1239.2 819 74.8
CiPaw.07G173600 Carya illinoinensis HOM05D003723 ORTHO05D004306 0.0e+00 1226.5 820 73.7
TWI56G1015 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 0.0e+00 1225.7 819 72.6
Prupe.1G421300 Prunus persica HOM05D003723 ORTHO05D004306 0.0e+00 1224.5 824 73.7
Lj4A757T32 Lonicera japonica HOM05D003723 ORTHO05D004306 0.0e+00 1223.8 822 71.5
Atru.chr13.849 Acer truncatum HOM05D003723 ORTHO05D004306 0.0e+00 1219.1 827 73.3
TAR628G0363 Trochodendron aralioides HOM05D003723 ORTHO05D004306 0.0e+00 1208.4 817 72.9
Ciclev10000301m.g Citrus clementina HOM05D003723 ORTHO05D004306 0.0e+00 1199.9 818 71.9
CANSAT25G0987 Cannabis sativa HOM05D003723 ORTHO05D004306 0.0e+00 1197.6 816 71.2
Cpa.g.sc142.42 Carica papaya HOM05D003723 ORTHO05D004306 0.0e+00 1194.9 832 71.2
TWI12G0955 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 0.0e+00 1190.3 820 71.3
Eucgr.F02239 Eucalyptus grandis HOM05D003723 ORTHO05D004306 0.0e+00 1183.3 820 70.5
Manes.18G095200 Manihot esculenta HOM05D003723 ORTHO05D004306 0.0e+00 1176.4 719 79.8
Lj4C72T17 Lonicera japonica HOM05D003723 ORTHO05D004306 0.0e+00 1174.1 819 70.2
MELO3C016827.2 Cucumis melo HOM05D003723 ORTHO05D004306 0.0e+00 1172.5 820 70.9
MD15G1067400 Malus domestica HOM05D003723 ORTHO05D004306 0.0e+00 1170.2 830 70.0
CsaV3_4G035140 Cucumis sativus L. HOM05D003723 ORTHO05D004306 0.0e+00 1165.6 820 70.4
ClCG05G020690 Citrullus lanatus HOM05D003723 ORTHO05D004306 0.0e+00 1162.5 822 70.1
MD08G1080300 Malus domestica HOM05D003723 ORTHO05D004306 0.0e+00 1156.4 831 69.3
Cc10_g05060 Coffea canephora HOM05D003723 ORTHO05D004306 0.0e+00 1154.8 820 70.1
Sed0028163 Sechium edule HOM05D003723 ORTHO05D004306 0.0e+00 1151.3 820 68.7
Thecc.04G063000 Theobroma cacao HOM05D003723 ORTHO05D004306 0.0e+00 1138.3 839 67.6
Sopen12g030290 Solanum pennellii HOM05D003723 ORTHO05D004306 0.0e+00 1133.2 819 68.5
PGSC0003DMG400011543 Solanum tuberosum HOM05D003723 ORTHO05D004306 0.0e+00 1132.5 820 68.8
PGR031G2627 Punica granatum HOM05D003723 ORTHO05D004306 0.0e+00 1127.5 821 68.5
Nitab4.5_0002314g0030 Nicotiana tabacum HOM05D003723 ORTHO05D004306 0.0e+00 1124.4 819 68.1
Duzib151G0173 Durio zibethinus HOM05D003723 ORTHO05D004306 0.0e+00 1123.2 839 66.4
Nitab4.5_0003725g0010 Nicotiana tabacum HOM05D003723 ORTHO05D004306 0.0e+00 1121.3 822 68.0
DCAR_009874 Daucus carota HOM05D003723 ORTHO05D004306 0.0e+00 1119.4 835 67.5
MSTRG.24381 Avicennia marina HOM05D003723 ORTHO05D004306 0.0e+00 1119.0 819 68.5
Gohir.D10G114400 Gossypium hirsutum HOM05D003723 ORTHO05D004306 0.0e+00 1119.0 840 65.7
ECA247G0551 Erigeron canadensis HOM05D003723 ORTHO05D004306 0.0e+00 1117.1 814 66.8
Nitab4.5_0009040g0020 Nicotiana tabacum HOM05D003723 ORTHO05D004306 0.0e+00 1115.9 859 65.9
Nitab4.5_0000497g0070 Nicotiana tabacum HOM05D003723 ORTHO05D004306 0.0e+00 1115.5 821 67.5
Gorai.011G126100 Gossypium raimondii HOM05D003723 ORTHO05D004306 0.0e+00 1114.4 840 65.6
Solyc12g088290.2 Solanum lycopersicum HOM05D003723 ORTHO05D004306 0.0e+00 1113.6 819 67.4
Hma1.2p1_0210F.1_g089420 Hydrangea macrophylla HOM05D003723 ORTHO05D004306 0.0e+00 1109.0 765 71.6
SGA_v2.0_scaffold28G11839 Striga asiatica HOM05D003723 ORTHO05D004306 0.0e+00 1106.3 820 66.7
Gohir.A02G089200 Gossypium hirsutum HOM05D003723 ORTHO05D004306 0.0e+00 1101.7 837 65.4
vmacro16900 Vaccinium macrocarpon HOM05D003723 ORTHO05D004306 0.0e+00 1096.3 805 68.1
Peaxi162Scf00160g00521 Petunia axillaris HOM05D003723 ORTHO05D004306 0.0e+00 1090.1 798 68.9
PGSC0003DMG401010623 Solanum tuberosum HOM05D003723 ORTHO05D004306 0.0e+00 1088.6 818 66.3
RcHm_v2.0_Chr6g0309831 Rosa chinensis HOM05D003723 ORTHO05D004306 0.0e+00 1088.2 830 66.9
FvH4_2g32880 Fragaria vesca HOM05D003723 ORTHO05D004306 0.0e+00 1086.2 829 66.7
Aqoxy3G00456 Aquilegia oxysepala HOM05D003723 ORTHO05D004306 0.0e+00 1085.9 817 67.0
AL6G41310 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 0.0e+00 1084.7 832 66.0
FAN24G1723 Fragaria x ananassa HOM05D003723 ORTHO05D004306 0.0e+00 1084.7 829 66.6
Sc02g0007980 Simmondsia chinensis HOM05D003723 ORTHO05D004306 0.0e+00 1083.6 820 64.8
Lalb_Chr22g0355711 Lupinus albus HOM05D003723 ORTHO05D004306 0.0e+00 1083.2 820 65.2
FAN15G1506 Fragaria x ananassa HOM05D003723 ORTHO05D004306 0.0e+00 1082.8 829 66.6
HanXRQChr10g0292141 Helianthus annuus HOM05D003723 ORTHO05D004306 0.0e+00 1082.8 813 65.9
Aa31sc622G20 Aethionema arabicum HOM05D003723 ORTHO05D004306 0.0e+00 1081.6 834 65.9
Solyc04g077680.3 Solanum lycopersicum HOM05D003723 ORTHO05D004306 0.0e+00 1080.9 817 65.9
FAN20G3047 Fragaria x ananassa HOM05D003723 ORTHO05D004306 0.0e+00 1078.5 829 66.3
Sopen04g031320 Solanum pennellii HOM05D003723 ORTHO05D004306 0.0e+00 1077.8 817 65.7
CSS0010741 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 0.0e+00 1075.5 697 76.2
Sp6g10450 Schrenkiella parvula HOM05D003723 ORTHO05D004306 0.0e+00 1075.5 830 65.4
Thhalv10028433m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 5.6e-312 1073.9 831 65.8
GSVIVG01009321001 Vitis vinifera HOM05D003723 ORTHO05D004306 1.7e-311 1072.4 818 67.2
AT4G07410 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 2.8e-311 1071.6 832 65.7
Gohir.D02G112100 Gossypium hirsutum HOM05D003723 ORTHO05D004306 3.9e-311 1071.2 837 64.3
HanXRQChr10g0292161 Helianthus annuus HOM05D003723 ORTHO05D004306 7.2e-310 1067.0 815 65.0
Lalb_Chr14g0368121 Lupinus albus HOM05D003723 ORTHO05D004306 9.4e-310 1066.6 823 64.4
BcaB01g02881 Brassica carinata HOM05D003723 ORTHO05D004306 1.6e-309 1065.8 832 65.7
AUR62022465 Chenopodium quinoa HOM05D003723 ORTHO05D004306 1.6e-309 1065.8 832 63.2
Gorai.005G127000 Gossypium raimondii HOM05D003723 ORTHO05D004306 1.6e-309 1065.8 865 62.4
Carub.0006s2652 Capsella rubella HOM05D003723 ORTHO05D004306 2.7e-309 1065.1 830 65.3
CARHR287080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 3.6e-309 1064.7 823 65.7
Peaxi162Scf00081g02729 Petunia axillaris HOM05D003723 ORTHO05D004306 8.0e-309 1063.5 874 63.0
AUR62043254 Chenopodium quinoa HOM05D003723 ORTHO05D004306 2.3e-308 1062.0 819 63.7
BolC3t15689H Brassica oleracea HOM05D003723 ORTHO05D004306 1.2e-307 1059.7 835 64.4
C03p33700 Brassica napus HOM05D003723 ORTHO05D004306 1.5e-307 1059.3 835 64.4
Oeu014279.1 Olea europaea HOM05D003723 ORTHO05D004306 2.0e-307 1058.9 772 69.7
Glyma.14G089042 Glycine max HOM05D003723 ORTHO05D004306 9.8e-307 1056.6 827 64.3
EL10Ac1g02364 Beta vulgaris HOM05D003723 ORTHO05D004306 1.1e-305 1053.1 823 62.6
A03p27910 Brassica napus HOM05D003723 ORTHO05D004306 1.8e-305 1052.4 831 64.5
arahy.Tifrunner.gnm1.ann1.82WHW6 Arachis hypogaea HOM05D003723 ORTHO05D004306 2.4e-305 1052.0 813 63.7
BcaC01g04785 Brassica carinata HOM05D003723 ORTHO05D004306 1.2e-304 1049.7 833 64.1
BraA03t12004Z Brassica rapa HOM05D003723 ORTHO05D004306 1.6e-304 1049.3 831 64.3
Lj5g0007294 Lotus japonicus HOM05D003723 ORTHO05D004306 2.0e-304 1048.9 815 64.3
FAN27G2988 Fragaria x ananassa HOM05D003723 ORTHO05D004306 2.7e-304 1048.5 829 65.3
PSO541G5768 Papaver somniferum HOM05D003723 ORTHO05D004306 2.3e-303 1045.4 814 64.0
AL1G40900 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 2.9e-303 1045.0 825 64.8
Sp1g23720 Schrenkiella parvula HOM05D003723 ORTHO05D004306 1.6e-301 1039.3 829 64.3
AT1G27470 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 4.7e-301 1037.7 824 64.6
arahy.Tifrunner.gnm1.ann1.YU9IEB Arachis hypogaea HOM05D003723 ORTHO05D004306 6.1e-301 1037.3 819 63.1
Carub.0001s2603 Capsella rubella HOM05D003723 ORTHO05D004306 1.0e-300 1036.6 824 64.0
Thhalv10006817m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 7.5e-299 1030.4 832 63.9
Glyma.17G233900 Glycine max HOM05D003723 ORTHO05D004306 2.8e-298 1028.5 828 62.7
SalBow2G1921 Salvia bowleyana HOM05D003723 ORTHO05D004306 5.4e-297 1024.2 772 66.2
VMungo0647G0070 Vigna mungo HOM05D003723 ORTHO05D004306 6.6e-295 1017.3 827 62.6
Phvul.001G028900 Phaseolus vulgaris HOM05D003723 ORTHO05D004306 1.1e-294 1016.5 823 62.8
COL.COLO4_29256 Corchorus olitorius HOM05D003723 ORTHO05D004306 8.0e-293 1010.4 830 61.3
BcaC01g06947 Brassica carinata HOM05D003723 ORTHO05D004306 1.8e-292 1009.2 820 63.5
DCAR_012822 Daucus carota HOM05D003723 ORTHO05D004306 6.8e-292 1007.3 825 62.3
BcaC05g26751 Brassica carinata HOM05D003723 ORTHO05D004306 3.4e-291 1005.0 829 62.6
CARHR027080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 3.4e-291 1005.0 826 62.8
BcaC05g26567 Brassica carinata HOM05D003723 ORTHO05D004306 7.5e-291 1003.8 823 62.7
A08p26240 Brassica napus HOM05D003723 ORTHO05D004306 1.3e-290 1003.0 823 62.8
BraA08t34575Z Brassica rapa HOM05D003723 ORTHO05D004306 6.4e-290 1000.7 823 62.8
Gohir.A10G151900 Gossypium hirsutum HOM05D003723 ORTHO05D004306 8.3e-290 1000.3 840 61.4
PSO017G5808 Papaver somniferum HOM05D003723 ORTHO05D004306 1.1e-289 1000.0 816 61.6
Sed0011873 Sechium edule HOM05D003723 ORTHO05D004306 1.1e-289 1000.0 726 68.2
BcaC01g01603 Brassica carinata HOM05D003723 ORTHO05D004306 2.4e-289 998.8 822 62.3
Hund05292 Selenicereus undatus HOM05D003723 ORTHO05D004306 7.8e-288 993.8 732 65.7
THA.LOC104824968 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 1.7e-287 992.6 840 61.1
C03p74200 Brassica napus HOM05D003723 ORTHO05D004306 2.3e-287 992.3 823 62.0
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 2.3e-287 992.3 814 63.0
SGA_v2.0_scaffold152G36813 Striga asiatica HOM05D003723 ORTHO05D004306 4.3e-286 988.0 820 61.2
Aa31LG7G10210 Aethionema arabicum HOM05D003723 ORTHO05D004306 1.2e-285 986.5 831 60.5
DCAR_004814 Daucus carota HOM05D003723 ORTHO05D004306 1.8e-284 982.6 866 59.1
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 1.2e-283 979.9 811 62.9
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 9.8e-283 976.9 815 62.2
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 9.8e-283 976.9 809 62.8
Actinidia10210 Actinidia chinensis HOM05D003723 ORTHO05D004306 2.9e-282 975.3 625 75.8
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 4.7e-277 958.0 816 60.9
THA.LOC104825785 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 5.2e-276 954.5 831 59.3
Ah.05g167030 Amaranthus hybridus HOM05D003723 ORTHO05D004306 9.9e-275 950.3 777 61.9
Ca_13209_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 6.0e-272 941.0 819 58.7
Psat6g017680 Pisum sativum HOM05D003723 ORTHO05D004306 5.6e-270 934.5 821 59.0
Os03g0735100 Oryza sativa ssp. japonica HOM05D003723 ORTHO05D004306 4.7e-269 931.4 814 58.8
CDE07G0463 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 9.9e-267 923.7 767 59.7
Zm00001eb056350 Zea mays HOM05D003723 ORTHO05D004306 4.0e-260 901.7 817 56.4
Zm00001eb215430 Zea mays HOM05D003723 ORTHO05D004306 1.2e-259 900.2 819 57.0
ATR0739G177 Amborella trichopoda HOM05D003723 ORTHO05D004306 6.4e-258 894.4 828 56.6
TPR.G12983 Trifolium pratense HOM05D003723 ORTHO05D004306 8.4e-258 894.0 827 56.3
unitig_0.g1045 Utricularia gibba HOM05D003723 ORTHO05D004306 2.1e-256 889.4 820 56.8
TPR.G32238 Trifolium pratense HOM05D003723 ORTHO05D004306 1.5e-251 873.2 831 56.3
Medtr8g014080 Medicago truncatula HOM05D003723 ORTHO05D004306 3.3e-246 855.5 811 55.7
Medtr1g017880 Medicago truncatula HOM05D003723 ORTHO05D004306 1.2e-243 847.0 827 54.2
HPP92_003353 Vanilla planifolia HOM05D003723 ORTHO05D004306 9.0e-236 820.8 693 60.6
Ca_23258_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 4.4e-198 695.7 714 53.9
Lsat_1_v5_gn_1_1120 Lactuca sativa HOM05D003723 ORTHO05D004306 6.3e-197 691.8 591 60.9
Dinv39214 Davidia involucrata HOM05D003723 ORTHO05D004306 1.3e-186 657.5 422 77.0
Mapoly0027s0127 Marchantia polymorpha HOM05D003723 ORTHO05D004306 1.4e-180 637.5 899 40.5
SMO367G0860 Selaginella moellendorffii HOM05D003723 ORTHO05D004306 1.6e-168 597.4 854 39.5
Pp3c22_14490 Physcomitrium patens HOM05D003723 ORTHO05D004306 1.1e-167 594.7 912 40.0
Pp3c19_13580 Physcomitrium patens HOM05D003723 ORTHO05D004306 6.8e-159 565.5 929 38.3
CDE04G2329 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 3.9e-146 523.1 403 64.3
CBR_g57871 Chara braunii HOM05D003723 ORTHO05D004306 4.0e-143 513.1 903 35.9
DCAR_032227 Daucus carota HOM05D003723 ORTHO05D004306 1.3e-133 481.5 457 56.7
Oeu036976.1 Olea europaea HOM05D003723 ORTHO05D004306 1.0e-125 455.3 318 71.4
AagrBONN_evm.TU.Sc2ySwM_344.864 Anthoceros agrestis HOM05D003723 ORTHO05D004306 5.7e-121 439.5 642 40.3
Actinidia19301 Actinidia chinensis HOM05D003723 ORTHO05D004306 4.1e-119 433.3 295 73.2
SEGI_24646 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 1.3e-114 418.3 513 45.8
Actinidia19302 Actinidia chinensis HOM05D003723 ORTHO05D004306 9.7e-105 385.6 248 73.8
Lsat_1_v5_gn_1_440 Lactuca sativa HOM05D003723 ORTHO05D004306 5.0e-93 346.7 260 66.5
SEGI_10786 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 3.5e-86 323.9 318 53.1
Pp3c18_6690 Physcomitrium patens HOM05D003723 ORTHO05D004306 1.4e-82 312.0 682 32.6
Lsat_1_v5_gn_0_45940 Lactuca sativa HOM05D003723 ORTHO05D004306 5.7e-81 306.6 218 65.6
DCAR_032226 Daucus carota HOM05D003723 ORTHO05D004306 1.5e-76 292.0 259 56.4
Dinv39213 Davidia involucrata HOM05D003723 ORTHO05D004306 3.0e-74 284.3 156 86.5
Oeu053086.3 Olea europaea HOM05D003723 ORTHO05D004306 2.6e-65 254.6 261 57.1
MCO10G249 Micromonas commoda HOM05D003723 ORTHO05D004306 7.0e-63 246.5 933 24.1
HanXRQChr14g0443971 Helianthus annuus HOM05D003723 ORTHO05D004306 1.5e-49 202.2 207 53.1
CDE04G2756 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 2.0e-49 201.8 187 55.1
TAR376G0468 Trochodendron aralioides HOM05D003723 ORTHO05D004306 5.8e-49 200.3 119 81.5
Cre13.g606850 Chlamydomonas reinhardtii HOM05D003723 ORTHO05D004306 2.9e-48 198.0 907 23.7
Zm00001eb382220 Zea mays HOM05D002544 ORTHO05D007856 1.2e-46 192.6 208 51.0
Zm00001eb280470 Zea mays HOM05D003723 ORTHO05D004306 1.5e-44 185.7 198 52.5
PRCOL_00004412 Prasinoderma coloniale HOM05D003723 ORTHO05D004306 6.8e-42 176.8 458 31.0
TAR376G0760 Trochodendron aralioides HOM05D003723 ORTHO05D004306 6.4e-40 170.2 104 76.9
TAR376G0365 Trochodendron aralioides HOM05D003723 ORTHO05D004306 1.1e-36 159.5 107 73.8
CSS0002287 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 1.2e-33 149.4 104 67.3
Cfa027112 Carpinus fangiana HOM05D003723 ORTHO05D004306 3.4e-33 147.9 632 25.0
CSS0021932 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 9.9e-33 146.4 104 66.3
Migut.N02791 Erythranthe guttata HOM05D003723 ORTHO05D004306 2.9e-32 144.8 99 71.7
CSS0044410 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 4.9e-32 144.1 104 65.4
CSS0047227 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 1.9e-31 142.1 104 64.4
Psat7g031120 Pisum sativum HOM05D003723 ORTHO05D004306 7.1e-23 113.6 99 62.6
HanXRQChr15g0495401 Helianthus annuus HOM05D003723 ORTHO05D004306 1.2e-22 112.8 104 58.7
CSS0041779 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 7.9e-22 110.2 104 54.8
CSS0003704 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 5.3e-18 97.4 104 51.0
CAN.G400.11 Capsicum annuum HOM05D002670 ORTHO05D000002 4.2e-07 61.2 103 35.9


User provided reference genes

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