Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.011G047900 Populus trichocarpa HOM05D003743 ORTHO05D004311 0.0e+00 1181.0 667 100.0
Sabra11G0033300 Salix brachista HOM05D003743 ORTHO05D004311 6.8e-311 1070.1 667 88.5
Potri.004G039500 Populus trichocarpa HOM05D003743 ORTHO05D004311 4.5e-310 1067.4 665 89.2
Sabra04G0024300 Salix brachista HOM05D003743 ORTHO05D004311 1.1e-300 1036.2 665 88.6
Manes.16G024900 Manihot esculenta HOM05D003743 ORTHO05D004311 8.6e-269 930.2 665 79.1
Thecc.06G191600 Theobroma cacao HOM05D003743 ORTHO05D004311 1.7e-256 889.4 666 75.1
Duzib160G0164 Durio zibethinus HOM05D003743 ORTHO05D004311 1.2e-251 873.2 666 73.9
Cpa.g.sc27.76 Carica papaya HOM05D003743 ORTHO05D004311 4.9e-248 861.3 670 75.5
CsaV3_4G005020 Cucumis sativus L. HOM05D003743 ORTHO05D004311 5.4e-247 857.8 666 73.3
Duzib235G1026 Durio zibethinus HOM05D003743 ORTHO05D004311 3.0e-245 852.0 666 72.5
Gohir.D10G024500 Gossypium hirsutum HOM05D003743 ORTHO05D004311 3.3e-244 848.6 667 72.7
Gohir.A10G023800 Gossypium hirsutum HOM05D003743 ORTHO05D004311 9.6e-244 847.0 666 72.7
COL.COLO4_31510 Corchorus olitorius HOM05D003743 ORTHO05D004311 3.6e-243 845.1 666 72.5
TWI23G0181 Tripterygium wilfordii HOM05D003743 ORTHO05D004311 2.4e-242 842.4 665 70.5
Glyma.07G194200 Glycine max HOM05D003743 ORTHO05D004311 4.4e-241 838.2 666 72.5
Gorai.011G025800 Gossypium raimondii HOM05D003743 ORTHO05D004311 4.4e-241 838.2 666 72.2
Prupe.3G050300 Prunus persica HOM05D003743 ORTHO05D004311 2.2e-240 835.9 665 71.7
CiPaw.10G046600 Carya illinoinensis HOM05D003743 ORTHO05D004311 2.9e-240 835.5 666 73.1
Phvul.002G226300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 2.9e-240 835.5 666 73.3
Glyma.13G182500 Glycine max HOM05D003743 ORTHO05D004311 4.9e-240 834.7 666 72.8
VMungo0251G3484 Vigna mungo HOM05D003743 ORTHO05D004311 6.4e-240 834.3 666 73.3
Haze_06507 Corylus avellana HOM05D003743 ORTHO05D004311 4.2e-239 831.6 666 72.7
Dinv07531 Davidia involucrata HOM05D003743 ORTHO05D004311 1.3e-237 826.6 666 70.9
MELO3C017564.2 Cucumis melo HOM05D003743 ORTHO05D004311 2.3e-237 825.9 666 71.0
Psat7g112160 Pisum sativum HOM05D003743 ORTHO05D004311 1.5e-236 823.2 666 70.6
Medtr4g089070 Medicago truncatula HOM05D003743 ORTHO05D004311 9.6e-236 820.5 666 70.6
MD10G1061800 Malus domestica HOM05D003743 ORTHO05D004311 2.8e-235 818.9 666 71.5
RcHm_v2.0_Chr5g0007801 Rosa chinensis HOM05D003743 ORTHO05D004311 1.2e-233 813.5 666 71.0
Eucgr.E03353 Eucalyptus grandis HOM05D003743 ORTHO05D004311 5.8e-233 811.2 667 70.8
Sed0012938 Sechium edule HOM05D003743 ORTHO05D004311 1.7e-232 809.7 666 70.4
Ca_25733_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 2.9e-232 808.9 667 71.4
FAN14G3620 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.4e-231 806.6 668 69.8
Ciclev10028000m.g Citrus clementina HOM05D003743 ORTHO05D004311 3.5e-230 802.0 665 70.2
FAN16G2290 Fragaria x ananassa HOM05D003743 ORTHO05D004311 4.6e-230 801.6 668 69.6
QL05p039342 Quercus lobata HOM05D003743 ORTHO05D004311 3.9e-229 798.5 665 72.3
QL10p057179 Quercus lobata HOM05D003743 ORTHO05D004311 3.9e-229 798.5 665 72.3
TPR.G12063 Trifolium pratense HOM05D003743 ORTHO05D004311 3.9e-229 798.5 666 70.6
FvH4_3g04783 Fragaria vesca HOM05D003743 ORTHO05D004311 6.7e-229 797.7 668 69.2
FAN21G0113 Fragaria x ananassa HOM05D003743 ORTHO05D004311 6.7e-229 797.7 668 69.0
Hma1.2p1_0126F.1_g059170 Hydrangea macrophylla HOM05D003743 ORTHO05D004311 4.3e-228 795.0 666 70.6
Lalb_Chr05g0218341 Lupinus albus HOM05D003743 ORTHO05D004311 4.8e-227 791.6 666 70.3
Atru.chr7.2377 Acer truncatum HOM05D003743 ORTHO05D004311 1.1e-226 790.4 666 71.5
THA.LOC104819165 Tarenaya hassleriana HOM05D003743 ORTHO05D004311 4.0e-226 788.5 666 68.2
FAN03G0627 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.2e-224 782.7 668 68.9
Carub.0002s0416 Capsella rubella HOM05D003743 ORTHO05D004311 3.3e-220 768.8 665 69.3
Thhalv10023338m.g Eutrema salsugineum HOM05D003743 ORTHO05D004311 3.3e-220 768.8 665 67.8
PGR042G1300 Punica granatum HOM05D003743 ORTHO05D004311 3.3e-220 768.8 676 64.9
Aa31LG2G9550 Aethionema arabicum HOM05D003743 ORTHO05D004311 1.6e-219 766.5 666 67.9
CSS0028072 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 1.6e-219 766.5 646 67.5
Lj4g0023106 Lotus japonicus HOM05D003743 ORTHO05D004311 4.8e-219 765.0 667 69.0
TAR627G0572 Trochodendron aralioides HOM05D003743 ORTHO05D004311 1.8e-218 763.1 675 66.5
arahy.Tifrunner.gnm1.ann1.I4CLDN Arachis hypogaea HOM05D003743 ORTHO05D004311 6.9e-218 761.1 666 66.4
AL2G15400 Arabidopsis lyrata HOM05D003743 ORTHO05D004311 4.5e-217 758.4 667 68.7
AT1G61040 Arabidopsis thaliana HOM05D003743 ORTHO05D004311 1.4e-215 753.4 665 68.3
CARHR052180 Cardamine hirsuta HOM05D003743 ORTHO05D004311 9.3e-215 750.7 663 68.5
QL03p016879 Quercus lobata HOM05D003743 ORTHO05D004311 2.1e-214 749.6 665 66.2
BcaC06g31829 Brassica carinata HOM05D003743 ORTHO05D004311 4.6e-214 748.4 671 64.4
Sp2g03480 Schrenkiella parvula HOM05D003743 ORTHO05D004311 1.3e-213 746.9 670 65.8
CANSAT35G0257 Cannabis sativa HOM05D003743 ORTHO05D004311 1.1e-210 737.3 679 67.7
BcaC02g10594 Brassica carinata HOM05D003743 ORTHO05D004311 2.4e-210 736.1 668 65.4
C04p25600 Brassica napus HOM05D003743 ORTHO05D004311 2.4e-210 736.1 668 65.4
Prupe.6G309900 Prunus persica HOM05D003743 ORTHO05D004311 7.7e-209 731.1 664 63.6
TAR629G2996 Trochodendron aralioides HOM05D003743 ORTHO05D004311 2.9e-208 729.2 669 65.3
C01p37700 Brassica napus HOM05D003743 ORTHO05D004311 1.1e-207 727.2 670 64.9
BcaC09g49339 Brassica carinata HOM05D003743 ORTHO05D004311 7.9e-206 721.1 666 64.6
Aqoxy1G03805 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 1.5e-204 716.8 666 63.7
Cc02_g12930 Coffea canephora HOM05D003743 ORTHO05D004311 7.4e-204 714.5 665 61.5
Nitab4.5_0003668g0110 Nicotiana tabacum HOM05D003743 ORTHO05D004311 1.7e-203 713.4 663 62.9
PSO210G5871 Papaver somniferum HOM05D003743 ORTHO05D004311 2.0e-201 706.4 668 65.7
Oeu050830.1 Olea europaea HOM05D003743 ORTHO05D004311 2.6e-201 706.1 665 62.3
PSO170G2796 Papaver somniferum HOM05D003743 ORTHO05D004311 7.7e-201 704.5 668 65.9
Nitab4.5_0003347g0010 Nicotiana tabacum HOM05D003743 ORTHO05D004311 3.8e-200 702.2 663 62.1
Lsat_1_v5_gn_2_40361 Lactuca sativa HOM05D003743 ORTHO05D004311 1.4e-199 700.3 668 62.4
A01p29850 Brassica napus HOM05D003743 ORTHO05D004311 3.2e-199 699.1 674 61.6
RhsimUnG0044100 Rhododendron simsii HOM05D003743 ORTHO05D004311 1.6e-198 696.8 680 65.0
RcHm_v2.0_Chr3g0457571 Rosa chinensis HOM05D003743 ORTHO05D004311 7.9e-198 694.5 665 58.9
Rhsim07G0025200 Rhododendron simsii HOM05D003743 ORTHO05D004311 3.0e-197 692.6 681 64.9
CSS0027200 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 3.9e-197 692.2 667 63.0
SHI01836 Sapria himalayana HOM05D003743 ORTHO05D004311 8.8e-197 691.0 669 59.9
FvH4_6g07870 Fragaria vesca HOM05D003743 ORTHO05D004311 1.7e-195 686.8 665 58.6
Peaxi162Scf00379g00092 Petunia axillaris HOM05D003743 ORTHO05D004311 1.7e-195 686.8 667 61.6
BcaB04g20309 Brassica carinata HOM05D003743 ORTHO05D004311 2.2e-195 686.4 681 61.5
FAN25G1603 Fragaria x ananassa HOM05D003743 ORTHO05D004311 3.7e-195 685.6 621 66.0
FAN14G1138 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.2e-193 680.6 666 58.1
MBI04_g36401_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 1.0e-192 677.6 668 64.4
Nn1g07800 Nelumbo nucifera HOM05D003743 ORTHO05D004311 6.5e-192 674.9 671 60.2
BraA01t03113Z Brassica rapa HOM05D003743 ORTHO05D004311 8.5e-192 674.5 674 59.8
Ah.09g235750 Amaranthus hybridus HOM05D003743 ORTHO05D004311 4.2e-191 672.2 667 62.4
Sopen02g023440 Solanum pennellii HOM05D003743 ORTHO05D004311 4.2e-191 672.2 664 59.8
Solyc02g078580.1 Solanum lycopersicum HOM05D003743 ORTHO05D004311 5.5e-191 671.8 664 59.6
CAN.G1627.16 Capsicum annuum HOM05D003743 ORTHO05D004311 7.2e-191 671.4 669 61.7
FAN09G3903 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.2e-190 670.6 665 56.8
FAN05G4405 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.6e-190 670.2 665 57.6
Glyma.19G170200 Glycine max HOM05D003743 ORTHO05D004311 1.6e-190 670.2 666 62.0
Lj8P171T25 Lonicera japonica HOM05D003743 ORTHO05D004311 1.6e-190 670.2 545 69.0
PGSC0003DMG400022434 Solanum tuberosum HOM05D003743 ORTHO05D004311 1.0e-189 667.5 664 59.0
Glyma.03G168800 Glycine max HOM05D003743 ORTHO05D004311 1.5e-188 663.7 667 60.0
HanXRQChr10g0285841 Helianthus annuus HOM05D003743 ORTHO05D004311 2.6e-188 662.9 669 59.5
Lalb_Chr16g0383591 Lupinus albus HOM05D003743 ORTHO05D004311 2.2e-187 659.8 666 61.6
DCAR_004097 Daucus carota HOM05D003743 ORTHO05D004311 3.7e-187 659.1 671 59.3
Sc05g0007850 Simmondsia chinensis HOM05D003743 ORTHO05D004311 6.3e-187 658.3 666 62.5
Migut.M01180 Erythranthe guttata HOM05D003743 ORTHO05D004311 1.1e-186 657.5 667 58.9
DCAR_008049 Daucus carota HOM05D003743 ORTHO05D004311 4.1e-186 655.6 666 60.5
EL10Ac8g20336 Beta vulgaris HOM05D003743 ORTHO05D004311 1.2e-185 654.1 667 60.0
Lj1g0019037 Lotus japonicus HOM05D003743 ORTHO05D004311 6.5e-184 648.3 670 61.9
HPP92_024423 Vanilla planifolia HOM05D003743 ORTHO05D004311 5.5e-183 645.2 680 56.2
Psat3g052160 Pisum sativum HOM05D003743 ORTHO05D004311 7.2e-183 644.8 668 62.6
Phvul.001G167200 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 1.8e-181 640.2 667 58.9
MD04G1191400 Malus domestica HOM05D003743 ORTHO05D004311 4.4e-180 635.6 664 58.9
SGA_v2.0_scaffold100G29640 Striga asiatica HOM05D003743 ORTHO05D004311 4.4e-180 635.6 665 57.9
Ca_08759_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 1.3e-179 634.0 550 67.8
Ca_30219_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 1.3e-179 634.0 550 67.8
AUR62016972 Chenopodium quinoa HOM05D003743 ORTHO05D004311 1.7e-179 633.6 673 60.6
ATR0763G146 Amborella trichopoda HOM05D003743 ORTHO05D004311 2.2e-179 633.3 674 57.0
MBI16_g34925_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 3.1e-178 629.4 668 62.0
FAN02G2028 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.3e-176 624.0 665 55.0
unitig_748.g8020 Utricularia gibba HOM05D003743 ORTHO05D004311 8.5e-176 621.3 667 55.2
Ah.04g152550 Amaranthus hybridus HOM05D003743 ORTHO05D004311 1.9e-175 620.2 669 55.2
ECA240G0220 Erigeron canadensis HOM05D003743 ORTHO05D004311 1.2e-174 617.5 698 55.9
SalBow8G3648 Salvia bowleyana HOM05D003743 ORTHO05D004311 2.1e-174 616.7 670 55.8
TPR.G30857 Trifolium pratense HOM05D003743 ORTHO05D004311 4.0e-173 612.5 673 57.7
CDE02G2043 Ceratophyllum demersum HOM05D003743 ORTHO05D004311 5.2e-173 612.1 669 59.3
Aqoxy3G03252 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 1.4e-170 604.0 670 54.8
DCAR_004099 Daucus carota HOM05D003743 ORTHO05D004311 1.6e-169 600.5 674 55.9
CANSAT54G1490 Cannabis sativa HOM05D003743 ORTHO05D004311 1.1e-167 594.3 665 54.3
Phvul.001G224300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 9.5e-167 591.3 676 53.4
VMungo1383G2741 Vigna mungo HOM05D003743 ORTHO05D004311 2.8e-166 589.7 675 53.0
VMungo1383G3375 Vigna mungo HOM05D003743 ORTHO05D004311 2.0e-164 583.6 663 54.9
AUR62020979 Chenopodium quinoa HOM05D003743 ORTHO05D004311 7.5e-164 581.6 672 54.2
AUR62014784 Chenopodium quinoa HOM05D003743 ORTHO05D004311 1.8e-162 577.0 658 56.4
SEGI_13209 Sequoiadendron giganteum HOM05D003743 ORTHO05D004311 2.4e-162 576.6 671 53.4
Lalb_Chr04g0260391 Lupinus albus HOM05D003743 ORTHO05D004311 4.1e-162 575.9 675 51.7
Medtr7g099060 Medicago truncatula HOM05D003743 ORTHO05D004311 3.5e-161 572.8 666 55.4
Ca_20186_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 4.4e-156 555.8 701 50.9
MBI16_g34928_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 5.8e-156 555.4 653 58.8
Glyma.03G230500 Glycine max HOM05D003743 ORTHO05D004311 1.4e-154 550.8 682 50.9
TPR.G34103 Trifolium pratense HOM05D003743 ORTHO05D004311 3.5e-153 546.2 687 51.2
Lj1g0026238 Lotus japonicus HOM05D003743 ORTHO05D004311 1.3e-152 544.3 669 51.3
AUR62043193 Chenopodium quinoa HOM05D003743 ORTHO05D004311 6.6e-152 542.0 668 51.8
Psat7g225840 Pisum sativum HOM05D003743 ORTHO05D004311 3.1e-149 533.1 691 51.4
Sc06g0009130 Simmondsia chinensis HOM05D003743 ORTHO05D004311 2.0e-148 530.4 667 54.3
Zm00001eb410600 Zea mays HOM05D003743 ORTHO05D004311 3.5e-145 519.6 675 50.4
Zm00001eb137720 Zea mays HOM05D003743 ORTHO05D004311 1.0e-144 518.1 675 49.5
Medtr4g032885 Medicago truncatula HOM05D003743 ORTHO05D004311 8.6e-144 515.0 684 50.0
arahy.Tifrunner.gnm1.ann1.58ANB0 Arachis hypogaea HOM05D003743 ORTHO05D004311 3.6e-142 509.6 664 52.7
Os12g0535900 Oryza sativa ssp. japonica HOM05D003743 ORTHO05D004311 4.4e-140 502.7 635 49.1
EL10Ac8g18529 Beta vulgaris HOM05D003743 ORTHO05D004311 5.4e-138 495.7 556 55.0
BolC1t03734H Brassica oleracea HOM05D003743 ORTHO05D004311 1.1e-130 471.5 431 66.4
Glyma.13G060000 Glycine max HOM05D003743 ORTHO05D004311 4.2e-130 469.5 404 68.6
FvH4_6g03621 Fragaria vesca HOM05D003743 ORTHO05D004311 1.2e-129 468.0 409 67.5
AagrBONN_evm.TU.Sc2ySwM_368.1522 Anthoceros agrestis HOM05D003743 ORTHO05D004311 2.6e-124 450.3 675 45.5
Pp3c12_17420 Physcomitrium patens HOM05D003743 ORTHO05D004311 7.1e-122 442.2 623 46.2
Actinidia05611 Actinidia chinensis HOM05D003743 ORTHO05D004311 9.3e-122 441.8 408 64.0
Mapoly0001s0024 Marchantia polymorpha HOM05D003743 ORTHO05D004311 9.3e-122 441.8 621 47.3
A03p68920 Brassica napus HOM05D003743 ORTHO05D004311 9.6e-119 431.8 671 46.3
BraSC39t46172Z Brassica rapa HOM05D003743 ORTHO05D004311 1.2e-92 345.1 546 45.1
Mapoly0009s0176 Marchantia polymorpha HOM05D003743 ORTHO05D004311 2.3e-88 330.9 678 39.4
Lj1P877T22 Lonicera japonica HOM05D003743 ORTHO05D004311 2.2e-83 314.3 313 57.2
SMO118G0429 Selaginella moellendorffii HOM05D003743 ORTHO05D004311 2.2e-83 314.3 558 43.0
GSVIVG01006453001 Vitis vinifera HOM05D003743 ORTHO05D004311 6.7e-80 302.8 236 71.2
Oeu016117.1 Olea europaea HOM05D003743 ORTHO05D004311 2.9e-67 260.8 661 36.2
ECA248G2279 Erigeron canadensis HOM05D003743 ORTHO05D004311 3.6e-65 253.8 564 36.3
CBR_g30024 Chara braunii HOM05D003743 ORTHO05D004311 1.8e-61 241.5 649 35.9
Zm00001eb087640 Zea mays HOM05D003743 ORTHO05D004311 1.0e-51 209.1 258 45.0
MBI04_g35990_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 1.1e-45 189.1 217 63.1
Lalb_Chr20g0113451 Lupinus albus HOM05D003743 ORTHO05D004311 1.8e-32 145.2 113 60.2
MD05G1317500 Malus domestica HOM05D003743 ORTHO05D004311 1.2e-25 122.5 127 61.4
FvH4_6g03622 Fragaria vesca HOM05D003743 ORTHO05D004311 1.6e-25 122.1 77 79.2
Aqoxy3G03215 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 2.8e-25 121.3 109 56.9
EL10Ac4g08952 Beta vulgaris HOM05D003743 ORTHO05D004311 8.9e-24 116.3 155 51.6
ECA246G3327 Erigeron canadensis HOM05D001482 ORTHO05D001499 3.2e-21 107.8 79 70.9
SGA_v2.0_scaffold49G18283 Striga asiatica HOM05D003743 ORTHO05D004311 3.0e-19 101.3 132 40.9
Aqoxy3G03214 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 6.6e-19 100.1 78 67.9
Aqoxy3G03213 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 8.6e-19 99.8 74 66.2
Cre03.g196450 Chlamydomonas reinhardtii HOM05D003743 ORTHO05D004311 1.9e-18 98.6 278 28.4
Rhsim02G0125200 Rhododendron simsii HOM05D003743 ORTHO05D004311 6.2e-17 93.6 61 70.5
EL10Ac5g12107 Beta vulgaris HOM05D003743 ORTHO05D004311 5.1e-11 73.9 46 69.6
Nitab4.5_0000556g0130 Nicotiana tabacum HOM05D002396 ORTHO05D002779 1.5e-10 72.4 84 57.1
arahy.Tifrunner.gnm1.ann1.8T1JJH Arachis hypogaea HOM05D003743 ORTHO05D004311 1.7e-06 58.9 108 46.3


User provided reference genes

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