Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.013G080200 Populus trichocarpa HOM05D005180 ORTHO05D006136 4.2e-125 451.4 241 100.0
Sabra13G0072900 Salix brachista HOM05D005180 ORTHO05D006136 3.2e-117 425.2 237 95.4
Lalb_Chr20g0121321 Lupinus albus HOM05D005180 ORTHO05D006136 4.6e-103 378.3 240 81.2
vmacro07270 Vaccinium macrocarpon HOM05D005180 ORTHO05D006136 3.3e-101 372.1 239 81.2
MELO3C021887.2 Cucumis melo HOM05D005180 ORTHO05D006136 2.3e-99 365.9 240 80.0
Nitab4.5_0000428g0030 Nicotiana tabacum HOM05D005180 ORTHO05D006136 2.3e-99 365.9 242 79.8
Potri.013G082900 Populus trichocarpa HOM05D005180 ORTHO05D006136 2.3e-99 365.9 194 100.0
Ciclev10021949m.g Citrus clementina HOM05D005180 ORTHO05D006136 3.1e-99 365.5 241 81.7
CsaV3_2G036420 Cucumis sativus L. HOM05D005180 ORTHO05D006136 2.6e-98 362.5 240 79.2
Manes.08G064700 Manihot esculenta HOM05D005180 ORTHO05D006136 5.8e-98 361.3 241 80.9
Sed0003176 Sechium edule HOM05D005180 ORTHO05D006136 2.2e-97 359.4 240 77.5
Gorai.003G054000 Gossypium raimondii HOM05D005180 ORTHO05D006136 1.1e-96 357.1 239 79.5
Duzib106G0272 Durio zibethinus HOM05D005180 ORTHO05D006136 1.9e-96 356.3 239 80.3
Prupe.8G027400 Prunus persica HOM05D005180 ORTHO05D006136 1.9e-96 356.3 241 78.4
Gohir.D03G052000 Gossypium hirsutum HOM05D005180 ORTHO05D006136 1.6e-95 353.2 239 78.7
MD10G1023900 Malus domestica HOM05D005180 ORTHO05D006136 1.0e-94 350.5 239 77.8
TPR.G11750 Trifolium pratense HOM05D005180 ORTHO05D006136 1.3e-94 350.1 236 77.5
GSVIVG01037378001 Vitis vinifera HOM05D005180 ORTHO05D006136 1.3e-94 350.1 241 78.0
HanXRQChr01g0020751 Helianthus annuus HOM05D005180 ORTHO05D006136 1.7e-94 349.7 245 76.7
Nitab4.5_0002915g0060 Nicotiana tabacum HOM05D005180 ORTHO05D006136 2.3e-94 349.4 242 76.4
RcHm_v2.0_Chr6g0275831 Rosa chinensis HOM05D005180 ORTHO05D006136 3.9e-94 348.6 239 77.0
Eucgr.D02531 Eucalyptus grandis HOM05D005180 ORTHO05D006136 6.6e-94 347.8 206 86.4
ClCG09G016930 Citrullus lanatus HOM05D005180 ORTHO05D006136 1.1e-93 347.1 240 76.7
FAN20G0932 Fragaria x ananassa HOM05D005180 ORTHO05D006136 2.5e-93 345.9 240 77.5
Sc24g0001580 Simmondsia chinensis HOM05D005180 ORTHO05D006136 2.5e-93 345.9 241 75.1
COL.COLO4_15239 Corchorus olitorius HOM05D005180 ORTHO05D006136 4.3e-93 345.1 239 77.4
Aqoxy5G01637 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 5.6e-93 344.7 241 74.3
Thecc.05G216000 Theobroma cacao HOM05D005180 ORTHO05D006136 5.6e-93 344.7 239 78.2
FAN27G2246 Fragaria x ananassa HOM05D005180 ORTHO05D006136 7.3e-93 344.4 240 76.7
FvH4_2g13990 Fragaria vesca HOM05D005180 ORTHO05D006136 1.2e-92 343.6 240 77.1
FAN15G0398 Fragaria x ananassa HOM05D005180 ORTHO05D006136 1.2e-92 343.6 240 76.7
CAN.G714.6 Capsicum annuum HOM05D005180 ORTHO05D006136 1.6e-92 343.2 242 74.8
Ca_00419_v3 Cicer arietinum L. HOM05D005180 ORTHO05D006136 1.6e-92 343.2 238 76.1
VMungo0540G0753 Vigna mungo HOM05D005180 ORTHO05D006136 2.1e-92 342.8 238 75.6
Haze_00396 Corylus avellana HOM05D005180 ORTHO05D006136 4.7e-92 341.7 241 75.5
FAN24G0415 Fragaria x ananassa HOM05D005180 ORTHO05D006136 4.7e-92 341.7 240 76.7
QL09p023193 Quercus lobata HOM05D005180 ORTHO05D006136 4.7e-92 341.7 240 75.8
Solyc01g008990.4 Solanum lycopersicum HOM05D005180 ORTHO05D006136 6.2e-92 341.3 241 74.3
Lsat_1_v5_gn_1_93761 Lactuca sativa HOM05D005180 ORTHO05D006136 8.1e-92 340.9 249 73.9
PGR004G2116 Punica granatum HOM05D005180 ORTHO05D006136 8.1e-92 340.9 250 74.0
Actinidia07010 Actinidia chinensis HOM05D005180 ORTHO05D006136 1.4e-91 340.1 241 75.5
Glyma.15G080600 Glycine max HOM05D005180 ORTHO05D006136 1.8e-91 339.7 239 75.3
Peaxi162Scf00050g01910 Petunia axillaris HOM05D005180 ORTHO05D006136 1.8e-91 339.7 242 74.8
Phvul.006G178100 Phaseolus vulgaris HOM05D005180 ORTHO05D006136 1.8e-91 339.7 238 75.2
Sopen01g004480 Solanum pennellii HOM05D005180 ORTHO05D006136 1.8e-91 339.7 242 74.0
PSO063G1868 Papaver somniferum HOM05D005180 ORTHO05D006136 2.3e-91 339.3 246 73.6
PGSC0003DMG400022705 Solanum tuberosum HOM05D005180 ORTHO05D006136 3.1e-91 339.0 242 74.0
Hma1.2p1_1711F.1_g298680 Hydrangea macrophylla HOM05D005180 ORTHO05D006136 4.0e-91 338.6 241 74.3
Rhsim13G0203300 Rhododendron simsii HOM05D005180 ORTHO05D006136 5.2e-91 338.2 241 75.1
CiPaw.06G034400 Carya illinoinensis HOM05D005180 ORTHO05D006136 8.9e-91 337.4 239 76.2
Gohir.A02G141500 Gossypium hirsutum HOM05D005180 ORTHO05D006136 8.9e-91 337.4 239 76.6
CAN.G1085.4 Capsicum annuum HOM05D005180 ORTHO05D006136 2.6e-90 335.9 240 74.2
arahy.Tifrunner.gnm1.ann1.F0IXSY Arachis hypogaea HOM05D005180 ORTHO05D006136 3.4e-90 335.5 241 74.7
arahy.Tifrunner.gnm1.ann1.ZTB6Z9 Arachis hypogaea HOM05D005180 ORTHO05D006136 3.4e-90 335.5 241 74.7
MSTRG.18479 Avicennia marina HOM05D005180 ORTHO05D006136 3.4e-90 335.5 241 74.7
Psat1g199720 Pisum sativum HOM05D005180 ORTHO05D006136 4.4e-90 335.1 236 75.8
Duzib177G0947 Durio zibethinus HOM05D005180 ORTHO05D006136 5.8e-90 334.7 239 76.6
arahy.Tifrunner.gnm1.ann1.ZY7ZXH Arachis hypogaea HOM05D005180 ORTHO05D006136 7.5e-90 334.3 241 73.9
Cfa016051 Carpinus fangiana HOM05D005180 ORTHO05D006136 7.5e-90 334.3 241 74.3
ECA240G0118 Erigeron canadensis HOM05D005180 ORTHO05D006136 9.8e-90 334.0 240 72.9
Rhsim04G0005300 Rhododendron simsii HOM05D005180 ORTHO05D006136 1.3e-89 333.6 241 73.9
SGA_v2.0_scaffold29G12131 Striga asiatica HOM05D005180 ORTHO05D006136 1.3e-89 333.6 243 73.3
CSS0011166 Camellia sinensis var. sinensis HOM05D005180 ORTHO05D006136 1.7e-89 333.2 241 73.0
Dinv35897 Davidia involucrata HOM05D005180 ORTHO05D006136 4.9e-89 331.6 228 78.1
Sopen11g029830 Solanum pennellii HOM05D005180 ORTHO05D006136 4.9e-89 331.6 241 73.0
Nitab4.5_0002161g0010 Nicotiana tabacum HOM05D005180 ORTHO05D006136 8.3e-89 330.9 241 73.4
Cc01_g07100 Coffea canephora HOM05D005180 ORTHO05D006136 1.9e-88 329.7 241 73.0
Nitab4.5_0002567g0080 Nicotiana tabacum HOM05D005180 ORTHO05D006136 5.4e-88 328.2 241 72.2
Atru.chr5.727 Acer truncatum HOM05D005180 ORTHO05D006136 7.1e-88 327.8 201 85.6
SalBow6G2568 Salvia bowleyana HOM05D005180 ORTHO05D006136 7.1e-88 327.8 241 73.4
AUR62005241 Chenopodium quinoa HOM05D005180 ORTHO05D006136 1.6e-87 326.6 241 69.7
unitig_62.g23868 Utricularia gibba HOM05D005180 ORTHO05D006136 1.6e-87 326.6 242 71.9
unitig_64.g29770 Utricularia gibba HOM05D005180 ORTHO05D006136 1.6e-87 326.6 242 71.9
Oeu032043.1 Olea europaea HOM05D005180 ORTHO05D006136 3.5e-87 325.5 206 82.0
TWI32G1096 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 4.6e-87 325.1 204 81.9
Medtr2g015520 Medicago truncatula HOM05D005180 ORTHO05D006136 6.0e-87 324.7 236 73.3
arahy.Tifrunner.gnm1.ann1.T3IE7U Arachis hypogaea HOM05D005180 ORTHO05D006136 1.0e-86 323.9 233 73.8
Glyma.13G232100 Glycine max HOM05D005180 ORTHO05D006136 1.0e-86 323.9 240 72.5
TAR374G0042 Trochodendron aralioides HOM05D005180 ORTHO05D006136 2.3e-86 322.8 241 72.6
PGSC0003DMG400027389 Solanum tuberosum HOM05D005180 ORTHO05D006136 3.0e-86 322.4 239 73.2
Ah.04g161260 Amaranthus hybridus HOM05D005180 ORTHO05D006136 3.9e-86 322.0 241 69.7
TWI60G1377 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 5.1e-86 321.6 203 81.3
AL6G27810 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 1.1e-85 320.5 237 73.4
Thhalv10021437m.g Eutrema salsugineum HOM05D005180 ORTHO05D006136 1.1e-85 320.5 242 69.8
Oeu025945.2 Olea europaea HOM05D005180 ORTHO05D006136 1.5e-85 320.1 199 82.4
AL3G12410 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 2.5e-85 319.3 242 69.4
AT3G02950 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 2.5e-85 319.3 242 69.0
DCAR_016143 Daucus carota HOM05D005180 ORTHO05D006136 2.5e-85 319.3 207 79.2
Lj6g0006583 Lotus japonicus HOM05D005180 ORTHO05D006136 2.5e-85 319.3 206 82.0
Migut.D00701 Erythranthe guttata HOM05D005180 ORTHO05D006136 3.3e-85 318.9 241 72.6
Nn8g41146 Nelumbo nucifera HOM05D005180 ORTHO05D006136 4.3e-85 318.5 237 72.2
THA.LOC104820896 Tarenaya hassleriana HOM05D005180 ORTHO05D006136 4.3e-85 318.5 203 81.3
CARHR196370 Cardamine hirsuta HOM05D005180 ORTHO05D006136 5.6e-85 318.2 241 70.5
AT5G16790 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 7.3e-85 317.8 237 72.6
CARHR076980 Cardamine hirsuta HOM05D005180 ORTHO05D006136 9.5e-85 317.4 242 69.0
Carub.0003s0208 Capsella rubella HOM05D005180 ORTHO05D006136 1.2e-84 317.0 242 69.4
AUR62000723 Chenopodium quinoa HOM05D005180 ORTHO05D006136 2.1e-84 316.2 241 68.0
Actinidia24488 Actinidia chinensis HOM05D005180 ORTHO05D006136 4.7e-84 315.1 228 75.0
CANSAT56G1354 Cannabis sativa HOM05D005180 ORTHO05D006136 4.7e-84 315.1 244 71.3
Aqoxy3G02241 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 1.1e-83 313.9 241 70.1
Os08g0160000 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 1.1e-83 313.9 242 68.2
Sp3g02010 Schrenkiella parvula HOM05D005180 ORTHO05D006136 1.4e-83 313.5 242 69.0
EL10Ac6g14989 Beta vulgaris HOM05D005180 ORTHO05D006136 5.2e-83 311.6 241 70.5
Aa31LG5G13450 Aethionema arabicum HOM05D005180 ORTHO05D006136 4.4e-82 308.5 206 77.2
PSO782G2417 Papaver somniferum HOM05D005180 ORTHO05D006136 4.4e-82 308.5 241 68.5
HPP92_017562 Vanilla planifolia HOM05D005180 ORTHO05D006136 4.4e-82 308.5 229 72.1
Lj2P827T12 Lonicera japonica HOM05D005180 ORTHO05D006136 9.9e-82 307.4 198 79.8
CDE02G3757 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 8.4e-81 304.3 227 70.0
MBI19_g22663_MAGBIO Magnolia biondii HOM05D005180 ORTHO05D006136 4.1e-80 302.0 241 68.9
Zm00001eb403820 Zea mays HOM05D005180 ORTHO05D006136 1.6e-79 300.1 242 66.5
Cpa.g.sc14.58 Carica papaya HOM05D005180 ORTHO05D006136 2.3e-78 296.2 182 83.0
Dinv16767 Davidia involucrata HOM05D005180 ORTHO05D006136 3.9e-78 295.4 210 76.7
C05p63850 Brassica napus HOM05D005180 ORTHO05D006136 1.1e-77 293.9 242 64.9
BolC5t35050H Brassica oleracea HOM05D005180 ORTHO05D006136 1.1e-77 293.9 242 64.9
Os05g0569800 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 1.9e-77 293.1 243 64.6
A05p44170 Brassica napus HOM05D005180 ORTHO05D006136 1.2e-76 290.4 242 64.5
BraSC90t46693Z Brassica rapa HOM05D005180 ORTHO05D006136 1.2e-76 290.4 242 64.5
Zm00001eb001480 Zea mays HOM05D005180 ORTHO05D006136 4.0e-75 285.4 210 69.5
ATR0829G067 Amborella trichopoda HOM05D005180 ORTHO05D006136 8.9e-75 284.3 242 62.8
Hund05844 Selenicereus undatus HOM05D005180 ORTHO05D006136 2.0e-74 283.1 241 64.3
SMO356G0075 Selaginella moellendorffii HOM05D005180 ORTHO05D006136 5.1e-70 268.5 238 59.2
Mapoly0076s0002 Marchantia polymorpha HOM05D005180 ORTHO05D006136 1.1e-69 267.3 227 61.7
CDE11G0176 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 2.5e-69 266.2 178 75.8
AagrBONN_evm.TU.Sc2ySwM_344.1992 Anthoceros agrestis HOM05D005180 ORTHO05D006136 4.8e-68 261.9 197 69.5
Pp3c15_21620 Physcomitrium patens HOM05D005180 ORTHO05D006136 1.2e-63 247.3 201 62.2
Prupe.8G026900 Prunus persica HOM05D005180 ORTHO05D006136 3.5e-63 245.7 227 62.6
SHI53994 Sapria himalayana HOM05D005180 ORTHO05D006136 1.0e-62 244.2 243 58.4
Carub.0006s1501 Capsella rubella HOM05D005180 ORTHO05D006136 1.5e-61 240.4 151 79.5
MD05G1022700 Malus domestica HOM05D005180 ORTHO05D006136 4.6e-55 218.8 171 70.8
SEGI_37847 Sequoiadendron giganteum HOM05D005180 ORTHO05D006136 1.3e-54 217.2 191 61.8
MD00G1125800 Malus domestica HOM05D005180 ORTHO05D006136 2.5e-48 196.4 132 75.0
MD05G1023000 Malus domestica HOM05D005180 ORTHO05D006136 1.1e-45 187.6 241 50.6
Prupe.8G027200 Prunus persica HOM05D005180 ORTHO05D006136 2.5e-45 186.4 110 80.9
CBR_g51237 Chara braunii HOM05D005180 ORTHO05D006136 4.6e-39 165.6 176 49.4
CBR_g4125 Chara braunii HOM05D005180 ORTHO05D006136 1.0e-38 164.5 173 50.9
Glyma.07G081200 Glycine max HOM05D005180 ORTHO05D006136 2.2e-36 156.8 102 73.5
SHI47254 Sapria himalayana HOM05D005180 ORTHO05D006136 1.5e-34 150.6 130 66.2
MCO09G003 Micromonas commoda HOM05D005180 ORTHO05D006136 1.1e-27 127.9 188 39.4
Prupe.8G026600 Prunus persica HOM05D005180 ORTHO05D006136 1.3e-25 120.9 86 67.4
FvH4_4g00100 Fragaria vesca HOM05D005180 ORTHO05D006136 3.7e-20 102.8 89 67.4
Solyc11g072180.3 Solanum lycopersicum HOM05D005180 ORTHO05D006136 8.2e-20 101.7 90 66.7
Cre03.g182350 Chlamydomonas reinhardtii HOM05D005180 ORTHO05D006136 6.5e-17 92.0 197 29.9
SHI47253 Sapria himalayana HOM05D005180 ORTHO05D006136 2.1e-15 87.0 55 76.4
PRCOL_00001653 Prasinoderma coloniale HOM05D005180 ORTHO05D006136 8.2e-12 75.1 211 27.5
FAN23G1155 Fragaria x ananassa HOM05D001255 ORTHO05D011996 1.1e-11 74.7 77 59.7
FAN23G1307 Fragaria x ananassa HOM05D005180 ORTHO05D006136 7.7e-10 68.6 62 64.5
FAN20G1163 Fragaria x ananassa HOM05D001255 ORTHO05D006136 1.3e-09 67.8 77 53.2
FAN23G2223 Fragaria x ananassa HOM05D001255 ORTHO05D006136 9.4e-08 61.6 55 63.6


User provided reference genes

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