Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.013G068100 Populus trichocarpa HOM05D003829 ORTHO05D004943 0.0e+00 1204.5 597 100.0
Potri.018G070200 Populus trichocarpa HOM05D003829 ORTHO05D004943 0.0e+00 1127.9 597 92.3
Sabra13G0059400 Salix brachista HOM05D003829 ORTHO05D004943 0.0e+00 1098.2 673 84.2
Manes.06G055300 Manihot esculenta HOM05D003829 ORTHO05D004943 9.3e-291 1003.0 598 81.1
Atru.chr10.875 Acer truncatum HOM05D003829 ORTHO05D004943 6.3e-287 990.3 597 81.6
PGR119G2172 Punica granatum HOM05D003829 ORTHO05D004943 1.0e-284 983.0 598 79.3
THA.LOC104820955 Tarenaya hassleriana HOM05D003829 ORTHO05D004943 2.2e-284 981.9 596 80.2
GSVIVG01008188001 Vitis vinifera HOM05D003829 ORTHO05D004943 2.5e-283 978.4 597 78.4
Ciclev10014690m.g Citrus clementina HOM05D003829 ORTHO05D004943 5.5e-283 977.2 597 79.6
Sed0025371 Sechium edule HOM05D003829 ORTHO05D004943 1.6e-282 975.7 597 79.7
THA.LOC104806554 Tarenaya hassleriana HOM05D003829 ORTHO05D004943 3.6e-282 974.5 596 79.9
Eucgr.B02012 Eucalyptus grandis HOM05D003829 ORTHO05D004943 1.4e-281 972.6 596 79.7
TWI73G0611 Tripterygium wilfordii HOM05D003829 ORTHO05D004943 1.5e-280 969.1 597 79.4
Sp6g28120 Schrenkiella parvula HOM05D003829 ORTHO05D004943 3.7e-279 964.5 598 78.6
Carub.0002s1941 Capsella rubella HOM05D003829 ORTHO05D004943 6.3e-279 963.8 597 78.4
AL2G32240 Arabidopsis lyrata HOM05D003829 ORTHO05D004943 8.2e-279 963.4 597 78.4
Gohir.D12G270700 Gossypium hirsutum HOM05D003829 ORTHO05D004943 1.1e-278 963.0 597 80.1
Thecc.03G060100 Theobroma cacao HOM05D003829 ORTHO05D004943 1.1e-278 963.0 597 79.9
Gohir.A12G270300 Gossypium hirsutum HOM05D003829 ORTHO05D004943 6.9e-278 960.3 597 79.6
Gorai.008G291100 Gossypium raimondii HOM05D003829 ORTHO05D004943 1.5e-277 959.1 597 79.7
Prupe.5G041000 Prunus persica HOM05D003829 ORTHO05D004943 5.0e-276 954.1 597 77.9
Prupe.5G212200 Prunus persica HOM05D003829 ORTHO05D004943 1.4e-275 952.6 597 77.9
SGA_v2.0_scaffold116G32207 Striga asiatica HOM05D003829 ORTHO05D004943 1.9e-275 952.2 597 77.9
CsaV3_1G003150 Cucumis sativus L. HOM05D003829 ORTHO05D004943 3.2e-275 951.4 597 76.9
Hund27361 Selenicereus undatus HOM05D003829 ORTHO05D004943 4.2e-275 951.0 619 74.5
Actinidia35063 Actinidia chinensis HOM05D003829 ORTHO05D004943 7.2e-275 950.3 597 77.2
SGA_v2.0_scaffold127G34045 Striga asiatica HOM05D003829 ORTHO05D004943 9.4e-275 949.9 597 77.6
MSTRG.22458 Avicennia marina HOM05D003829 ORTHO05D004943 2.1e-274 948.7 597 77.1
Nn6g34733 Nelumbo nucifera HOM05D003829 ORTHO05D004943 2.7e-274 948.3 593 77.9
ClCG06G015260 Citrullus lanatus HOM05D003829 ORTHO05D004943 3.6e-274 948.0 597 76.7
Actinidia18960 Actinidia chinensis HOM05D003829 ORTHO05D004943 4.7e-274 947.6 597 76.7
Nn3g17616 Nelumbo nucifera HOM05D003829 ORTHO05D004943 3.9e-273 944.5 596 76.3
CSS0022273 Camellia sinensis var. sinensis HOM05D003829 ORTHO05D004943 1.1e-272 943.0 597 77.2
TAR622G1091 Trochodendron aralioides HOM05D003829 ORTHO05D004943 1.5e-272 942.6 612 76.0
Glyma.05G016400 Glycine max HOM05D003829 ORTHO05D004943 2.2e-271 938.7 607 76.3
AT1G72550 Arabidopsis thaliana HOM05D003829 ORTHO05D004943 7.0e-270 933.7 604 75.7
arahy.Tifrunner.gnm1.ann1.WM1R7K Arachis hypogaea HOM05D003829 ORTHO05D004943 7.0e-270 933.7 607 75.5
Cc00_g04570 Coffea canephora HOM05D003829 ORTHO05D004943 7.0e-270 933.7 597 76.2
C09p61050 Brassica napus HOM05D003829 ORTHO05D004943 2.0e-269 932.2 598 75.9
Glyma.17G083700 Glycine max HOM05D003829 ORTHO05D004943 2.0e-269 932.2 607 75.9
Hma1.2p1_0744F.1_g211650 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 2.0e-269 932.2 597 76.0
arahy.Tifrunner.gnm1.ann1.03AHKF Arachis hypogaea HOM05D003829 ORTHO05D004943 2.6e-269 931.8 607 75.3
A10p23060 Brassica napus HOM05D003829 ORTHO05D004943 4.5e-269 931.0 598 75.8
BraA10t44375Z Brassica rapa HOM05D003829 ORTHO05D004943 4.5e-269 931.0 598 75.8
BolC9t58950H Brassica oleracea HOM05D003829 ORTHO05D004943 1.0e-268 929.9 598 75.8
Lalb_Chr12g0197451 Lupinus albus HOM05D003829 ORTHO05D004943 6.5e-268 927.2 607 75.5
VMungo1215G2863 Vigna mungo HOM05D003829 ORTHO05D004943 6.5e-268 927.2 607 75.6
Phvul.003G180700 Phaseolus vulgaris HOM05D003829 ORTHO05D004943 1.5e-267 926.0 607 75.1
MD06G1208000 Malus domestica HOM05D003829 ORTHO05D004943 4.2e-267 924.5 603 75.8
DCAR_011621 Daucus carota HOM05D003829 ORTHO05D004943 3.6e-266 921.4 598 75.9
Psat4g043920 Pisum sativum HOM05D003829 ORTHO05D004943 3.6e-266 921.4 607 75.1
RcHm_v2.0_Chr7g0184111 Rosa chinensis HOM05D003829 ORTHO05D004943 4.7e-266 921.0 614 73.3
Medtr4g112680 Medicago truncatula HOM05D003829 ORTHO05D004943 1.0e-265 919.8 607 75.1
AUR62008644 Chenopodium quinoa HOM05D003829 ORTHO05D004943 2.3e-265 918.7 607 74.1
Lj4g0017423 Lotus japonicus HOM05D003829 ORTHO05D004943 3.0e-265 918.3 607 74.6
ATR0789G018 Amborella trichopoda HOM05D003829 ORTHO05D004943 6.7e-265 917.1 600 74.7
EL10Ac6g14132 Beta vulgaris HOM05D003829 ORTHO05D004943 1.5e-264 916.0 624 71.6
AUR62014243 Chenopodium quinoa HOM05D003829 ORTHO05D004943 1.5e-264 916.0 607 74.1
SalBow6G2606 Salvia bowleyana HOM05D003829 ORTHO05D004943 3.3e-264 914.8 597 74.4
QL10p021913 Quercus lobata HOM05D003829 ORTHO05D004943 1.7e-263 912.5 607 74.8
CAN.G282.43 Capsicum annuum HOM05D003829 ORTHO05D004943 2.8e-263 911.8 597 74.2
Lj4C813G7 Lonicera japonica HOM05D003829 ORTHO05D004943 2.8e-263 911.8 575 76.9
HanXRQChr03g0078721 Helianthus annuus HOM05D003829 ORTHO05D004943 6.3e-263 910.6 597 75.2
ECA240G3266 Erigeron canadensis HOM05D003829 ORTHO05D003544 1.8e-262 909.1 597 74.9
CARHR065490 Cardamine hirsuta HOM05D003829 ORTHO05D004943 1.6e-261 906.0 609 73.4
FvH4_5g13020 Fragaria vesca HOM05D003829 ORTHO05D004943 1.6e-261 906.0 610 73.1
MD14G1218400 Malus domestica HOM05D003829 ORTHO05D004943 3.5e-261 904.8 603 74.3
Sc12g0007010 Simmondsia chinensis HOM05D003829 ORTHO05D004943 5.9e-261 904.0 597 73.9
Sopen01g003830 Solanum pennellii HOM05D003829 ORTHO05D004943 1.0e-260 903.3 597 73.4
FAN08G2534 Fragaria x ananassa HOM05D003829 ORTHO05D004943 1.3e-260 902.9 610 73.0
FAN18G1085 Fragaria x ananassa HOM05D003829 ORTHO05D004943 1.7e-260 902.5 610 73.0
Cpa.g.sc271.5 Carica papaya HOM05D003829 ORTHO05D004943 3.8e-260 901.4 597 76.0
Ah.03g138770 Amaranthus hybridus HOM05D003829 ORTHO05D004943 6.5e-260 900.6 576 75.3
Aa31LG11G13610 Aethionema arabicum HOM05D003829 ORTHO05D004943 8.5e-260 900.2 635 71.2
FAN13G0156 Fragaria x ananassa HOM05D003829 ORTHO05D004943 1.5e-259 899.4 610 73.0
HanXRQChr09g0270121 Helianthus annuus HOM05D003829 ORTHO05D004943 1.5e-259 899.4 598 74.4
CiPaw.04G139300 Carya illinoinensis HOM05D003829 ORTHO05D004943 2.7e-258 895.2 608 73.0
Solyc01g008310.4 Solanum lycopersicum HOM05D003829 ORTHO05D004943 2.8e-255 885.2 574 74.7
COL.COLO4_28877 Corchorus olitorius HOM05D003829 ORTHO05D004943 3.7e-255 884.8 629 72.3
Migut.N03353 Erythranthe guttata HOM05D003829 ORTHO05D004943 6.3e-255 884.0 580 74.5
Thhalv10007156m.g Eutrema salsugineum HOM05D003829 ORTHO05D004943 9.1e-254 880.2 597 72.0
Migut.M00517 Erythranthe guttata HOM05D003829 ORTHO05D004943 1.3e-252 876.3 597 72.7
Migut.O00831 Erythranthe guttata HOM05D003829 ORTHO05D004943 5.5e-251 870.9 597 72.4
unitig_0.g846 Utricularia gibba HOM05D003829 ORTHO05D004943 1.2e-250 869.8 596 70.8
BcaC04g18917 Brassica carinata HOM05D003829 ORTHO05D004943 4.7e-250 867.8 598 71.6
Dinv38617 Davidia involucrata HOM05D003829 ORTHO05D004943 4.7e-250 867.8 576 72.7
CDE10G0816 Ceratophyllum demersum HOM05D003829 ORTHO05D004943 2.3e-249 865.5 589 71.5
unitig_60.g25860 Utricularia gibba HOM05D003829 ORTHO05D004943 1.2e-248 863.2 610 69.2
Peaxi162Scf00153g00217 Petunia axillaris HOM05D003829 ORTHO05D004943 3.7e-247 858.2 597 70.7
CANSAT80G2907 Cannabis sativa HOM05D003829 ORTHO05D004943 5.9e-245 850.9 524 77.7
vmacro21052 Vaccinium macrocarpon HOM05D003829 ORTHO05D004943 1.7e-244 849.4 734 60.9
Cfa021591 Carpinus fangiana HOM05D003829 ORTHO05D004943 1.4e-241 839.7 591 72.4
Nitab4.5_0006274g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 1.4e-241 839.7 597 70.0
Duzib084G0834 Durio zibethinus HOM05D003829 ORTHO05D004943 6.8e-241 837.4 597 72.0
Ca_21737_v3 Cicer arietinum L. HOM05D003829 ORTHO05D004943 2.6e-240 835.5 572 73.4
MELO3C017266.2 Cucumis melo HOM05D003829 ORTHO05D004943 2.1e-234 815.8 521 76.2
PSO676G0009 Papaver somniferum HOM05D003829 ORTHO05D004943 5.2e-233 811.2 610 66.9
Os05g0558900 Oryza sativa ssp. japonica HOM05D003829 ORTHO05D004943 1.2e-232 810.1 601 68.2
PSO384G2719 Papaver somniferum HOM05D003829 ORTHO05D004943 2.2e-231 805.8 608 66.3
Mapoly0013s0023 Marchantia polymorpha HOM05D003829 ORTHO05D004943 6.0e-229 797.7 600 66.5
Pp3c22_15340 Physcomitrium patens HOM05D003829 ORTHO05D004943 6.2e-226 787.7 605 65.1
SMO351G0192 Selaginella moellendorffii HOM05D003829 ORTHO05D004943 1.8e-225 786.2 600 65.3
Aqoxy6G02137 Aquilegia oxysepala HOM05D003829 ORTHO05D004943 2.9e-223 778.9 601 65.4
BcaB08g36877 Brassica carinata HOM05D003829 ORTHO05D004943 1.1e-222 776.9 583 67.6
TPR.G23867 Trifolium pratense HOM05D003829 ORTHO05D004943 1.2e-221 773.5 533 72.4
Aqoxy1G02793 Aquilegia oxysepala HOM05D003829 ORTHO05D004943 2.7e-221 772.3 601 65.1
Pp3c19_13120 Physcomitrium patens HOM05D003829 ORTHO05D004943 6.0e-221 771.2 606 64.4
COL.COLO4_30269 Corchorus olitorius HOM05D003829 ORTHO05D004943 1.3e-220 770.0 792 55.3
CiPaw.15G121900 Carya illinoinensis HOM05D003829 ORTHO05D004943 2.3e-217 759.2 526 72.6
Zm00001eb267900 Zea mays HOM05D003829 ORTHO05D004943 3.8e-215 751.9 601 64.9
CDE10G0520 Ceratophyllum demersum HOM05D003829 ORTHO05D004943 7.1e-214 747.7 527 70.0
CBR_g49053 Chara braunii HOM05D003829 ORTHO05D004943 2.1e-213 746.1 600 62.7
Medtr5g077610 Medicago truncatula HOM05D003829 ORTHO05D004943 5.2e-209 731.5 607 62.4
Oeu037756.2 Olea europaea HOM05D003829 ORTHO05D004943 7.8e-205 717.6 490 72.4
Lsat_1_v5_gn_1_11920 Lactuca sativa HOM05D003829 ORTHO05D004943 7.1e-198 694.5 460 73.7
AagrBONN_evm.TU.Sc2ySwM_199.43 Anthoceros agrestis HOM05D003829 ORTHO05D004943 3.0e-196 689.1 520 65.8
Migut.L00155 Erythranthe guttata HOM05D003829 ORTHO05D004943 8.7e-196 687.6 443 74.7
Cre13.g603900 Chlamydomonas reinhardtii HOM05D003829 ORTHO05D004943 5.6e-187 658.3 617 55.3
MCO09G827 Micromonas commoda HOM05D003829 ORTHO05D004943 1.3e-183 647.1 610 55.7
PSO339G3234 Papaver somniferum HOM05D003829 ORTHO05D004943 6.5e-183 644.8 579 59.8
CiPaw.16G081500 Carya illinoinensis HOM05D003829 ORTHO05D004943 1.9e-182 643.3 428 75.7
Atru.chr11.247 Acer truncatum HOM05D003829 ORTHO05D004943 6.3e-178 628.2 499 64.9
PRCOL_00001438 Prasinoderma coloniale HOM05D003829 ORTHO05D004943 1.2e-176 624.0 589 53.3
HPP92_013145 Vanilla planifolia HOM05D003829 ORTHO05D004943 2.2e-170 603.2 610 53.9
Rhsim09G0091000 Rhododendron simsii HOM05D003829 ORTHO05D004943 4.2e-158 562.4 413 67.1
Rhsim01G0138800 Rhododendron simsii HOM05D003829 ORTHO05D004943 1.1e-155 554.3 795 43.4
Hma1.2p1_0340F.1_g130210 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 2.2e-151 540.0 400 69.0
Haze_26625 Corylus avellana HOM05D003829 ORTHO05D004943 8.5e-151 538.1 612 46.6
Haze_18554 Corylus avellana HOM05D003829 ORTHO05D004943 3.6e-149 532.7 381 70.9
Cfa026018 Carpinus fangiana HOM05D003829 ORTHO05D004943 8.0e-149 531.6 601 47.4
HPP92_013144 Vanilla planifolia HOM05D003829 ORTHO05D004943 6.6e-127 458.8 336 69.0
Haze_25314 Corylus avellana HOM05D003829 ORTHO05D004943 1.8e-124 450.7 318 72.6
QL10p029183 Quercus lobata HOM05D003829 ORTHO05D004943 7.0e-113 412.1 259 77.6
SEGI_10599 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 5.6e-110 402.5 288 69.8
Nitab4.5_0001328g0030 Nicotiana tabacum HOM05D003829 ORTHO05D004943 6.2e-109 399.1 596 40.9
AagrBONN_evm.TU.Sc2ySwM_368.2791 Anthoceros agrestis HOM05D003829 ORTHO05D004943 1.3e-106 391.3 416 51.7
HPP92_012745 Vanilla planifolia HOM05D003829 ORTHO05D004943 6.4e-106 389.0 319 64.3
HPP92_013183 Vanilla planifolia HOM05D003829 ORTHO05D004943 3.5e-104 383.3 457 48.1
SEGI_36904 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 1.4e-97 361.3 290 64.1
HPP92_013146 Vanilla planifolia HOM05D003829 ORTHO05D004943 1.7e-87 327.8 300 59.0
Nitab4.5_0000069g0100 Nicotiana tabacum HOM05D003829 ORTHO05D004943 4.5e-83 313.2 257 61.1
SEGI_15169 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 9.3e-81 305.4 193 75.1
Nitab4.5_0023629g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 2.1e-77 294.3 223 67.7
HPP92_013143 Vanilla planifolia HOM05D003829 ORTHO05D004943 1.8e-76 291.2 262 57.3
Nitab4.5_0021995g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 5.5e-73 279.6 186 75.3
C02p08100 Brassica napus HOM05D003829 ORTHO05D004943 9.3e-73 278.9 203 65.5
Nitab4.5_0023875g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 4.6e-72 276.6 179 74.3
SEGI_31614 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 7.9e-72 275.8 179 73.2
Haze_25313 Corylus avellana HOM05D003829 ORTHO05D004943 3.7e-69 266.9 160 80.6
Haze_18553 Corylus avellana HOM05D003829 ORTHO05D004943 6.2e-69 266.2 157 80.9
BcaC03g18463 Brassica carinata HOM05D003829 ORTHO05D004943 6.5e-66 256.1 204 61.3
BolC2t06732H Brassica oleracea HOM05D003829 ORTHO05D004943 1.6e-64 251.5 204 60.8
Migut.L00154 Erythranthe guttata HOM05D003829 ORTHO05D004943 6.7e-63 246.1 156 75.6
Duzib205G0197 Durio zibethinus HOM05D003829 ORTHO05D004943 5.7e-62 243.0 467 36.6
Sp5g27630 Schrenkiella parvula HOM05D003829 ORTHO05D004943 5.9e-59 233.0 254 52.0
Eucgr.E02529 Eucalyptus grandis HOM05D003829 ORTHO05D004943 1.5e-54 218.4 130 83.8
SEGI_27435 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 2.2e-53 214.5 142 69.0
Eucgr.B00970 Eucalyptus grandis HOM05D003829 ORTHO05D004943 3.8e-50 203.8 120 80.0
BraA03t10079Z Brassica rapa HOM05D000168 ORTHO05D000811 8.5e-50 202.6 120 75.8
A03p07510 Brassica napus HOM05D003829 ORTHO05D004943 1.4e-49 201.8 120 76.7
Oeu029991.1 Olea europaea HOM05D003829 ORTHO05D004943 1.8e-47 194.9 116 78.4
C03p08720 Brassica napus HOM05D003829 ORTHO05D004943 8.8e-47 192.6 120 74.2
BolC3t13370H Brassica oleracea HOM05D000168 ORTHO05D000811 2.0e-46 191.4 120 73.3
SEGI_39885 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 9.1e-44 182.6 120 70.0
Glyma.05G172902 Glycine max HOM05D003829 ORTHO05D004943 1.9e-41 174.9 145 62.8
HPP92_013186 Vanilla planifolia HOM05D003829 ORTHO05D004943 1.8e-39 168.3 184 51.6
Rhsim09G0090700 Rhododendron simsii HOM05D000822 ORTHO05D002021 4.2e-33 147.1 183 49.7
SEGI_23908 Sequoiadendron giganteum HOM05D003829 ORTHO05D004052 1.5e-30 138.7 225 41.8
HanXRQChr05g0129701 Helianthus annuus HOM05D003829 ORTHO05D044979 9.7e-30 136.0 85 72.9
Glyma.10G113400 Glycine max HOM05D003829 ORTHO05D028379 6.3e-29 133.3 149 52.3
Hma1.2p1_0340F.1_g130220 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 2.7e-24 117.9 130 50.0
MELO3C000039.2 Cucumis melo HOM05D003829 ORTHO05D004943 6.1e-24 116.7 75 70.7
TPR.G25992 Trifolium pratense HOM05D003829 ORTHO05D015515 8.0e-24 116.3 74 73.0
CARHR202060 Cardamine hirsuta HOM05D003829 ORTHO05D116213 1.2e-22 112.5 66 80.3
MELO3C029751.2 Cucumis melo HOM05D003829 ORTHO05D044979 5.7e-22 110.2 87 64.4
HPP92_012679 Vanilla planifolia HOM05D000282 ORTHO05D004791 2.9e-18 97.8 137 40.1
Lsat_1_v5_gn_3_100941 Lactuca sativa HOM05D002028 ORTHO05D022527 5.0e-18 97.1 72 62.5
Nitab4.5_0000138g0100 Nicotiana tabacum HOM05D003829 ORTHO05D284283 2.2e-13 81.6 104 41.3
Haze_25315 Corylus avellana HOM05D003829 ORTHO05D004943 3.5e-11 74.3 60 56.7
Lsat_1_v5_gn_4_30320 Lactuca sativa HOM05D003829 ORTHO05D015515 3.3e-09 67.8 38 78.9
BolC1t02481H Brassica oleracea HOM05D003829 ORTHO05D015515 5.6e-09 67.0 49 67.3
BraA03t15147Z Brassica rapa HOM05D040596 ORTHO05D028154 4.7e-08 63.9 54 61.1
A03p61070 Brassica napus HOM05D003829 ORTHO05D028154 1.0e-07 62.8 49 63.3


User provided reference genes

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