Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.012G005800 Populus trichocarpa HOM05D005740 ORTHO05D007085 2.3e-168 595.5 307 100.0
Potri.015G002200 Populus trichocarpa HOM05D005740 ORTHO05D007085 1.4e-133 479.9 308 82.5
Sabra15G0001400 Salix brachista HOM05D005740 ORTHO05D007085 2.7e-132 475.7 307 81.1
Manes.05G197600 Manihot esculenta HOM05D005740 ORTHO05D007085 2.7e-116 422.5 307 74.3
Cpa.g.sc3.153 Carica papaya HOM05D005740 ORTHO05D007085 7.6e-111 404.4 272 77.6
Duzib205G0029 Durio zibethinus HOM05D005740 ORTHO05D007085 2.7e-108 396.0 318 69.2
Thecc.03G208700 Theobroma cacao HOM05D005740 ORTHO05D007085 2.7e-108 396.0 326 68.7
COL.COLO4_14370 Corchorus olitorius HOM05D005740 ORTHO05D007085 6.0e-108 394.8 258 76.7
Ciclev10021260m.g Citrus clementina HOM05D005740 ORTHO05D007085 7.8e-108 394.4 315 69.5
Nn3g18795 Nelumbo nucifera HOM05D005740 ORTHO05D007085 1.9e-106 389.8 300 68.0
CiPaw.05G205100 Carya illinoinensis HOM05D005740 ORTHO05D007085 1.6e-105 386.7 311 68.2
Glyma.04G228400 Glycine max HOM05D005740 ORTHO05D007085 2.8e-105 386.0 264 76.1
Gohir.D08G116100 Gossypium hirsutum HOM05D005740 ORTHO05D007085 3.6e-105 385.6 325 65.8
ClCG02G000010 Citrullus lanatus HOM05D005740 ORTHO05D007085 4.7e-105 385.2 264 74.2
VMungo1309G0132 Vigna mungo HOM05D005740 ORTHO05D007085 2.4e-104 382.9 296 70.6
MD07G1298900 Malus domestica HOM05D005740 ORTHO05D007085 3.1e-104 382.5 289 71.3
Eucgr.A01406 Eucalyptus grandis HOM05D005740 ORTHO05D007085 4.0e-104 382.1 319 66.1
Gorai.004G125000 Gossypium raimondii HOM05D005740 ORTHO05D007085 5.2e-104 381.7 316 66.5
PGR042G0341 Punica granatum HOM05D005740 ORTHO05D007085 6.8e-104 381.3 313 68.4
Glyma.06G136500 Glycine max HOM05D005740 ORTHO05D007085 8.9e-104 380.9 266 75.6
Phvul.009G045100 Phaseolus vulgaris HOM05D005740 ORTHO05D007085 8.9e-104 380.9 290 70.7
arahy.Tifrunner.gnm1.ann1.2GB72X Arachis hypogaea HOM05D005740 ORTHO05D007085 1.2e-103 380.6 290 72.1
THA.LOC104798985 Tarenaya hassleriana HOM05D005740 ORTHO05D007085 2.0e-103 379.8 313 64.9
arahy.Tifrunner.gnm1.ann1.88XX4I Arachis hypogaea HOM05D005740 ORTHO05D007085 2.6e-103 379.4 288 71.9
TWI23G0506 Tripterygium wilfordii HOM05D005740 ORTHO05D007085 3.4e-103 379.0 321 65.7
Haze_00297 Corylus avellana HOM05D005740 ORTHO05D007085 4.4e-103 378.6 324 66.0
Cfa016160 Carpinus fangiana HOM05D005740 ORTHO05D007085 2.2e-102 376.3 289 71.3
GSVIVG01038643001 Vitis vinifera HOM05D005740 ORTHO05D007085 2.9e-102 375.9 231 81.0
CsaV3_2G019690 Cucumis sativus L. HOM05D005740 ORTHO05D007085 3.8e-102 375.6 295 66.4
CARHR188930 Cardamine hirsuta HOM05D005740 ORTHO05D007085 8.4e-102 374.4 313 66.5
MSTRG.26978 Avicennia marina HOM05D005740 ORTHO05D007085 5.4e-101 371.7 302 66.9
CSS0030523 Camellia sinensis var. sinensis HOM05D005740 ORTHO05D007085 9.3e-101 370.9 235 78.7
Sed0000166 Sechium edule HOM05D005740 ORTHO05D007085 1.6e-100 370.2 287 69.3
QL09p007195 Quercus lobata HOM05D005740 ORTHO05D007085 2.7e-100 369.4 320 63.8
Thhalv10004495m.g Eutrema salsugineum HOM05D005740 ORTHO05D007085 7.8e-100 367.9 321 63.9
A09p06460 Brassica napus HOM05D005740 ORTHO05D007085 1.0e-99 367.5 312 64.1
CSS0042637 Camellia sinensis var. sinensis HOM05D005740 ORTHO05D007085 1.7e-99 366.7 236 78.0
BraA09t36289Z Brassica rapa HOM05D005740 ORTHO05D007085 3.0e-99 365.9 306 65.4
Carub.0006s2231 Capsella rubella HOM05D005740 ORTHO05D007085 3.0e-99 365.9 316 64.9
Prupe.2G318800 Prunus persica HOM05D005740 ORTHO05D007085 5.1e-99 365.2 313 65.2
Lj1g0025829 Lotus japonicus HOM05D005740 ORTHO05D007085 6.6e-99 364.8 292 68.8
Lalb_Chr08g0239611 Lupinus albus HOM05D005740 ORTHO05D007085 6.6e-99 364.8 235 82.1
AL6G36080 Arabidopsis lyrata HOM05D005740 ORTHO05D007085 1.5e-98 363.6 315 64.8
Sopen06g029440 Solanum pennellii HOM05D005740 ORTHO05D007085 1.5e-98 363.6 310 64.8
AT5G24490 Arabidopsis thaliana HOM05D005740 ORTHO05D007085 3.3e-98 362.5 319 64.3
Sp2g22850 Schrenkiella parvula HOM05D005740 ORTHO05D007085 4.3e-98 362.1 321 62.0
C09p07180 Brassica napus HOM05D005740 ORTHO05D007085 1.6e-97 360.1 308 64.3
DCAR_020372 Daucus carota HOM05D005740 ORTHO05D007085 1.6e-97 360.1 310 61.3
Gohir.A08G104500 Gossypium hirsutum HOM05D005740 ORTHO05D007085 1.6e-97 360.1 324 62.7
Solyc06g073090.3 Solanum lycopersicum HOM05D005740 ORTHO05D007085 2.8e-97 359.4 309 64.4
BcaC04g23547 Brassica carinata HOM05D005740 ORTHO05D007085 3.6e-97 359.0 308 64.0
Ca_16779_v3 Cicer arietinum L. HOM05D005740 ORTHO05D007085 3.6e-97 359.0 307 64.8
MBI12_g14495_MAGBIO Magnolia biondii HOM05D005740 ORTHO05D007085 4.8e-97 358.6 303 64.7
CANSAT21G1962 Cannabis sativa HOM05D005740 ORTHO05D007085 8.1e-97 357.8 314 65.6
PGSC0003DMG400027021 Solanum tuberosum HOM05D005740 ORTHO05D007085 1.1e-96 357.5 310 64.2
SalBow6G1442 Salvia bowleyana HOM05D005740 ORTHO05D007085 1.8e-96 356.7 317 62.8
BcaNung01238 Brassica carinata HOM05D005740 ORTHO05D007085 1.2e-95 354.0 306 64.1
TAR375G0796 Trochodendron aralioides HOM05D005740 ORTHO05D007085 7.6e-95 351.3 304 63.5
Aa31LG11G3730 Aethionema arabicum HOM05D005740 ORTHO05D007085 9.9e-95 350.9 314 63.1
Medtr3g092720 Medicago truncatula HOM05D005740 ORTHO05D007085 9.9e-95 350.9 299 65.2
EL10Ac3g05180 Beta vulgaris HOM05D005740 ORTHO05D007085 1.3e-94 350.5 290 63.8
Psat5g072000 Pisum sativum HOM05D005740 ORTHO05D007085 1.3e-94 350.5 307 63.2
CDE05G3242 Ceratophyllum demersum HOM05D005740 ORTHO05D007085 1.7e-94 350.1 315 59.4
CDE02G4511 Ceratophyllum demersum HOM05D005740 ORTHO05D007085 2.9e-94 349.4 306 60.8
HanXRQChr04g0105951 Helianthus annuus HOM05D005740 ORTHO05D007085 2.9e-94 349.4 296 62.8
BcaB04g19814 Brassica carinata HOM05D005740 ORTHO05D007085 1.4e-93 347.1 305 63.0
Lsat_1_v5_gn_9_50040 Lactuca sativa HOM05D005740 ORTHO05D007085 7.1e-93 344.7 299 61.5
Nitab4.5_0002895g0020 Nicotiana tabacum HOM05D005740 ORTHO05D007085 7.1e-93 344.7 317 62.1
RcHm_v2.0_Chr1g0382861 Rosa chinensis HOM05D005740 ORTHO05D007085 7.1e-93 344.7 292 62.7
FAN03G0834 Fragaria x ananassa HOM05D005740 ORTHO05D007085 9.3e-93 344.4 276 68.8
FAN10G2230 Fragaria x ananassa HOM05D005740 ORTHO05D007085 1.2e-92 344.0 283 66.4
FAN01G0684 Fragaria x ananassa HOM05D005740 ORTHO05D007085 2.1e-92 343.2 283 66.4
ECA232G2160 Erigeron canadensis HOM05D005740 ORTHO05D007085 2.7e-92 342.8 234 71.4
ATR1155G047 Amborella trichopoda HOM05D005740 ORTHO05D007085 4.6e-92 342.0 248 69.4
Nitab4.5_0000115g0060 Nicotiana tabacum HOM05D005740 ORTHO05D007085 6.0e-92 341.7 233 74.2
SGA_v2.0_scaffold18G08464 Striga asiatica HOM05D005740 ORTHO05D007085 7.9e-92 341.3 288 64.6
AUR62035622 Chenopodium quinoa HOM05D005740 ORTHO05D007085 3.9e-91 339.0 241 71.4
Migut.F00153 Erythranthe guttata HOM05D005740 ORTHO05D007085 3.9e-91 339.0 253 65.6
Aqoxy7G02158 Aquilegia oxysepala HOM05D005740 ORTHO05D007085 5.1e-91 338.6 278 65.1
FvH4_7g32900 Fragaria vesca HOM05D005740 ORTHO05D007085 6.6e-91 338.2 283 66.4
Ah.07g204700 Amaranthus hybridus HOM05D005740 ORTHO05D007085 2.5e-90 336.3 242 71.5
Actinidia28282 Actinidia chinensis HOM05D005740 ORTHO05D007085 5.6e-90 335.1 236 73.7
MELO3C023190.2 Cucumis melo HOM05D005740 ORTHO05D007085 9.6e-90 334.3 215 77.7
Sc13g0010280 Simmondsia chinensis HOM05D005740 ORTHO05D007085 3.1e-88 329.3 294 59.2
PSO782G4352 Papaver somniferum HOM05D005740 ORTHO05D007085 1.2e-87 327.4 276 62.3
unitig_748.g7278 Utricularia gibba HOM05D005740 ORTHO05D007085 2.6e-87 326.2 301 59.5
Actinidia34269 Actinidia chinensis HOM05D005740 ORTHO05D007085 7.6e-87 324.7 267 62.2
PSO063G0961 Papaver somniferum HOM05D005740 ORTHO05D007085 4.9e-86 322.0 276 61.6
Peaxi162Scf00618g00020 Petunia axillaris HOM05D005740 ORTHO05D007085 1.1e-85 320.9 298 60.7
Migut.F00988 Erythranthe guttata HOM05D005740 ORTHO05D007085 1.4e-85 320.5 279 61.6
Lj3A895G46 Lonicera japonica HOM05D005740 ORTHO05D007085 6.0e-84 315.1 245 69.0
HPP92_015050 Vanilla planifolia HOM05D005740 ORTHO05D007085 1.9e-82 310.1 294 57.8
Rhsim03G0215400 Rhododendron simsii HOM05D005740 ORTHO05D007085 2.5e-82 309.7 269 60.6
TPR.G33623 Trifolium pratense HOM05D005740 ORTHO05D007085 2.8e-81 306.2 215 74.4
BcaC09g52277 Brassica carinata HOM05D005740 ORTHO05D007085 4.8e-81 305.4 230 69.1
vmacro06441 Vaccinium macrocarpon HOM05D005740 ORTHO05D007085 4.0e-80 302.4 305 55.4
AUR62006005 Chenopodium quinoa HOM05D005740 ORTHO05D007085 5.3e-80 302.0 219 69.9
vmacro22782 Vaccinium macrocarpon HOM05D005740 ORTHO05D007085 6.9e-80 301.6 307 55.0
Aqoxy7G02157 Aquilegia oxysepala HOM05D005740 ORTHO05D007085 7.1e-77 291.6 206 68.9
Hund09713 Selenicereus undatus HOM05D005740 ORTHO05D007085 3.0e-75 286.2 291 57.0
C01p22900 Brassica napus HOM05D005740 ORTHO05D007085 3.1e-72 276.2 230 64.3
C01p22870 Brassica napus HOM05D005740 ORTHO05D007085 1.3e-70 270.8 230 63.5
BcaC09g52279 Brassica carinata HOM05D005740 ORTHO05D007085 6.5e-70 268.5 203 68.5
Os03g0856500 Oryza sativa ssp. japonica HOM05D005740 ORTHO05D007085 1.4e-69 267.3 253 56.1
Atru.chr12.2428 Acer truncatum HOM05D005740 ORTHO05D007085 2.1e-68 263.5 216 69.0
Zm00001eb064950 Zea mays HOM05D005740 ORTHO05D007085 1.8e-67 260.4 272 51.5
A06p35310 Brassica napus HOM05D005740 ORTHO05D007085 2.3e-67 260.0 210 63.8
BraA06t26457Z Brassica rapa HOM05D005740 ORTHO05D007085 2.3e-67 260.0 210 63.8
AagrBONN_evm.TU.Sc2ySwM_362.2025 Anthoceros agrestis HOM05D005740 ORTHO05D007085 1.4e-64 250.8 244 54.1
Pp3c21_1350 Physcomitrium patens HOM05D005740 ORTHO05D007085 1.4e-64 250.8 258 53.1
Mapoly0136s0019 Marchantia polymorpha HOM05D005740 ORTHO05D007085 3.1e-64 249.6 213 58.7
Pp3c18_22260 Physcomitrium patens HOM05D005740 ORTHO05D007085 4.1e-64 249.2 258 51.9
Dinv29211 Davidia involucrata HOM05D005740 ORTHO05D007085 1.0e-62 244.6 234 60.7
CBR_g44535 Chara braunii HOM05D005740 ORTHO05D007085 2.5e-61 240.0 216 56.0
Potri.012G026375 Populus trichocarpa HOM05D005740 ORTHO05D007085 3.2e-61 239.6 167 74.3
BcaC09g49688 Brassica carinata HOM05D005740 ORTHO05D007085 4.2e-61 239.2 306 50.0
C01p22930 Brassica napus HOM05D005740 ORTHO05D007085 6.1e-60 235.3 206 60.7
CAN.G65.152 Capsicum annuum HOM05D005740 ORTHO05D007085 2.3e-59 233.4 176 69.9
SMO145G0182 Selaginella moellendorffii HOM05D005740 ORTHO05D007085 4.8e-57 225.7 211 53.6
FAN10G1912 Fragaria x ananassa HOM05D005740 ORTHO05D007085 3.1e-56 223.0 165 69.7
Actinidia08698 Actinidia chinensis HOM05D005740 ORTHO05D007085 1.2e-52 211.1 183 60.1
Potri.012G009001 Populus trichocarpa HOM05D005740 ORTHO05D007085 7.5e-42 175.3 118 76.3
Potri.011G055100 Populus trichocarpa HOM05D005740 ORTHO05D007085 8.2e-41 171.8 186 53.8
MCO12G039 Micromonas commoda HOM05D005740 ORTHO05D007085 9.4e-37 158.3 203 46.3
Cre05.g237450 Chlamydomonas reinhardtii HOM05D005740 ORTHO05D007085 5.7e-34 149.1 250 39.2
C01p22950 Brassica napus HOM05D005740 ORTHO05D007085 5.9e-31 139.0 149 51.7
Potri.011G054700 Populus trichocarpa HOM05D005740 ORTHO05D007085 2.2e-25 120.6 82 69.5
PRCOL_00006097 Prasinoderma coloniale HOM05D005740 ORTHO05D007085 1.4e-24 117.9 209 32.5
CAN.G65.153 Capsicum annuum HOM05D000273 ORTHO05D000198 2.7e-23 113.6 65 83.1
BolC1t02230H Brassica oleracea HOM05D005740 ORTHO05D007085 2.8e-20 103.6 70 68.6
Sabra12G0002000 Salix brachista HOM05D000053 ORTHO05D000035 2.2e-17 94.0 81 69.1
Sabra12G0002700 Salix brachista HOM05D005740 ORTHO05D000035 7.0e-16 89.0 78 66.7
C01p22940 Brassica napus HOM05D005740 ORTHO05D007085 5.9e-15 85.9 47 85.1
Sabra12G0007800 Salix brachista HOM05D000053 ORTHO05D000035 1.6e-12 77.8 48 81.2
MBI08_g17822_MAGBIO Magnolia biondii HOM05D005740 ORTHO05D007085 2.8e-12 77.0 46 78.3
Sabra12G0002900 Salix brachista HOM05D005740 ORTHO05D007085 8.0e-12 75.5 45 86.7
Sabra12G0002200 Salix brachista HOM05D005740 ORTHO05D007085 2.3e-11 73.9 70 62.9
C01p22960 Brassica napus HOM05D017401 ORTHO05D020044 7.5e-10 68.9 36 88.9
Pp3c3_26240 Physcomitrium patens HOM05D005740 ORTHO05D007085 7.0e-08 62.4 53 58.5


User provided reference genes

Program Settings