Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.012G114100 Populus trichocarpa HOM05D002705 ORTHO05D004955 0.0e+00 2171.4 1115 100.0
Sabra12G0083000 Salix brachista HOM05D002705 ORTHO05D004955 0.0e+00 2040.4 1141 92.9
Cfa013602 Carpinus fangiana HOM05D002705 ORTHO05D004955 0.0e+00 1520.4 1125 72.3
QL09p027408 Quercus lobata HOM05D002705 ORTHO05D004955 0.0e+00 1510.7 1233 67.6
Atru.chr6.1980 Acer truncatum HOM05D002705 ORTHO05D004955 0.0e+00 1466.4 1161 67.9
Atru.chr6.2006 Acer truncatum HOM05D002705 ORTHO05D004955 0.0e+00 1464.5 1161 67.8
TWI39G0103 Tripterygium wilfordii HOM05D002705 ORTHO05D004955 0.0e+00 1456.4 1166 68.2
TAR636G2282 Trochodendron aralioides HOM05D002705 ORTHO05D004955 0.0e+00 1444.9 1157 67.5
Ciclev10033740m.g Citrus clementina HOM05D002705 ORTHO05D004955 0.0e+00 1440.2 1141 67.9
CiPaw.07G183200 Carya illinoinensis HOM05D002705 ORTHO05D004955 0.0e+00 1439.9 1040 72.4
Haze_22224 Corylus avellana HOM05D002705 ORTHO05D004955 0.0e+00 1431.4 1200 66.2
Prupe.2G270600 Prunus persica HOM05D002705 ORTHO05D004955 0.0e+00 1427.9 1138 67.4
Dinv34540 Davidia involucrata HOM05D002705 ORTHO05D004955 0.0e+00 1422.1 1202 64.4
Actinidia13623 Actinidia chinensis HOM05D002705 ORTHO05D004955 0.0e+00 1419.1 1213 63.4
RcHm_v2.0_Chr1g0373301 Rosa chinensis HOM05D002705 ORTHO05D004955 0.0e+00 1416.0 1110 69.2
Gorai.006G273800 Gossypium raimondii HOM05D002705 ORTHO05D004955 0.0e+00 1386.7 1131 65.8
Thecc.03G145700 Theobroma cacao HOM05D002705 ORTHO05D004955 0.0e+00 1385.5 1100 67.6
FvH4_7g26710 Fragaria vesca HOM05D002705 ORTHO05D004955 0.0e+00 1378.2 1118 66.7
Manes.14G040900 Manihot esculenta HOM05D002705 ORTHO05D004955 0.0e+00 1376.3 872 80.8
Gohir.D09G249500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 0.0e+00 1372.8 1131 65.4
FAN03G2179 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1364.4 1126 66.6
FAN06G0843 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1362.8 1125 66.2
Nn1g00769 Nelumbo nucifera HOM05D002705 ORTHO05D004955 0.0e+00 1360.1 1181 62.8
Gohir.A09G248500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 0.0e+00 1350.9 1144 64.2
Glyma.20G198400 Glycine max HOM05D002705 ORTHO05D004955 0.0e+00 1347.8 1134 64.0
GSVIVG01013853001 Vitis vinifera HOM05D002705 ORTHO05D004955 0.0e+00 1339.7 953 72.9
MELO3C005443.2 Cucumis melo HOM05D002705 ORTHO05D004955 0.0e+00 1339.3 1142 65.0
CsaV3_5G005160 Cucumis sativus L. HOM05D002705 ORTHO05D004955 0.0e+00 1333.5 1142 65.4
Medtr1g072800 Medicago truncatula HOM05D002705 ORTHO05D004955 0.0e+00 1330.1 1006 68.5
Lalb_Chr06g0169611 Lupinus albus HOM05D002705 ORTHO05D004955 0.0e+00 1324.7 1151 62.7
Lj5g0005183 Lotus japonicus HOM05D002705 ORTHO05D004955 0.0e+00 1323.9 1146 62.7
Sed0003657 Sechium edule HOM05D002705 ORTHO05D004955 0.0e+00 1323.9 1141 64.1
PGR142G4199 Punica granatum HOM05D002705 ORTHO05D004955 0.0e+00 1323.5 1173 62.1
ClCG01G004930 Citrullus lanatus HOM05D002705 ORTHO05D004955 0.0e+00 1322.4 1154 63.7
Aa31LG7G10510 Aethionema arabicum HOM05D002705 ORTHO05D004955 0.0e+00 1320.8 1147 63.2
Rhsim03G0158700 Rhododendron simsii HOM05D002705 ORTHO05D004955 0.0e+00 1320.4 1220 60.3
DCAR_014643 Daucus carota HOM05D002705 ORTHO05D004955 0.0e+00 1314.7 1046 66.9
TPR.G18561 Trifolium pratense HOM05D002705 ORTHO05D004955 0.0e+00 1307.7 1023 66.8
Psat6g140240 Pisum sativum HOM05D002705 ORTHO05D004955 0.0e+00 1305.8 1042 66.2
Aqoxy7G00864 Aquilegia oxysepala HOM05D002705 ORTHO05D004955 0.0e+00 1305.0 1226 59.1
AL7G28030 Arabidopsis lyrata HOM05D002705 ORTHO05D004955 0.0e+00 1303.1 1146 62.2
AT4G25120 Arabidopsis thaliana HOM05D002705 ORTHO05D004955 0.0e+00 1300.4 1146 61.7
SGA_v2.0_scaffold352G49687 Striga asiatica HOM05D002705 ORTHO05D004955 0.0e+00 1300.0 1163 62.1
Sopen03g024730 Solanum pennellii HOM05D002705 ORTHO05D004955 0.0e+00 1298.5 1230 59.5
Cc00_g24340 Coffea canephora HOM05D002705 ORTHO05D004955 0.0e+00 1297.7 1220 58.6
Thhalv10024258m.g Eutrema salsugineum HOM05D002705 ORTHO05D004955 0.0e+00 1295.4 1147 62.0
Carub.0007s1591 Capsella rubella HOM05D002705 ORTHO05D004955 0.0e+00 1295.0 1151 62.2
COL.COLO4_37311 Corchorus olitorius HOM05D002705 ORTHO05D004955 0.0e+00 1293.9 1046 67.1
Migut.F01210 Erythranthe guttata HOM05D002705 ORTHO05D004955 0.0e+00 1285.4 1168 61.2
FAN10G0038 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1283.1 1198 60.9
Lj8C49G2 Lonicera japonica HOM05D002705 ORTHO05D004955 0.0e+00 1281.9 1103 63.6
BcaC06g32837 Brassica carinata HOM05D002705 ORTHO05D004955 0.0e+00 1280.0 1188 59.5
THA.LOC104825051 Tarenaya hassleriana HOM05D002705 ORTHO05D004955 0.0e+00 1276.2 1152 61.5
Eucgr.K00116 Eucalyptus grandis HOM05D002705 ORTHO05D004955 0.0e+00 1275.8 913 71.3
MD07G1244800 Malus domestica HOM05D002705 ORTHO05D004955 0.0e+00 1271.1 1126 63.9
HanXRQChr15g0493601 Helianthus annuus HOM05D002705 ORTHO05D004955 0.0e+00 1270.0 1209 59.0
vmacro06848 Vaccinium macrocarpon HOM05D002705 ORTHO05D004955 0.0e+00 1265.8 1083 63.6
PSO675G1384 Papaver somniferum HOM05D002705 ORTHO05D004955 0.0e+00 1259.2 910 72.0
FAN01G0508 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1258.0 1122 62.9
Phvul.L001885 Phaseolus vulgaris HOM05D002705 ORTHO05D004955 0.0e+00 1255.4 1076 63.2
Sp7g23120 Schrenkiella parvula HOM05D002705 ORTHO05D004955 0.0e+00 1251.9 919 69.5
ECA232G4016 Erigeron canadensis HOM05D002705 ORTHO05D004955 0.0e+00 1231.5 1221 58.2
SalBow2G1886 Salvia bowleyana HOM05D002705 ORTHO05D004955 0.0e+00 1223.4 1276 56.3
Nitab4.5_0010058g0010 Nicotiana tabacum HOM05D002705 ORTHO05D004955 0.0e+00 1209.1 1222 57.1
MD07G1243100 Malus domestica HOM05D002705 ORTHO05D004955 0.0e+00 1208.0 873 72.6
A03p55770 Brassica napus HOM05D002705 ORTHO05D004955 0.0e+00 1206.8 1187 57.2
C07p54050 Brassica napus HOM05D002705 ORTHO05D004955 0.0e+00 1205.7 1179 57.4
BraA03t14645Z Brassica rapa HOM05D002705 ORTHO05D004955 0.0e+00 1205.3 1188 56.6
BolC7t45891H Brassica oleracea HOM05D002705 ORTHO05D004955 0.0e+00 1200.3 1183 57.1
EL10As1g23078 Beta vulgaris HOM05D002705 ORTHO05D004955 0.0e+00 1193.3 1206 56.1
Lsat_1_v5_gn_0_9880 Lactuca sativa HOM05D002705 ORTHO05D004955 0.0e+00 1191.0 1206 57.4
ATR0665G329 Amborella trichopoda HOM05D002705 ORTHO05D004955 0.0e+00 1171.8 1212 55.6
Os07g0492100 Oryza sativa ssp. japonica HOM05D002705 ORTHO05D004955 0.0e+00 1168.7 918 64.9
Hma1.2p1_2119F.1_g314370 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 0.0e+00 1148.3 830 71.0
Ah.02g115400 Amaranthus hybridus HOM05D002705 ORTHO05D004955 0.0e+00 1117.8 1034 59.3
Cpa.g.sc13.232 Carica papaya HOM05D002705 ORTHO05D004955 0.0e+00 1110.5 938 66.2
MD07G1245700 Malus domestica HOM05D002705 ORTHO05D004955 0.0e+00 1106.3 834 70.9
MD07G1243600 Malus domestica HOM05D002705 ORTHO05D004955 0.0e+00 1096.6 1127 57.9
MSTRG.8400 Avicennia marina HOM05D002705 ORTHO05D004955 0.0e+00 1085.5 808 70.2
Nitab4.5_0000103g0340 Nicotiana tabacum HOM05D002705 ORTHO05D004955 0.0e+00 1076.6 853 67.1
Solyc03g093850.2 Solanum lycopersicum HOM05D002705 ORTHO05D004955 7.6e-312 1074.7 1021 59.6
Oeu044165.1 Olea europaea HOM05D002705 ORTHO05D004955 4.9e-309 1064.7 981 61.7
CANSAT56G1220 Cannabis sativa HOM05D002705 ORTHO05D004955 1.8e-303 1046.2 857 66.6
HPP92_003517 Vanilla planifolia HOM05D002705 ORTHO05D004955 9.6e-297 1023.8 997 56.5
unitig_578.g16613 Utricularia gibba HOM05D002705 ORTHO05D004955 4.0e-287 991.9 1119 51.6
MD07G1244300 Malus domestica HOM05D002705 ORTHO05D004955 3.8e-277 958.7 785 67.8
Pp3c1_29170 Physcomitrium patens HOM05D002705 ORTHO05D004955 1.2e-270 937.2 990 51.8
Mapoly0067s0049 Marchantia polymorpha HOM05D002705 ORTHO05D004955 1.4e-268 930.2 1052 49.5
arahy.Tifrunner.gnm1.ann1.WYM0Y2 Arachis hypogaea HOM05D002705 ORTHO05D004955 3.2e-268 929.1 690 68.8
AagrBONN_evm.TU.Sc2ySwM_117.709 Anthoceros agrestis HOM05D002705 ORTHO05D004955 7.1e-268 927.9 1014 50.7
arahy.Tifrunner.gnm1.ann1.ZG0SUW Arachis hypogaea HOM05D002705 ORTHO05D004955 1.6e-267 926.8 688 68.8
AUR62042388 Chenopodium quinoa HOM05D002705 ORTHO05D004955 9.7e-257 891.0 1103 48.8
MD07G1241600 Malus domestica HOM05D002705 ORTHO05D004955 4.2e-252 875.5 628 73.2
SMO263G0015 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 3.7e-248 862.4 949 50.6
Peaxi162Scf00073g01729 Petunia axillaris HOM05D002705 ORTHO05D004955 3.8e-245 852.4 595 74.3
CARHR232510 Cardamine hirsuta HOM05D002705 ORTHO05D004955 5.7e-241 838.6 622 68.6
SMO118G0423 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 6.3e-240 835.1 991 48.5
Hma1.2p1_2119F.1_g314360 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 1.1e-223 781.2 1061 46.8
Ca_09785_v3 Cicer arietinum L. HOM05D002705 ORTHO05D004955 1.5e-220 770.8 710 61.7
CSS0042603 Camellia sinensis var. sinensis HOM05D002705 ORTHO05D004955 2.6e-201 706.8 570 67.2
Nn1g00770 Nelumbo nucifera HOM05D002705 ORTHO05D004955 4.4e-193 679.5 496 70.8
Sc11g0004220 Simmondsia chinensis HOM05D002705 ORTHO05D004955 5.2e-186 656.0 484 67.8
CAN.G408.1 Capsicum annuum HOM05D002705 ORTHO05D004955 3.5e-166 590.1 416 72.8
Manes.14G040200 Manihot esculenta HOM05D002705 ORTHO05D004955 2.8e-163 580.5 398 76.1
HPP92_027816 Vanilla planifolia HOM05D002705 ORTHO05D004955 2.7e-158 563.9 742 45.8
AagrBONN_evm.TU.Sc2ySwM_340.578 Anthoceros agrestis HOM05D002705 ORTHO05D004955 7.9e-158 562.4 757 44.1
CAN.G1654.1 Capsicum annuum HOM05D002705 ORTHO05D004955 6.9e-138 496.1 390 66.7
CAN.G1406.2 Capsicum annuum HOM05D002705 ORTHO05D004955 4.1e-130 470.3 348 69.5
MD07G1241700 Malus domestica HOM05D002705 ORTHO05D004955 3.7e-123 447.2 378 65.9
FAN05G3181 Fragaria x ananassa HOM05D002705 ORTHO05D004955 1.7e-112 411.8 346 65.9
CBR_g55304 Chara braunii HOM05D002705 ORTHO05D004955 3.7e-91 340.9 375 46.1
FAN01G1045 Fragaria x ananassa HOM05D002705 ORTHO05D004955 1.0e-72 279.6 270 60.7
SMO118G0116 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 4.4e-68 264.2 461 39.5
Hma1.2p1_2119F.1_g314380 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 2.2e-67 261.9 227 60.4
Cpa.g.sc13.234 Carica papaya HOM05D002705 ORTHO05D004955 2.4e-66 258.5 210 67.1
Ca_09786_v3 Cicer arietinum L. HOM05D002705 ORTHO05D004955 9.2e-66 256.5 207 63.8
CAN.G1559.4 Capsicum annuum HOM05D002705 ORTHO05D004955 2.3e-64 251.9 354 45.2
FAN17G2187 Fragaria x ananassa HOM05D002705 ORTHO05D004955 2.1e-62 245.4 247 59.5
Pp3s32_280 Physcomitrium patens HOM05D020685 ORTHO05D022318 4.7e-62 244.2 702 29.9
Solyc03g093840.3 Solanum lycopersicum HOM05D002705 ORTHO05D004955 1.4e-58 232.6 170 67.6
MD07G1245200 Malus domestica HOM05D002705 ORTHO05D004955 2.1e-57 228.8 165 71.5
CAN.G1654.2 Capsicum annuum HOM05D002705 ORTHO05D004955 7.8e-57 226.9 166 67.5
CAN.G1406.1 Capsicum annuum HOM05D002705 ORTHO05D004955 1.3e-56 226.1 228 53.9
MCO05G634 Micromonas commoda HOM05D002705 ORTHO05D004955 4.8e-54 217.6 705 30.1
SEGI_07874 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 2.6e-52 211.8 255 47.5
Peaxi162Scf00073g01730 Petunia axillaris HOM05D002705 ORTHO05D004955 1.1e-50 206.5 439 39.4
Cfa026800 Carpinus fangiana HOM05D002705 ORTHO05D004955 3.9e-48 198.0 752 27.4
Peaxi162Scf00073g01719 Petunia axillaris HOM05D002705 ORTHO05D004955 1.9e-47 195.7 200 56.0
AagrBONN_evm.TU.Sc2ySwM_362.2714 Anthoceros agrestis HOM05D002705 ORTHO05D004955 4.3e-47 194.5 855 25.5
AagrBONN_evm.TU.Sc2ySwM_368.2221 Anthoceros agrestis HOM05D002705 ORTHO05D004955 1.1e-45 189.9 763 26.9
SEGI_05624 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 2.4e-45 188.7 175 58.3
Mapoly0020s0153 Marchantia polymorpha HOM05D002705 ORTHO05D004955 9.0e-45 186.8 729 26.5
CDE06G1177 Ceratophyllum demersum HOM05D002705 ORTHO05D004955 1.5e-44 186.0 156 60.3
SHI35079 Sapria himalayana HOM05D002705 ORTHO05D000001 4.5e-44 184.5 182 57.7
Pp3s70_120 Physcomitrium patens HOM05D002705 ORTHO05D004955 6.4e-43 180.6 659 28.1
Sc11g0004230 Simmondsia chinensis HOM05D002705 ORTHO05D004955 2.7e-41 175.3 139 62.6
SEGI_26843 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 1.8e-40 172.6 145 61.4
CBR_g46888 Chara braunii HOM05D002705 ORTHO05D004955 1.6e-38 166.0 133 62.4
SMO118G0216 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 1.6e-38 166.0 266 41.4
SEGI_07071 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 6.5e-35 154.1 489 30.9
SMO222G0004 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 1.4e-34 152.9 157 52.9
PRCOL_00004767 Prasinoderma coloniale HOM05D002705 ORTHO05D004955 2.1e-33 149.1 787 25.7
SEGI_13522 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 6.7e-32 144.1 837 25.3
SMO119G0107 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 4.3e-31 141.4 749 24.6
ATR0789G167 Amborella trichopoda HOM05D002705 ORTHO05D004955 6.5e-27 127.5 490 25.1
MD07G1244100 Malus domestica HOM05D002705 ORTHO05D004955 4.2e-26 124.8 101 64.4
VMungo0720G0654 Vigna mungo HOM05D002705 ORTHO05D004955 4.6e-25 121.3 114 59.6
MD07G1244200 Malus domestica HOM05D002705 ORTHO05D004955 6.7e-24 117.5 127 51.2
Hund10671 Selenicereus undatus HOM05D002705 ORTHO05D004955 5.7e-23 114.4 82 69.5
CDE06G2589 Ceratophyllum demersum HOM05D002705 ORTHO05D004955 3.7e-22 111.7 264 36.0
CBR_g22322 Chara braunii HOM05D000019 ORTHO05D000002 2.4e-21 109.0 368 26.9
CBR_g55305 Chara braunii HOM05D002705 ORTHO05D004955 4.1e-21 108.2 105 48.6
Lsat_1_v5_gn_5_183700 Lactuca sativa HOM05D002705 ORTHO05D021366 1.3e-19 103.2 69 78.3
Cre07.g343333 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 4.2e-18 98.2 260 29.2
Medtr0675s0010 Medicago truncatula HOM05D002705 ORTHO05D004955 5.5e-18 97.8 690 25.7
Cre07.g314400 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 4.8e-14 84.7 434 25.1
SMO119G0278 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 1.5e-12 79.7 218 29.8
MD07G1245800 Malus domestica HOM05D002705 ORTHO05D004955 1.7e-11 76.3 221 34.8
Cre07.g312250 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 5.0e-11 74.7 102 44.1
FvH4_3g31690 Fragaria vesca HOM05D000769 ORTHO05D000598 3.9e-08 65.1 42 71.4
CBR_g26524 Chara braunii HOM05D002705 ORTHO05D004955 2.8e-06 58.9 95 38.9
FAN03G1556 Fragaria x ananassa HOM05D002001 ORTHO05D004100 3.7e-06 58.5 73 50.7
Pp3s70_20 Physcomitrium patens HOM05D002705 ORTHO05D313936 6.3e-06 57.8 347 23.3
SMO115G0155 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 6.3e-06 57.8 76 36.8


User provided reference genes

Program Settings