Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.011G074901 Populus trichocarpa HOM05D000580 ORTHO05D006815 4.4e-33 144.1 74 100.0
Potri.011G113742 Populus trichocarpa HOM05D000580 ORTHO05D006815 4.4e-33 144.1 74 100.0
Potri.019G028200 Populus trichocarpa HOM05D000580 ORTHO05D006815 4.4e-33 144.1 74 100.0
Gohir.A03G093700 Gossypium hirsutum HOM05D000580 ORTHO05D006815 3.8e-32 141.0 74 94.6
PGR111G0073 Punica granatum HOM05D000580 ORTHO05D006815 3.8e-32 141.0 74 97.3
Gohir.1Z078601 Gossypium hirsutum HOM05D000580 ORTHO05D006815 4.9e-32 140.6 74 94.6
Gohir.A09G043800 Gossypium hirsutum HOM05D000580 ORTHO05D006815 4.9e-32 140.6 74 94.6
Gohir.D01G102060 Gossypium hirsutum HOM05D000580 ORTHO05D006815 4.9e-32 140.6 74 94.6
Gorai.010G031500 Gossypium raimondii HOM05D000580 ORTHO05D006815 4.9e-32 140.6 74 94.6
Lalb_Chr10g0093221 Lupinus albus HOM05D000580 ORTHO05D006815 6.4e-32 140.2 74 94.6
Lalb_Chr25g0283341 Lupinus albus HOM05D000580 ORTHO05D006815 6.4e-32 140.2 74 94.6
Nn049s41914 Nelumbo nucifera HOM05D000580 ORTHO05D006815 8.4e-32 139.8 74 94.6
CAN.G219.32 Capsicum annuum HOM05D000580 ORTHO05D006815 1.4e-31 139.0 74 94.6
Gohir.1Z049866 Gossypium hirsutum HOM05D000580 ORTHO05D006815 2.4e-31 138.3 74 93.2
Gohir.A12G178620 Gossypium hirsutum HOM05D000580 ORTHO05D006815 2.4e-31 138.3 74 93.2
Gohir.A12G178665 Gossypium hirsutum HOM05D000580 ORTHO05D006815 2.4e-31 138.3 74 93.2
Eucgr.F03245 Eucalyptus grandis HOM05D000580 ORTHO05D006815 3.2e-31 137.9 74 95.9
CSS0026029 Camellia sinensis var. sinensis HOM05D000580 ORTHO05D006815 4.2e-31 137.5 74 91.9
CAN.G131.5 Capsicum annuum HOM05D000580 ORTHO05D006815 4.2e-31 137.5 74 91.9
CAN.G1513.10 Capsicum annuum HOM05D000580 ORTHO05D006815 4.2e-31 137.5 74 91.9
Gohir.A09G103100 Gossypium hirsutum HOM05D000580 ORTHO05D006815 4.2e-31 137.5 74 93.2
Gohir.A12G178630 Gossypium hirsutum HOM05D000580 ORTHO05D006815 7.1e-31 136.7 74 91.9
CAN.G1595.6 Capsicum annuum HOM05D000580 ORTHO05D006815 9.3e-31 136.3 74 91.9
Gohir.A02G100500 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.2e-30 136.0 74 91.9
Gohir.A12G228900 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.6e-30 135.6 74 90.5
PSO548G0006 Papaver somniferum HOM05D000580 ORTHO05D006815 2.1e-30 135.2 74 94.6
HanXRQChr05g0139711 Helianthus annuus HOM05D000580 ORTHO05D006815 4.6e-30 134.0 74 91.9
HanXRQChr05g0152611 Helianthus annuus HOM05D000580 ORTHO05D006815 4.6e-30 134.0 74 91.9
HanXRQChr08g0223961 Helianthus annuus HOM05D000580 ORTHO05D006815 4.6e-30 134.0 74 91.9
HanXRQChr10g0283641 Helianthus annuus HOM05D000580 ORTHO05D006815 4.6e-30 134.0 74 91.9
HanXRQChr10g0284331 Helianthus annuus HOM05D000580 ORTHO05D006815 4.6e-30 134.0 74 91.9
HanXRQChr10g0318111 Helianthus annuus HOM05D000580 ORTHO05D006815 4.6e-30 134.0 74 91.9
HanXRQChr11g0341921 Helianthus annuus HOM05D000580 ORTHO05D006815 4.6e-30 134.0 74 91.9
HanXRQChr14g0459311 Helianthus annuus HOM05D000580 ORTHO05D006815 4.6e-30 134.0 74 91.9
HanXRQCPg0580131 Helianthus annuus HOM05D000580 ORTHO05D006815 4.6e-30 134.0 74 91.9
HanXRQChr02g0038651 Helianthus annuus HOM05D000580 ORTHO05D006815 6.0e-30 133.7 74 90.5
BNapus_Darmor_BZH_scaffold_253p00300 Brassica napus HOM05D000580 ORTHO05D006815 7.8e-30 133.3 74 93.2
BNapus_Darmor_BZH_scaffold_57p00040 Brassica napus HOM05D000580 ORTHO05D006815 7.8e-30 133.3 74 93.2
C06p23100 Brassica napus HOM05D000580 ORTHO05D006815 7.8e-30 133.3 74 93.2
BolSC29t60604H Brassica oleracea HOM05D000580 ORTHO05D006815 7.8e-30 133.3 74 93.2
BolSC35t60664H Brassica oleracea HOM05D000580 ORTHO05D006815 7.8e-30 133.3 74 93.2
BolSC35t60735H Brassica oleracea HOM05D000580 ORTHO05D006815 7.8e-30 133.3 74 93.2
BolSC46t61015H Brassica oleracea HOM05D000580 ORTHO05D006815 7.8e-30 133.3 74 93.2
BolSC47t61080H Brassica oleracea HOM05D000580 ORTHO05D006815 7.8e-30 133.3 74 93.2
BolSC49t61168H Brassica oleracea HOM05D000580 ORTHO05D006815 7.8e-30 133.3 74 93.2
BraA06t25380Z Brassica rapa HOM05D000580 ORTHO05D006815 7.8e-30 133.3 74 93.2
BraSC138t45558Z Brassica rapa HOM05D000580 ORTHO05D006815 7.8e-30 133.3 74 93.2
BraSC58t46498Z Brassica rapa HOM05D000580 ORTHO05D006815 7.8e-30 133.3 74 93.2
BraSC59t46576Z Brassica rapa HOM05D000580 ORTHO05D006815 7.8e-30 133.3 74 93.2
Carub.0006s2561 Capsella rubella HOM05D000580 ORTHO05D006815 7.8e-30 133.3 74 93.2
Eucgr.B01572 Eucalyptus grandis HOM05D000580 ORTHO05D006815 7.8e-30 133.3 69 97.1
SGA_v2.0_scaffold479G52254 Striga asiatica HOM05D000580 ORTHO05D006815 1.7e-29 132.1 74 90.5
AL2G20610 Arabidopsis lyrata HOM05D000580 ORTHO05D006815 2.3e-29 131.7 74 91.9
AL2G21660 Arabidopsis lyrata HOM05D000580 ORTHO05D006815 2.3e-29 131.7 74 91.9
ATCG00710 Arabidopsis thaliana HOM05D000580 ORTHO05D006815 2.3e-29 131.7 74 91.9
CARHR282200 Cardamine hirsuta HOM05D000580 ORTHO05D006815 2.3e-29 131.7 74 91.9
CiPaw.10G124800 Carya illinoinensis HOM05D000580 ORTHO05D006815 2.3e-29 131.7 74 89.2
Gohir.A01G128325 Gossypium hirsutum HOM05D000580 ORTHO05D006815 2.3e-29 131.7 74 87.8
HanXRQChr02g0052691 Helianthus annuus HOM05D000580 ORTHO05D006815 2.3e-29 131.7 74 90.5
Lsat_1_v5_gn_5_67060 Lactuca sativa HOM05D000580 ORTHO05D006815 2.3e-29 131.7 74 91.9
Gohir.A13G110000 Gossypium hirsutum HOM05D000580 ORTHO05D006815 3.0e-29 131.3 74 89.2
Sed0004233 Sechium edule HOM05D000580 ORTHO05D006815 3.9e-29 131.0 74 89.2
Sed0008111 Sechium edule HOM05D000580 ORTHO05D006815 3.9e-29 131.0 74 89.2
Sed0015899 Sechium edule HOM05D000580 ORTHO05D006815 3.9e-29 131.0 74 89.2
Hma1.2p1_0218F.1_g092720 Hydrangea macrophylla HOM05D000580 ORTHO05D006815 6.6e-29 130.2 74 89.2
Hma1.2p1_2223F.1_g317406 Hydrangea macrophylla HOM05D000580 ORTHO05D006815 6.6e-29 130.2 74 89.2
RcHm_v2.0_CPg0501961 Rosa chinensis HOM05D000580 ORTHO05D006815 1.5e-28 129.0 75 89.3
Gohir.A05G326916 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.9e-28 128.6 74 89.2
Gohir.D04G149675 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.9e-28 128.6 71 88.7
LjContig00319g0006223 Lotus japonicus HOM05D000580 ORTHO05D006815 1.9e-28 128.6 74 86.5
LjContig00319g0024255 Lotus japonicus HOM05D000580 ORTHO05D006815 1.9e-28 128.6 74 86.5
Hund29679 Selenicereus undatus HOM05D000580 ORTHO05D006815 1.9e-28 128.6 74 89.2
C06p22890 Brassica napus HOM05D000580 ORTHO05D006815 2.5e-28 128.3 74 90.5
CAN.G1478.5 Capsicum annuum HOM05D000580 ORTHO05D006815 3.3e-28 127.9 85 81.2
Gohir.D02G147200 Gossypium hirsutum HOM05D000580 ORTHO05D006815 3.3e-28 127.9 74 87.8
Gorai.005G164900 Gossypium raimondii HOM05D000580 ORTHO05D006815 5.6e-28 127.1 74 87.8
Gorai.008G286600 Gossypium raimondii HOM05D000580 ORTHO05D006815 7.3e-28 126.7 74 86.5
Potri.002G174001 Populus trichocarpa HOM05D000580 ORTHO05D006815 9.6e-28 126.3 72 88.9
HanXRQChr04g0094321 Helianthus annuus HOM05D000580 ORTHO05D006815 1.3e-27 125.9 74 87.8
BolC2t08916H Brassica oleracea HOM05D000580 ORTHO05D006815 2.1e-27 125.2 70 91.4
CARHR292710 Cardamine hirsuta HOM05D000580 ORTHO05D006815 2.1e-27 125.2 74 87.8
RcHm_v2.0_Chr6g0260481 Rosa chinensis HOM05D000580 ORTHO05D006815 2.1e-27 125.2 75 86.7
CAN.G129.14 Capsicum annuum HOM05D000580 ORTHO05D006815 2.8e-27 124.8 74 83.8
DCAR_032514 Daucus carota HOM05D000580 ORTHO05D006815 3.6e-27 124.4 74 86.5
Gohir.A09G103075 Gossypium hirsutum HOM05D000580 ORTHO05D006815 3.6e-27 124.4 69 91.3
Gohir.A05G286600 Gossypium hirsutum HOM05D000580 ORTHO05D006815 4.8e-27 124.0 74 86.5
Gohir.A05G301450 Gossypium hirsutum HOM05D000580 ORTHO05D006815 4.8e-27 124.0 74 86.5
CAN.G29.17 Capsicum annuum HOM05D000580 ORTHO05D006815 8.1e-27 123.2 74 85.1
Duzib026G0003 Durio zibethinus HOM05D000580 ORTHO05D001362 8.1e-27 123.2 64 92.2
Duzib124G0006 Durio zibethinus HOM05D000580 ORTHO05D001362 8.1e-27 123.2 64 92.2
Duzib237G0002 Durio zibethinus HOM05D000580 ORTHO05D001362 8.1e-27 123.2 64 92.2
Duzib252G0006 Durio zibethinus HOM05D000580 ORTHO05D001362 8.1e-27 123.2 64 92.2
Duzib256G0004 Durio zibethinus HOM05D000580 ORTHO05D001362 8.1e-27 123.2 64 92.2
RcHm_v2.0_Chr4g0390611 Rosa chinensis HOM05D000580 ORTHO05D006815 8.1e-27 123.2 75 86.7
CAN.G2018.9 Capsicum annuum HOM05D000580 ORTHO05D006815 1.1e-26 122.9 74 85.1
HanXRQChr11g0345231 Helianthus annuus HOM05D000580 ORTHO05D006815 1.1e-26 122.9 74 85.1
Gohir.D09G103600 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.8e-26 122.1 74 83.8
Medtr2g062930 Medicago truncatula HOM05D000580 ORTHO05D006815 2.4e-26 121.7 66 87.9
Gohir.D02G096801 Gossypium hirsutum HOM05D000580 ORTHO05D006815 4.0e-26 120.9 67 88.1
Gorai.005G110300 Gossypium raimondii HOM05D000580 ORTHO05D006815 5.3e-26 120.6 67 89.6
Lalb_Chr23g0274371 Lupinus albus HOM05D000580 ORTHO05D006815 1.2e-25 119.4 74 82.4
Prupe.7G021700 Prunus persica HOM05D000580 ORTHO05D006815 1.2e-25 119.4 75 82.7
Sed0008946 Sechium edule HOM05D000580 ORTHO05D006815 1.2e-25 119.4 74 85.1
Hma1.2p1_0149F.1_g066500 Hydrangea macrophylla HOM05D000580 ORTHO05D006815 1.5e-25 119.0 74 79.7
Nitab4.5_0001105g0140 Nicotiana tabacum HOM05D000580 ORTHO05D006815 1.5e-25 119.0 74 82.4
Glyma.03G065000 Glycine max HOM05D000580 ORTHO05D006815 2.6e-25 118.2 74 81.1
Hund08570 Selenicereus undatus HOM05D000580 ORTHO05D006815 8.4e-24 113.2 72 83.3
CAN.G648.1 Capsicum annuum HOM05D000580 ORTHO05D006815 1.4e-23 112.5 74 75.7
Migut.H01967 Erythranthe guttata HOM05D000580 ORTHO05D006815 2.4e-23 111.7 61 91.8
Nitab4.5_0010531g0030 Nicotiana tabacum HOM05D000580 ORTHO05D006815 3.2e-23 111.3 74 81.1
Gohir.A10G070250 Gossypium hirsutum HOM05D000580 ORTHO05D006815 2.1e-22 108.6 55 92.7
EL10Ac1g01194 Beta vulgaris HOM05D000580 ORTHO05D001362 6.0e-22 107.1 63 88.9
Glyma.17G186400 Glycine max HOM05D000580 ORTHO05D006815 7.8e-22 106.7 58 87.9
C07p15330 Brassica napus HOM05D000580 ORTHO05D006815 1.0e-21 106.3 62 82.3
SabraPtG0004100 Salix brachista HOM05D000580 ORTHO05D001785 3.9e-21 104.4 72 73.6
Psat0s7142g0160 Pisum sativum HOM05D000580 ORTHO05D001785 8.7e-21 103.2 61 82.0
Psat6g181560 Pisum sativum HOM05D000580 ORTHO05D001785 8.7e-21 103.2 51 94.1
SabraMtG0010300 Salix brachista HOM05D000580 ORTHO05D006815 8.7e-21 103.2 50 100.0
Peaxi162Scf00299g10016 Petunia axillaris HOM05D000580 ORTHO05D006815 2.5e-20 101.7 65 80.0
Medtr4g051375 Medicago truncatula HOM05D000580 ORTHO05D006815 5.6e-20 100.5 51 92.2
Psat7g045200 Pisum sativum HOM05D000580 ORTHO05D006815 5.6e-20 100.5 61 78.7
Solyc00g500026.1 Solanum lycopersicum HOM05D000580 ORTHO05D006815 9.6e-20 99.8 51 94.1
Solyc00g500072.1 Solanum lycopersicum HOM05D000580 ORTHO05D006815 9.6e-20 99.8 51 94.1
Hund10713 Selenicereus undatus HOM05D000580 ORTHO05D001362 1.6e-19 99.0 71 74.6
Psat0s1446g0280 Pisum sativum HOM05D000580 ORTHO05D001785 2.8e-19 98.2 51 88.2
MELO3C033895.2 Cucumis melo HOM05D000580 ORTHO05D006815 1.8e-18 95.5 74 68.9
HanXRQChr07g0193501 Helianthus annuus HOM05D000580 ORTHO05D006815 1.8e-18 95.5 52 86.5
HanXRQChr01g0020261 Helianthus annuus HOM05D000580 ORTHO05D001785 2.4e-18 95.1 51 88.2
HanXRQChr10g0299321 Helianthus annuus HOM05D000580 ORTHO05D001785 2.4e-18 95.1 51 88.2
HanXRQChr11g0326921 Helianthus annuus HOM05D000580 ORTHO05D001785 2.4e-18 95.1 51 88.2
Peaxi162Scf00527g00037 Petunia axillaris HOM05D000580 ORTHO05D006815 2.4e-18 95.1 51 90.2
HanXRQChr02g0052541 Helianthus annuus HOM05D000580 ORTHO05D001785 1.2e-17 92.8 51 86.3
Nitab4.5_0004376g0090 Nicotiana tabacum HOM05D000580 ORTHO05D006815 1.5e-17 92.4 51 90.2
Ah.10g027190 Amaranthus hybridus HOM05D000580 ORTHO05D001785 2.0e-17 92.0 51 88.2
Ah.10g027480 Amaranthus hybridus HOM05D000580 ORTHO05D001785 2.0e-17 92.0 51 88.2
Ah.10g028960 Amaranthus hybridus HOM05D000580 ORTHO05D001785 5.8e-17 90.5 51 86.3
Lsat_1_v5_gn_5_50340 Lactuca sativa HOM05D000580 ORTHO05D006815 2.2e-16 88.6 51 84.3
Ah.10g027360 Amaranthus hybridus HOM05D000580 ORTHO05D006815 2.9e-16 88.2 54 83.3
Sc07g0006580 Simmondsia chinensis HOM05D000580 ORTHO05D006815 1.4e-15 85.9 53 77.4
Sp5g12490 Schrenkiella parvula HOM05D000580 ORTHO05D006815 3.2e-15 84.7 44 90.9
SMO086G0029 Selaginella moellendorffii HOM05D000580 ORTHO05D006815 4.2e-15 84.3 71 59.2
Glyma.05G092100 Glycine max HOM05D000580 ORTHO05D006815 1.2e-14 82.8 42 88.1
Lalb_Chr01g0009811 Lupinus albus HOM05D000580 ORTHO05D006815 4.6e-14 80.9 41 92.7
LjContig00318g0018353 Lotus japonicus HOM05D000580 ORTHO05D001785 5.1e-13 77.4 43 83.7
Solyc11g006675.1 Solanum lycopersicum HOM05D000580 ORTHO05D006815 1.1e-12 76.3 38 92.1
BolSC29t60484H Brassica oleracea HOM05D000580 ORTHO05D006815 3.3e-12 74.7 40 87.5
MD04G1032200 Malus domestica HOM05D000580 ORTHO05D006815 1.3e-11 72.8 60 56.7
ClCG02G007580 Citrullus lanatus HOM05D000580 ORTHO05D006815 8.1e-11 70.1 36 91.7
QL93p1043_0018 Quercus lobata HOM05D000580 ORTHO05D001785 1.4e-10 69.3 35 94.3
BolSC46t61022H Brassica oleracea HOM05D000580 ORTHO05D006815 2.4e-10 68.6 37 86.5
RcHm_v2.0_Chr2g0140191 Rosa chinensis HOM05D000580 ORTHO05D006815 2.4e-10 68.6 43 79.1
Lalb_Chr23g0274191 Lupinus albus HOM05D000580 ORTHO05D006815 1.2e-09 66.2 38 84.2
Migut.L00683 Erythranthe guttata HOM05D000580 ORTHO05D006815 2.0e-09 65.5 45 66.7
CsaV3_5G028980 Cucumis sativus L. HOM05D000890 ORTHO05D000697 5.5e-07 57.4 36 72.2
Glyma.19G056032 Glycine max HOM05D000580 ORTHO05D006815 9.3e-07 56.6 32 90.6
Migut.D01365 Erythranthe guttata HOM05D000580 ORTHO05D006815 1.2e-06 56.2 28 96.4
Potri.011G074742 Populus trichocarpa HOM05D000580 ORTHO05D006815 1.2e-06 56.2 32 96.9
EL10As4g23447 Beta vulgaris HOM05D000580 ORTHO05D006815 1.6e-06 55.8 37 73.0
BraSC103t45479Z Brassica rapa HOM05D000580 ORTHO05D006815 3.5e-06 54.7 38 84.2


User provided reference genes

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