Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.011G023900 Populus trichocarpa HOM05D000161 ORTHO05D005857 1.6e-235 818.9 393 100.0
Sabra11G0014900 Salix brachista HOM05D000161 ORTHO05D005857 1.7e-211 739.2 390 92.1
Atru.chr8.1036 Acer truncatum HOM05D000161 ORTHO05D005857 1.0e-192 676.8 407 83.0
Manes.16G000600 Manihot esculenta HOM05D000161 ORTHO05D005857 2.9e-192 675.2 407 81.8
Ciclev10011903m.g Citrus clementina HOM05D000161 ORTHO05D005857 7.2e-191 670.6 401 82.0
FvH4_6g39170 Fragaria vesca HOM05D000161 ORTHO05D005857 3.4e-188 661.8 394 83.5
FAN05G2261 Fragaria x ananassa HOM05D000161 ORTHO05D005857 5.7e-188 661.0 394 82.7
FAN09G1815 Fragaria x ananassa HOM05D000161 ORTHO05D005857 7.5e-188 660.6 396 83.1
FAN14G2022 Fragaria x ananassa HOM05D000161 ORTHO05D005857 1.3e-187 659.8 395 83.3
FAN02G1171 Fragaria x ananassa HOM05D000161 ORTHO05D005857 3.7e-187 658.3 394 82.5
CANSAT64G1800 Cannabis sativa HOM05D000161 ORTHO05D005857 6.3e-187 657.5 389 83.8
Gorai.004G062500 Gossypium raimondii HOM05D000161 ORTHO05D005857 1.6e-185 652.9 402 82.3
Lj3g0003708 Lotus japonicus HOM05D000161 ORTHO05D005857 2.0e-185 652.5 393 82.2
RcHm_v2.0_Chr2g0153001 Rosa chinensis HOM05D000161 ORTHO05D005857 5.9e-185 651.0 396 82.1
Gohir.A08G050600 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.7e-184 649.4 402 81.6
THA.LOC104826018 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 2.9e-184 648.7 386 82.1
Eucgr.K01354 Eucalyptus grandis HOM05D000161 ORTHO05D005857 3.8e-184 648.3 421 77.2
ClCG07G011020 Citrullus lanatus HOM05D000161 ORTHO05D005857 1.5e-183 646.4 406 79.6
Phvul.008G289900 Phaseolus vulgaris HOM05D000161 ORTHO05D005857 1.5e-183 646.4 399 80.7
CARHR002850 Cardamine hirsuta HOM05D000161 ORTHO05D005857 1.9e-183 646.0 386 82.9
PGR044G2307 Punica granatum HOM05D000161 ORTHO05D005857 1.9e-183 646.0 407 79.4
MD17G1131200 Malus domestica HOM05D000161 ORTHO05D005857 2.5e-183 645.6 401 80.5
Prupe.3G183400 Prunus persica HOM05D000161 ORTHO05D005857 3.3e-183 645.2 395 81.5
AL1G12980 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 9.5e-183 643.7 386 81.9
Sp1g02440 Schrenkiella parvula HOM05D000161 ORTHO05D005857 9.5e-183 643.7 387 81.7
LjContig00081g0009344 Lotus japonicus HOM05D000161 ORTHO05D005857 1.6e-182 642.9 407 79.6
arahy.Tifrunner.gnm1.ann1.S9CZ9A Arachis hypogaea HOM05D000161 ORTHO05D005857 2.8e-182 642.1 380 82.4
Thhalv10007888m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 2.8e-182 642.1 384 82.0
Nn7g38388 Nelumbo nucifera HOM05D000161 ORTHO05D005857 3.6e-182 641.7 401 79.1
AT1G03475 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 4.7e-182 641.3 385 81.8
Haze_00005 Corylus avellana HOM05D000161 ORTHO05D005857 8.0e-182 640.6 395 80.8
MD09G1144600 Malus domestica HOM05D000161 ORTHO05D005857 8.0e-182 640.6 398 80.7
arahy.Tifrunner.gnm1.ann1.DVM8T3 Arachis hypogaea HOM05D000161 ORTHO05D005857 1.0e-181 640.2 394 79.7
CSS0003887 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 1.0e-181 640.2 348 87.4
Glyma.14G003200 Glycine max HOM05D000161 ORTHO05D005857 1.8e-181 639.4 381 82.2
Medtr5g098800 Medicago truncatula HOM05D000161 ORTHO05D005857 1.8e-181 639.4 398 79.9
CiPaw.06G002700 Carya illinoinensis HOM05D000161 ORTHO05D005857 2.3e-181 639.0 347 88.2
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 6.8e-181 637.5 404 78.5
TWI60G0112 Tripterygium wilfordii HOM05D000161 ORTHO05D005857 6.8e-181 637.5 401 78.6
QL04p064724 Quercus lobata HOM05D000161 ORTHO05D005857 8.9e-181 637.1 407 79.4
QL04p064793 Quercus lobata HOM05D000161 ORTHO05D005857 1.2e-180 636.7 405 79.3
Carub.0006s3385 Capsella rubella HOM05D000161 ORTHO05D005857 1.5e-180 636.3 391 79.3
Sc13g0008500 Simmondsia chinensis HOM05D000161 ORTHO05D005857 2.0e-180 636.0 356 85.1
Carub.0001s0261 Capsella rubella HOM05D000161 ORTHO05D005857 2.6e-180 635.6 391 79.8
EL10Ac3g05707 Beta vulgaris HOM05D000161 ORTHO05D005857 5.7e-180 634.4 393 78.6
MBI18_g38427_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D005857 1.3e-179 633.3 391 79.5
Thecc.01G176100 Theobroma cacao HOM05D000161 ORTHO05D005857 1.3e-179 633.3 406 78.1
Duzib138G0552 Durio zibethinus HOM05D000161 ORTHO05D005857 1.7e-179 632.9 403 78.4
A10p02010 Brassica napus HOM05D000161 ORTHO05D005857 2.9e-179 632.1 389 80.5
BraA10t42474Z Brassica rapa HOM05D000161 ORTHO05D005857 3.7e-179 631.7 390 80.0
Cfa016257 Carpinus fangiana HOM05D000161 ORTHO05D005857 3.7e-179 631.7 394 80.2
TPR.G35901 Trifolium pratense HOM05D000161 ORTHO05D005857 3.7e-179 631.7 401 78.8
Dinv05290 Davidia involucrata HOM05D000161 ORTHO05D005857 4.9e-179 631.3 418 77.0
BcaB02g06929 Brassica carinata HOM05D000161 ORTHO05D005857 6.4e-179 630.9 384 80.5
CsaV3_4G007220 Cucumis sativus L. HOM05D000161 ORTHO05D005857 8.3e-179 630.6 398 78.1
BcaC05g24526 Brassica carinata HOM05D000161 ORTHO05D005857 1.1e-178 630.2 391 79.8
BolC5t28975H Brassica oleracea HOM05D000161 ORTHO05D005857 1.1e-178 630.2 391 79.8
C05p01960 Brassica napus HOM05D000161 ORTHO05D005857 1.4e-178 629.8 393 78.6
BraA09t42165Z Brassica rapa HOM05D000161 ORTHO05D005857 5.4e-178 627.9 380 81.1
Psat2g001760 Pisum sativum HOM05D000161 ORTHO05D005857 5.4e-178 627.9 407 76.7
A09p68290 Brassica napus HOM05D000161 ORTHO05D005857 1.6e-177 626.3 380 80.8
C08p52750 Brassica napus HOM05D000161 ORTHO05D005857 1.6e-177 626.3 382 80.9
DCAR_024972 Daucus carota HOM05D000161 ORTHO05D005857 1.6e-177 626.3 335 87.8
Ca_06491_v3 Cicer arietinum L. HOM05D000161 ORTHO05D005857 2.7e-177 625.5 399 77.7
C08p52850 Brassica napus HOM05D000161 ORTHO05D005857 7.8e-177 624.0 382 80.6
Lj6A29G59 Lonicera japonica HOM05D000161 ORTHO05D005857 1.0e-176 623.6 342 87.4
SGA_v2.0_scaffold423G51450 Striga asiatica HOM05D000161 ORTHO05D005857 1.3e-176 623.2 405 77.8
PGSC0003DMG400011264 Solanum tuberosum HOM05D000161 ORTHO05D005857 1.7e-176 622.9 340 87.4
CAN.G465.6 Capsicum annuum HOM05D000161 ORTHO05D005857 3.9e-176 621.7 409 76.5
CDE02G0797 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 3.9e-176 621.7 385 78.7
Rhsim02G0171600 Rhododendron simsii HOM05D000161 ORTHO05D005857 6.6e-176 620.9 371 80.9
Sopen10g001130 Solanum pennellii HOM05D000161 ORTHO05D005857 8.6e-176 620.5 396 77.5
Ah.07g209030 Amaranthus hybridus HOM05D000161 ORTHO05D005857 1.1e-175 620.2 387 78.8
PSO384G2739 Papaver somniferum HOM05D000161 ORTHO05D005857 1.1e-175 620.2 346 85.0
ECA240G1954 Erigeron canadensis HOM05D000161 ORTHO05D005857 1.5e-175 619.8 336 88.1
PSO017G6394 Papaver somniferum HOM05D000161 ORTHO05D005857 1.5e-175 619.8 408 75.7
Solyc10g005110.3 Solanum lycopersicum HOM05D000161 ORTHO05D005857 1.9e-175 619.4 396 78.0
Hund11764 Selenicereus undatus HOM05D000161 ORTHO05D005857 7.3e-175 617.5 394 76.9
vmacro11023 Vaccinium macrocarpon HOM05D000161 ORTHO05D005857 9.5e-175 617.1 464 69.4
HanXRQChr03g0090181 Helianthus annuus HOM05D000161 ORTHO05D005857 1.2e-174 616.7 404 76.7
PSO478G0506 Papaver somniferum HOM05D000161 ORTHO05D005857 4.7e-174 614.8 414 75.1
Nitab4.5_0011255g0010 Nicotiana tabacum HOM05D000161 ORTHO05D005857 1.8e-173 612.8 403 75.9
Aqoxy1G01372 Aquilegia oxysepala HOM05D000161 ORTHO05D005857 1.2e-172 610.1 405 75.8
Migut.M02037 Erythranthe guttata HOM05D000161 ORTHO05D005857 2.0e-172 609.4 402 75.1
CSS0041680 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 2.6e-172 609.0 374 79.4
Nitab4.5_0000075g0030 Nicotiana tabacum HOM05D000161 ORTHO05D005857 2.6e-172 609.0 409 74.3
HPP92_026322 Vanilla planifolia HOM05D000161 ORTHO05D005857 9.8e-172 607.1 385 76.6
Lalb_Chr04g0247041 Lupinus albus HOM05D000161 ORTHO05D005857 1.3e-171 606.7 393 74.8
Peaxi162Scf00005g00134 Petunia axillaris HOM05D000161 ORTHO05D005857 1.3e-171 606.7 406 75.4
TAR624G0726 Trochodendron aralioides HOM05D000161 ORTHO05D005857 1.1e-170 603.6 382 77.5
Gohir.A07G184900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.4e-170 603.2 394 75.4
Gohir.D08G060400 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.4e-170 603.2 301 93.0
GSVIVG01015906001 Vitis vinifera HOM05D000161 ORTHO05D005857 3.2e-170 602.1 308 91.2
unitig_32.g11549 Utricularia gibba HOM05D000161 ORTHO05D005857 5.4e-170 601.3 337 83.4
ATR0763G015 Amborella trichopoda HOM05D000161 ORTHO05D005857 1.2e-169 600.1 407 74.7
BolC8t52801H Brassica oleracea HOM05D000161 ORTHO05D005857 3.5e-169 598.6 386 78.0
MSTRG.16382 Avicennia marina HOM05D000161 ORTHO05D005857 1.7e-168 596.3 401 74.3
Zm00001eb071140 Zea mays HOM05D000161 ORTHO05D005857 1.5e-167 593.2 346 82.1
Hma1.2p1_0166F.1_g073470 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 5.6e-167 591.3 411 73.5
AL6G49730 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 7.3e-167 590.9 371 78.4
SalBow8G0095 Salvia bowleyana HOM05D000161 ORTHO05D005857 9.5e-167 590.5 430 70.9
Os04g0610800 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D005857 8.1e-166 587.4 346 81.5
Sed0024620 Sechium edule HOM05D000161 ORTHO05D005857 1.7e-163 579.7 384 77.3
AUR62021226 Chenopodium quinoa HOM05D000161 ORTHO05D005857 2.2e-163 579.3 350 80.0
TAR626G1695 Trochodendron aralioides HOM05D000161 ORTHO05D005857 4.9e-163 578.2 317 86.1
BcaC07g42252 Brassica carinata HOM05D000161 ORTHO05D005857 4.1e-162 575.1 356 80.3
BcaC07g42243 Brassica carinata HOM05D000161 ORTHO05D005857 7.1e-162 574.3 359 79.7
Gorai.007G172100 Gossypium raimondii HOM05D000161 ORTHO05D005857 9.2e-162 573.9 364 78.3
Sp6g03240 Schrenkiella parvula HOM05D000161 ORTHO05D005857 2.7e-161 572.4 335 81.5
Lsat_1_v5_gn_3_111240 Lactuca sativa HOM05D000161 ORTHO05D005857 2.3e-160 569.3 393 75.6
Cpa.g.sc417.1 Carica papaya HOM05D000161 ORTHO05D005857 6.6e-160 567.8 407 71.7
AUR62016021 Chenopodium quinoa HOM05D000161 ORTHO05D005857 5.6e-159 564.7 396 72.2
MELO3C016226.2 Cucumis melo HOM05D000161 ORTHO05D005857 1.3e-155 553.5 408 71.1
Oeu008990.3 Olea europaea HOM05D000161 ORTHO05D005857 2.9e-155 552.4 497 59.4
Pp3c22_5800 Physcomitrium patens HOM05D000161 ORTHO05D005857 6.4e-155 551.2 348 75.6
Cc09_g04450 Coffea canephora HOM05D000161 ORTHO05D005857 4.1e-154 548.5 550 54.9
AagrBONN_evm.TU.Sc2ySwM_228.282 Anthoceros agrestis HOM05D000161 ORTHO05D005857 1.6e-153 546.6 401 67.3
Oeu008737.1 Olea europaea HOM05D000161 ORTHO05D005857 1.6e-153 546.6 558 55.6
Pp3c21_600 Physcomitrium patens HOM05D000161 ORTHO05D005857 7.8e-153 544.3 345 74.8
Mapoly0039s0053 Marchantia polymorpha HOM05D000161 ORTHO05D005857 3.6e-150 535.4 333 75.1
SMO354G0013 Selaginella moellendorffii HOM05D000161 ORTHO05D005857 6.9e-149 531.2 303 80.9
BcaC07g42260 Brassica carinata HOM05D000161 ORTHO05D005857 3.9e-136 488.8 243 90.9
Gorai.001G214600 Gossypium raimondii HOM05D000161 ORTHO05D005857 5.6e-135 485.0 311 74.6
MCO07G306 Micromonas commoda HOM05D000161 ORTHO05D005857 2.0e-132 476.5 336 68.2
CDE05G1536 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 6.7e-128 461.5 382 65.2
PRCOL_00002331 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 2.4e-125 453.0 307 68.1
Cre02.g085450 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 7.6e-124 448.0 339 63.1
Gohir.D11G161800 Gossypium hirsutum HOM05D000161 ORTHO05D005857 9.0e-117 424.5 289 75.1
Zm00001eb430670 Zea mays HOM05D000161 ORTHO05D005857 4.8e-110 402.1 246 80.9
Thhalv10029252m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 1.8e-104 383.6 212 84.4
CBR_g45705 Chara braunii HOM05D000161 ORTHO05D005857 1.5e-103 380.6 395 51.6
Cfa025537 Carpinus fangiana HOM05D000161 ORTHO05D005857 2.0e-103 380.2 348 56.0
THA.LOC104815952 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 3.7e-102 375.9 212 83.5
Gohir.A11G154900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 5.0e-99 365.5 255 72.5
Gohir.D07G191700 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.6e-92 344.0 204 79.4
Haze_26605 Corylus avellana HOM05D000161 ORTHO05D005857 1.0e-88 331.3 288 53.8
AT4G03205 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 2.4e-85 320.1 187 82.4
PSO339G2005 Papaver somniferum HOM05D000161 ORTHO05D005857 5.9e-68 262.3 127 95.3
MCO09G037 Micromonas commoda HOM05D000161 ORTHO05D005857 1.7e-67 260.8 320 43.8
AagrBONN_evm.TU.Sc2ySwM_228.3299 Anthoceros agrestis HOM05D000161 ORTHO05D005857 2.1e-65 253.8 317 43.2
Mapoly0070s0075 Marchantia polymorpha HOM05D000161 ORTHO05D005857 2.8e-65 253.4 319 41.7
CBR_g23778 Chara braunii HOM05D000161 ORTHO05D005857 2.3e-64 250.4 340 39.7
Pp3c15_4200 Physcomitrium patens HOM05D000161 ORTHO05D005857 4.0e-64 249.6 362 39.2
Cre02.g092600 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 5.6e-58 229.2 311 40.5
arahy.Tifrunner.gnm1.ann1.I5BL8A Arachis hypogaea HOM05D000161 ORTHO05D005857 1.5e-55 221.1 182 63.7
PRCOL_00006910 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 4.9e-54 216.1 327 39.1
SEGI_02394 Sequoiadendron giganteum HOM05D000161 ORTHO05D005857 7.8e-52 208.8 247 42.5
Hma1.2p1_2159F.1_g315510 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 5.8e-47 192.6 114 83.3
arahy.Tifrunner.gnm1.ann1.0Q00UB Arachis hypogaea HOM05D000235 ORTHO05D000147 3.2e-45 186.8 158 62.7
arahy.Tifrunner.gnm1.ann1.F4AYRR Arachis hypogaea HOM05D000161 ORTHO05D005857 2.2e-30 137.5 92 75.0
CARHR251640 Cardamine hirsuta HOM05D000161 ORTHO05D116224 1.1e-24 118.6 159 45.9
SHI00986 Sapria himalayana HOM05D000161 ORTHO05D005857 3.1e-24 117.1 55 90.9
arahy.Tifrunner.gnm1.ann1.0Z8MR5 Arachis hypogaea HOM05D000161 ORTHO05D003903 3.2e-21 107.1 62 85.5
RcHm_v2.0_Chr6g0298511 Rosa chinensis HOM05D000161 ORTHO05D340689 1.2e-20 105.1 174 44.3
CAN.G129.44 Capsicum annuum HOM05D000161 ORTHO05D005857 6.2e-17 92.8 95 60.0
arahy.Tifrunner.gnm1.ann1.6HI1EE Arachis hypogaea HOM05D000161 ORTHO05D005857 9.9e-15 85.5 49 77.6
CARHR251650 Cardamine hirsuta HOM05D000161 ORTHO05D115956 4.9e-14 83.2 105 49.5
arahy.Tifrunner.gnm1.ann1.1EXH41 Arachis hypogaea HOM05D000161 ORTHO05D003770 6.7e-11 72.8 31 90.3
arahy.Tifrunner.gnm1.ann1.DD88BD Arachis hypogaea HOM05D000161 ORTHO05D086871 2.4e-08 64.3 30 83.3
QL05p043498 Quercus lobata HOM05D020871 ORTHO05D337541 2.0e-07 61.2 31 83.9


User provided reference genes

Program Settings