Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.012G049200 Populus trichocarpa HOM05D003955 ORTHO05D004684 0.0e+00 1134.4 610 100.0
Sabra12G0034600 Salix brachista HOM05D003955 ORTHO05D004684 0.0e+00 1103.6 623 92.6
Potri.015G041200 Populus trichocarpa HOM05D003955 ORTHO05D004684 4.2e-312 1074.3 610 93.4
Sabra15G0055900 Salix brachista HOM05D003955 ORTHO05D004684 1.5e-304 1048.9 661 85.8
Sabra15G0063600 Salix brachista HOM05D003955 ORTHO05D004684 4.9e-303 1043.9 616 90.7
Manes.06G008300 Manihot esculenta HOM05D003955 ORTHO05D004684 4.7e-298 1027.3 610 87.5
Gorai.007G004500 Gossypium raimondii HOM05D003955 ORTHO05D004684 1.6e-290 1002.3 610 81.8
Gohir.D11G003500 Gossypium hirsutum HOM05D003955 ORTHO05D004684 2.1e-290 1001.9 610 81.8
Thecc.03G050300 Theobroma cacao HOM05D003955 ORTHO05D004684 3.6e-290 1001.1 610 82.0
Gohir.A11G004000 Gossypium hirsutum HOM05D003955 ORTHO05D004684 4.4e-288 994.2 610 82.0
Cpa.g.sc3.440 Carica papaya HOM05D003955 ORTHO05D004684 2.4e-286 988.4 610 83.9
Cfa019689 Carpinus fangiana HOM05D003955 ORTHO05D004684 2.4e-286 988.4 609 84.4
TWI15G0606 Tripterygium wilfordii HOM05D003955 ORTHO05D004684 7.1e-286 986.9 607 79.1
QL10p027883 Quercus lobata HOM05D003955 ORTHO05D004684 9.6e-283 976.5 609 84.1
GSVIVG01008399001 Vitis vinifera HOM05D003955 ORTHO05D004684 1.1e-281 973.0 610 82.0
Ciclev10007782m.g Citrus clementina HOM05D003955 ORTHO05D004684 6.9e-281 970.3 610 81.8
CiPaw.15G139700 Carya illinoinensis HOM05D003955 ORTHO05D004684 1.5e-280 969.1 609 82.9
MELO3C017347.2 Cucumis melo HOM05D003955 ORTHO05D004684 9.9e-280 966.5 608 79.4
CANSAT80G2537 Cannabis sativa HOM05D003955 ORTHO05D004684 1.7e-279 965.7 610 79.5
CsaV3_1G004220 Cucumis sativus L. HOM05D003955 ORTHO05D004684 2.2e-279 965.3 608 78.9
Haze_18797 Corylus avellana HOM05D003955 ORTHO05D004684 3.8e-279 964.5 614 82.6
RcHm_v2.0_Chr7g0178701 Rosa chinensis HOM05D003955 ORTHO05D004684 6.4e-279 963.8 610 82.3
COL.COLO4_22318 Corchorus olitorius HOM05D003955 ORTHO05D004684 1.4e-278 962.6 637 76.8
Sed0014282 Sechium edule HOM05D003955 ORTHO05D004684 4.2e-278 961.1 608 78.3
ClCG06G014440 Citrullus lanatus HOM05D003955 ORTHO05D004684 1.2e-277 959.5 600 79.2
Prupe.5G230600 Prunus persica HOM05D003955 ORTHO05D004684 1.2e-277 959.5 610 82.0
vmacro16423 Vaccinium macrocarpon HOM05D003955 ORTHO05D004684 1.6e-277 959.1 611 79.9
Sed0001638 Sechium edule HOM05D003955 ORTHO05D004684 1.3e-276 956.1 608 78.5
FAN18G0775 Fragaria x ananassa HOM05D003955 ORTHO05D004684 6.6e-276 953.7 610 82.0
FvH4_5g17110 Fragaria vesca HOM05D003955 ORTHO05D004684 1.9e-275 952.2 610 82.1
Peaxi162Scf00683g00157 Petunia axillaris HOM05D003955 ORTHO05D004684 1.9e-275 952.2 609 81.6
TAR374G0009 Trochodendron aralioides HOM05D003955 ORTHO05D004684 1.9e-275 952.2 610 81.0
Rhsim12G0139700 Rhododendron simsii HOM05D003955 ORTHO05D004684 2.5e-275 951.8 611 79.9
Eucgr.K02263 Eucalyptus grandis HOM05D003955 ORTHO05D004684 1.3e-274 949.5 612 80.2
Hma1.2p1_0669F.1_g200270 Hydrangea macrophylla HOM05D003955 ORTHO05D004684 1.3e-274 949.5 622 79.7
TAR622G0688 Trochodendron aralioides HOM05D003955 ORTHO05D004684 1.3e-274 949.5 610 77.7
Lalb_Chr05g0221841 Lupinus albus HOM05D003955 ORTHO05D004684 3.6e-274 948.0 606 79.5
FAN13G1787 Fragaria x ananassa HOM05D003955 ORTHO05D004684 1.8e-273 945.7 621 80.4
TWI81G0555 Tripterygium wilfordii HOM05D003955 ORTHO05D004684 1.8e-273 945.7 595 77.8
THA.LOC104820357 Tarenaya hassleriana HOM05D003955 ORTHO05D004684 1.5e-272 942.6 606 77.7
FAN04G3226 Fragaria x ananassa HOM05D003955 ORTHO05D004684 3.4e-272 941.4 621 80.0
Nitab4.5_0001158g0090 Nicotiana tabacum HOM05D003955 ORTHO05D004684 1.3e-271 939.5 622 76.5
PGR083G2578 Punica granatum HOM05D003955 ORTHO05D004684 2.2e-271 938.7 609 77.7
FAN08G2535 Fragaria x ananassa HOM05D003955 ORTHO05D004684 2.9e-271 938.3 619 80.0
MD06G1229500 Malus domestica HOM05D003955 ORTHO05D004684 2.9e-271 938.3 608 80.3
MD14G1234400 Malus domestica HOM05D003955 ORTHO05D004684 6.4e-271 937.2 608 78.5
Nitab4.5_0001644g0090 Nicotiana tabacum HOM05D003955 ORTHO05D004684 6.4e-271 937.2 633 75.0
Lj4g0027787 Lotus japonicus HOM05D003955 ORTHO05D004684 5.4e-270 934.1 604 77.8
Glyma.08G051900 Glycine max HOM05D003955 ORTHO05D004684 1.6e-269 932.6 606 77.4
Glyma.05G243900 Glycine max HOM05D003955 ORTHO05D004684 2.1e-269 932.2 608 77.1
Thhalv10020321m.g Eutrema salsugineum HOM05D003955 ORTHO05D004684 2.7e-269 931.8 609 78.3
MSTRG.9290 Avicennia marina HOM05D003955 ORTHO05D004684 7.9e-269 930.2 609 73.2
Migut.D01456 Erythranthe guttata HOM05D003955 ORTHO05D004684 7.9e-269 930.2 610 76.2
PGSC0003DMG400005655 Solanum tuberosum HOM05D003955 ORTHO05D004684 1.8e-268 929.1 610 76.4
Aa31LG8G4920 Aethionema arabicum HOM05D003955 ORTHO05D004684 3.0e-268 928.3 608 77.3
VMungo0251G3447 Vigna mungo HOM05D003955 ORTHO05D004684 5.1e-268 927.5 606 77.2
Sp3g16180 Schrenkiella parvula HOM05D003955 ORTHO05D004684 1.1e-267 926.4 609 78.0
Sopen03g037980 Solanum pennellii HOM05D003955 ORTHO05D004684 3.3e-267 924.9 610 75.9
CARHR093380 Cardamine hirsuta HOM05D003955 ORTHO05D004684 1.6e-266 922.5 609 77.5
Aqoxy3G04013 Aquilegia oxysepala HOM05D003955 ORTHO05D004684 2.1e-266 922.2 610 77.9
Dinv26502 Davidia involucrata HOM05D003955 ORTHO05D004684 2.1e-266 922.2 605 80.2
Psat7g000120 Pisum sativum HOM05D003955 ORTHO05D004684 3.7e-266 921.4 606 77.1
SGA_v2.0_scaffold25G10972 Striga asiatica HOM05D003955 ORTHO05D004684 4.8e-266 921.0 610 75.7
Solyc03g119090.3 Solanum lycopersicum HOM05D003955 ORTHO05D004684 8.1e-266 920.2 610 75.4
Phvul.002G327600 Phaseolus vulgaris HOM05D003955 ORTHO05D004684 1.1e-265 919.8 606 78.4
CSS0005322 Camellia sinensis var. sinensis HOM05D003955 ORTHO05D004684 1.4e-265 919.5 610 77.5
Medtr8g106820 Medicago truncatula HOM05D003955 ORTHO05D004684 1.8e-265 919.1 606 77.6
Ca_17215_v3 Cicer arietinum L. HOM05D003955 ORTHO05D004684 9.0e-265 916.8 604 77.6
Ca_17217_v3 Cicer arietinum L. HOM05D003955 ORTHO05D004684 9.0e-265 916.8 604 77.6
Dinv05158 Davidia involucrata HOM05D003955 ORTHO05D004684 1.2e-264 916.4 607 76.3
PSO782G1387 Papaver somniferum HOM05D003955 ORTHO05D004684 2.0e-264 915.6 610 75.1
Carub.0003s1778 Capsella rubella HOM05D003955 ORTHO05D004684 5.8e-264 914.1 609 76.4
DCAR_014770 Daucus carota HOM05D003955 ORTHO05D004684 5.8e-264 914.1 609 74.5
PSO063G1948 Papaver somniferum HOM05D003955 ORTHO05D004684 8.4e-263 910.2 610 75.1
AL3G31220 Arabidopsis lyrata HOM05D003955 ORTHO05D004684 1.1e-262 909.8 609 76.5
AT3G18060 Arabidopsis thaliana HOM05D003955 ORTHO05D004684 1.4e-262 909.4 609 76.4
BolC5t33552H Brassica oleracea HOM05D003955 ORTHO05D004684 3.0e-260 901.7 608 76.2
C05p48110 Brassica napus HOM05D003955 ORTHO05D004684 1.5e-259 899.4 608 76.3
A05p31710 Brassica napus HOM05D003955 ORTHO05D004684 7.4e-259 897.1 608 76.2
BraA05t22004Z Brassica rapa HOM05D003955 ORTHO05D004684 7.4e-259 897.1 608 76.2
Lj2A556T29 Lonicera japonica HOM05D003955 ORTHO05D004684 6.9e-257 890.6 609 77.0
HanXRQChr10g0314661 Helianthus annuus HOM05D003955 ORTHO05D004684 3.4e-256 888.3 610 71.6
Atru.chr11.420 Acer truncatum HOM05D003955 ORTHO05D004684 1.0e-255 886.7 610 73.9
CDE04G0774 Ceratophyllum demersum HOM05D003955 ORTHO05D004684 1.7e-255 885.9 611 75.6
Ciclev10014635m.g Citrus clementina HOM05D003955 ORTHO05D004684 9.3e-254 880.2 604 73.7
Lsat_1_v5_gn_5_91461 Lactuca sativa HOM05D003955 ORTHO05D004684 7.9e-253 877.1 611 71.7
Manes.15G126700 Manihot esculenta HOM05D003955 ORTHO05D004684 3.9e-252 874.8 610 72.5
ATR0686G116 Amborella trichopoda HOM05D003955 ORTHO05D004684 1.9e-251 872.5 612 71.9
AUR62041238 Chenopodium quinoa HOM05D003955 ORTHO05D004684 3.3e-251 871.7 607 71.8
Sc11g0004100 Simmondsia chinensis HOM05D003955 ORTHO05D004684 3.3e-251 871.7 610 73.6
Cpa.g.sc211.2 Carica papaya HOM05D003955 ORTHO05D004684 8.2e-250 867.1 611 72.8
COL.COLO4_20464 Corchorus olitorius HOM05D003955 ORTHO05D004684 8.2e-250 867.1 610 68.4
Gorai.002G180400 Gossypium raimondii HOM05D003955 ORTHO05D004684 8.2e-250 867.1 610 67.7
AUR62014196 Chenopodium quinoa HOM05D003955 ORTHO05D004684 3.1e-249 865.1 607 68.9
DCAR_023230 Daucus carota HOM05D003955 ORTHO05D004684 3.1e-249 865.1 604 70.7
Lj5g0018825 Lotus japonicus HOM05D003955 ORTHO05D004684 4.5e-248 861.3 608 71.7
ECA234G1883 Erigeron canadensis HOM05D003955 ORTHO05D004684 1.4e-246 856.3 593 72.2
Medtr1g107560 Medicago truncatula HOM05D003955 ORTHO05D004684 1.4e-246 856.3 604 68.7
arahy.Tifrunner.gnm1.ann1.I5E1T8 Arachis hypogaea HOM05D003955 ORTHO05D004684 3.2e-246 855.1 610 69.7
Lj6A27G8 Lonicera japonica HOM05D003955 ORTHO05D004684 1.4e-244 849.7 691 68.2
Oeu061232.2 Olea europaea HOM05D003955 ORTHO05D004684 5.1e-244 847.8 688 63.1
Glyma.20G126400 Glycine max HOM05D003955 ORTHO05D004684 1.1e-243 846.7 607 69.9
TPR.G13862 Trifolium pratense HOM05D003955 ORTHO05D004684 7.4e-243 844.0 606 70.0
arahy.Tifrunner.gnm1.ann1.MW1RK6 Arachis hypogaea HOM05D003955 ORTHO05D004684 9.7e-243 843.6 623 68.1
Nn4g24112 Nelumbo nucifera HOM05D003955 ORTHO05D004684 6.3e-242 840.9 563 78.0
Psat6g220280 Pisum sativum HOM05D003955 ORTHO05D004684 2.4e-241 839.0 610 69.7
unitig_899.g15402 Utricularia gibba HOM05D003955 ORTHO05D004684 5.9e-240 834.3 604 68.7
VMungo0720G1874 Vigna mungo HOM05D003955 ORTHO05D004684 2.2e-239 832.4 607 69.9
Phvul.007G038100 Phaseolus vulgaris HOM05D003955 ORTHO05D004684 5.5e-238 827.8 605 69.8
Thhalv10000821m.g Eutrema salsugineum HOM05D003955 ORTHO05D004684 7.2e-238 827.4 613 70.5
Os01g0125800 Oryza sativa ssp. japonica HOM05D003955 ORTHO05D004684 3.6e-237 825.1 611 66.0
Sp2g12780 Schrenkiella parvula HOM05D003955 ORTHO05D004684 1.4e-236 823.2 613 69.2
Zm00001eb334960 Zea mays HOM05D003955 ORTHO05D004684 1.8e-236 822.8 607 66.1
Zm00001eb125700 Zea mays HOM05D003955 ORTHO05D004684 3.0e-236 822.0 611 66.0
AL5G10290 Arabidopsis lyrata HOM05D003955 ORTHO05D004684 8.8e-236 820.5 613 68.4
Actinidia18907 Actinidia chinensis HOM05D003955 ORTHO05D004684 1.1e-235 820.1 611 68.7
BcaC04g21593 Brassica carinata HOM05D003955 ORTHO05D004684 5.7e-235 817.8 613 67.9
CARHR143850 Cardamine hirsuta HOM05D003955 ORTHO05D004684 7.4e-235 817.4 613 67.5
Hund24990 Selenicereus undatus HOM05D003955 ORTHO05D004684 7.4e-235 817.4 682 60.6
C09p30050 Brassica napus HOM05D003955 ORTHO05D004684 4.8e-234 814.7 618 67.2
BolC9t55869H Brassica oleracea HOM05D003955 ORTHO05D004684 4.8e-234 814.7 618 67.2
EL10Ac6g14239 Beta vulgaris HOM05D003955 ORTHO05D004684 1.1e-233 813.5 592 69.3
THA.LOC104823875 Tarenaya hassleriana HOM05D003955 ORTHO05D004684 1.1e-233 813.5 611 67.6
Carub.0005s0030 Capsella rubella HOM05D003955 ORTHO05D004684 1.4e-233 813.1 613 66.7
BcaB07g30749 Brassica carinata HOM05D003955 ORTHO05D004684 3.1e-233 812.0 613 68.0
Aa31LG2G8590 Aethionema arabicum HOM05D003955 ORTHO05D004684 5.3e-233 811.2 645 63.9
A09p23310 Brassica napus HOM05D003955 ORTHO05D004684 9.1e-233 810.4 618 66.8
BraA09t37932Z Brassica rapa HOM05D003955 ORTHO05D004684 2.0e-232 809.3 618 66.7
AT2G01330 Arabidopsis thaliana HOM05D003955 ORTHO05D004684 2.9e-231 805.4 613 67.2
Ah.03g138590 Amaranthus hybridus HOM05D003955 ORTHO05D004684 1.2e-229 800.0 608 67.4
Gohir.A01G153300 Gossypium hirsutum HOM05D003955 ORTHO05D004684 2.1e-221 772.7 524 73.1
Gohir.D01G099700 Gossypium hirsutum HOM05D003955 ORTHO05D004684 3.6e-221 771.9 524 73.1
TPR.G12969 Trifolium pratense HOM05D003955 ORTHO05D004684 3.3e-198 695.7 472 79.0
Pp3c3_9960 Physcomitrium patens HOM05D003955 ORTHO05D004684 1.8e-196 689.9 608 57.6
Hund20686 Selenicereus undatus HOM05D003955 ORTHO05D004684 4.9e-186 655.2 478 68.8
Mapoly0025s0096 Marchantia polymorpha HOM05D003955 ORTHO05D004684 1.4e-185 653.7 610 52.1
Actinidia35113 Actinidia chinensis HOM05D003955 ORTHO05D004684 3.2e-185 652.5 401 82.8
Cc04_g06570 Coffea canephora HOM05D003955 ORTHO05D004684 2.0e-171 606.7 386 80.3
SMO298G0047 Selaginella moellendorffii HOM05D003955 ORTHO05D004684 3.4e-163 579.3 610 49.0
AagrBONN_evm.TU.Sc2ySwM_340.157 Anthoceros agrestis HOM05D003955 ORTHO05D004684 9.9e-163 577.8 611 54.0
Thecc.02G279800 Theobroma cacao HOM05D003955 ORTHO05D004684 1.6e-160 570.5 426 69.2
Lalb_Chr06g0165551 Lupinus albus HOM05D003955 ORTHO05D004684 3.0e-151 539.7 421 68.4
HPP92_000152 Vanilla planifolia HOM05D003955 ORTHO05D004684 1.7e-146 523.9 480 58.5
Atru.chr9.1765 Acer truncatum HOM05D003955 ORTHO05D004684 3.1e-124 449.9 283 78.4
BolC5t33521H Brassica oleracea HOM05D003955 ORTHO05D004684 4.1e-124 449.5 333 67.9
SEGI_26510 Sequoiadendron giganteum HOM05D003955 ORTHO05D004684 4.8e-117 426.0 352 61.4
Oeu031790.1 Olea europaea HOM05D003955 ORTHO05D004684 8.2e-117 425.2 355 60.6
CBR_g51409 Chara braunii HOM05D003955 ORTHO05D004684 2.4e-116 423.7 486 53.3
MCO02G121 Micromonas commoda HOM05D003955 ORTHO05D004684 3.7e-93 346.7 643 36.2
PRCOL_00004882 Prasinoderma coloniale HOM05D003955 ORTHO05D004684 4.1e-92 343.2 619 41.0
Cc04_g06580 Coffea canephora HOM05D003955 ORTHO05D004684 4.7e-88 329.7 222 76.1
Lalb_Chr06g0165541 Lupinus albus HOM05D003955 ORTHO05D004684 3.0e-87 327.0 185 81.6
Haze_27019 Corylus avellana HOM05D003955 ORTHO05D004684 3.3e-73 280.4 494 36.8
Zm00001eb337090 Zea mays HOM05D003955 ORTHO05D004684 2.2e-61 241.1 166 77.1
Zm00001eb396840 Zea mays HOM05D003955 ORTHO05D004684 2.9e-61 240.7 166 77.1
Zm00001eb287030 Zea mays HOM05D003955 ORTHO05D004684 2.7e-59 234.2 164 76.8
Zm00001eb076360 Zea mays HOM05D003955 ORTHO05D004684 1.7e-58 231.5 164 76.2
BcaC05g28709 Brassica carinata HOM05D003955 ORTHO05D004684 4.3e-57 226.9 128 83.6
Atru.chr9.1764 Acer truncatum HOM05D003955 ORTHO05D004684 2.8e-56 224.2 171 74.9
TPR.G12747 Trifolium pratense HOM05D003955 ORTHO05D004684 4.0e-55 220.3 130 78.5
Ca_27465_v3 Cicer arietinum L. HOM05D003955 ORTHO05D004684 1.2e-54 218.8 131 79.4
Hund20688 Selenicereus undatus HOM05D003955 ORTHO05D004684 2.0e-54 218.0 131 79.4
Oeu031786.1 Olea europaea HOM05D003955 ORTHO05D004684 7.1e-44 183.0 131 70.2
BcaB03g13114 Brassica carinata HOM05D003955 ORTHO05D030800 1.5e-38 165.2 158 55.1
RcHm_v2.0_Chr5g0062751 Rosa chinensis HOM05D003955 ORTHO05D004684 5.6e-33 146.7 94 73.4
Oeu013618.1 Olea europaea HOM05D003955 ORTHO05D004684 9.3e-28 129.4 132 53.8
Zm00001eb221950 Zea mays HOM05D003955 ORTHO05D004684 7.9e-27 126.3 95 62.1
Atru.chr5.1031 Acer truncatum HOM05D003955 ORTHO05D030800 2.0e-22 111.7 81 66.7
BcaB07g32970 Brassica carinata HOM05D003955 ORTHO05D004684 1.7e-21 108.6 167 41.9
Actinidia37891 Actinidia chinensis HOM05D003955 ORTHO05D030800 3.3e-17 94.4 221 30.8
Zm00001eb369430 Zea mays HOM05D003955 ORTHO05D004684 4.3e-17 94.0 54 75.9
Actinidia37893 Actinidia chinensis HOM05D003955 ORTHO05D004684 1.7e-13 82.0 53 71.7
RcHm_v2.0_Chr6g0266701 Rosa chinensis HOM05D003955 ORTHO05D004684 9.4e-12 76.3 72 51.4
RcHm_v2.0_Chr6g0295791 Rosa chinensis HOM05D003955 ORTHO05D004684 4.6e-11 73.9 72 50.0
Zm00001eb265330 Zea mays HOM05D003955 ORTHO05D004684 1.8e-10 72.0 54 63.0
FvH4_5g16561 Fragaria vesca HOM05D020439 ORTHO05D035355 1.5e-09 68.9 49 59.2
COL.COLO4_22316 Corchorus olitorius HOM05D003955 ORTHO05D004684 1.7e-08 65.5 49 65.3
MD03G1215900 Malus domestica HOM05D002303 ORTHO05D007639 2.2e-08 65.1 225 22.7
Aa31LG3G10470 Aethionema arabicum HOM05D002303 ORTHO05D007639 3.7e-08 64.3 222 21.2
Phvul.008G125400 Phaseolus vulgaris HOM05D000836 ORTHO05D000709 1.4e-07 62.4 300 21.3
ECA246G5178 Erigeron canadensis HOM05D002303 ORTHO05D007639 3.1e-07 61.2 222 22.5
Gorai.007G154000 Gossypium raimondii HOM05D000836 ORTHO05D000709 3.1e-07 61.2 343 20.4
Prupe.4G196900 Prunus persica HOM05D002303 ORTHO05D007639 3.1e-07 61.2 198 24.7
Gohir.D11G143800 Gossypium hirsutum HOM05D000836 ORTHO05D000709 5.3e-07 60.5 343 20.1
Prupe.8G203500 Prunus persica HOM05D000836 ORTHO05D000709 5.9e-06 57.0 301 19.6
MSTRG.12188 Avicennia marina HOM05D000645 ORTHO05D000494 7.7e-06 56.6 203 23.6
RcHm_v2.0_Chr6g0284941 Rosa chinensis HOM05D000836 ORTHO05D000709 7.7e-06 56.6 318 19.2


User provided reference genes

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