Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G253301 Populus trichocarpa HOM05D001810 ORTHO05D331427 4.4e-46 187.6 92 100.0
BcaC05g27432 Brassica carinata HOM05D001810 ORTHO05D005662 5.4e-12 74.3 58 51.7
Thecc.06G057800 Theobroma cacao HOM05D001810 ORTHO05D005662 5.4e-12 74.3 53 60.4
Actinidia00646 Actinidia chinensis HOM05D001810 ORTHO05D005662 7.0e-12 73.9 48 62.5
Actinidia31125 Actinidia chinensis HOM05D001810 ORTHO05D005662 7.0e-12 73.9 48 62.5
CDE02G1888 Ceratophyllum demersum HOM05D001810 ORTHO05D005662 9.2e-12 73.6 53 60.4
CDE06G0171 Ceratophyllum demersum HOM05D001810 ORTHO05D005662 9.2e-12 73.6 53 60.4
Sc15g0001050 Simmondsia chinensis HOM05D001810 ORTHO05D005662 1.2e-11 73.2 53 58.5
CSS0020822 Camellia sinensis var. sinensis HOM05D001810 ORTHO05D005662 1.6e-11 72.8 53 60.4
Eucgr.F04028 Eucalyptus grandis HOM05D001810 ORTHO05D005662 1.6e-11 72.8 53 58.5
Manes.14G008000 Manihot esculenta HOM05D001810 ORTHO05D005662 1.6e-11 72.8 53 58.5
Potri.010G253200 Populus trichocarpa HOM05D001810 ORTHO05D005662 1.6e-11 72.8 53 58.5
Sabra10G0197000 Salix brachista HOM05D001810 ORTHO05D005662 1.6e-11 72.8 53 58.5
TWI12G1300 Tripterygium wilfordii HOM05D001810 ORTHO05D005662 1.6e-11 72.8 53 58.5
Aqoxy7G02786 Aquilegia oxysepala HOM05D001810 ORTHO05D005662 2.0e-11 72.4 53 56.6
Potri.008G005200 Populus trichocarpa HOM05D001810 ORTHO05D005662 2.0e-11 72.4 53 58.5
PSO063G6510 Papaver somniferum HOM05D001810 ORTHO05D005662 2.7e-11 72.0 50 58.0
PSO170G1341 Papaver somniferum HOM05D001810 ORTHO05D005662 2.7e-11 72.0 50 58.0
GSVIVG01029543001 Vitis vinifera HOM05D001810 ORTHO05D005662 2.7e-11 72.0 53 56.6
CANSAT21G0287 Cannabis sativa HOM05D001810 ORTHO05D005662 3.5e-11 71.6 53 58.5
Glyma.08G224200 Glycine max HOM05D001810 ORTHO05D005662 5.9e-11 70.9 53 56.6
Lj4A856T32 Lonicera japonica HOM05D001810 ORTHO05D005662 5.9e-11 70.9 53 56.6
PGR102G2479 Punica granatum HOM05D001810 ORTHO05D005662 5.9e-11 70.9 53 54.7
QL05p084562 Quercus lobata HOM05D001810 ORTHO05D005662 5.9e-11 70.9 53 56.6
QL05p084936 Quercus lobata HOM05D001810 ORTHO05D005662 5.9e-11 70.9 53 56.6
Atru.chr1.2655 Acer truncatum HOM05D001810 ORTHO05D005662 7.8e-11 70.5 53 54.7
ECA234G3188 Erigeron canadensis HOM05D001810 ORTHO05D005662 7.8e-11 70.5 53 56.6
FAN09G1915 Fragaria x ananassa HOM05D001810 ORTHO05D005662 7.8e-11 70.5 53 58.5
HanXRQChr12g0359701 Helianthus annuus HOM05D001810 ORTHO05D005662 7.8e-11 70.5 53 54.7
MD17G1163300 Malus domestica HOM05D001810 ORTHO05D005662 7.8e-11 70.5 53 56.6
Psat6g190360 Pisum sativum HOM05D001810 ORTHO05D005662 7.8e-11 70.5 63 49.2
C05p33850 Brassica napus HOM05D001810 ORTHO05D005662 1.0e-10 70.1 53 54.7
BolC5t32118H Brassica oleracea HOM05D001810 ORTHO05D005662 1.0e-10 70.1 53 54.7
Cpa.g.sc155.15 Carica papaya HOM05D001810 ORTHO05D005662 1.0e-10 70.1 53 54.7
FvH4_6g37020 Fragaria vesca HOM05D001810 ORTHO05D005662 1.0e-10 70.1 53 56.6
FAN02G3504 Fragaria x ananassa HOM05D001810 ORTHO05D005662 1.0e-10 70.1 53 56.6
FAN05G4051 Fragaria x ananassa HOM05D001810 ORTHO05D005662 1.0e-10 70.1 53 56.6
FAN14G2951 Fragaria x ananassa HOM05D001810 ORTHO05D005662 1.0e-10 70.1 53 56.6
MD09G1164900 Malus domestica HOM05D001810 ORTHO05D005662 1.0e-10 70.1 53 56.6
vmacro17056 Vaccinium macrocarpon HOM05D001810 ORTHO05D005662 1.0e-10 70.1 50 58.0
Aa31LG10G3860 Aethionema arabicum HOM05D001810 ORTHO05D005662 1.3e-10 69.7 53 54.7
ATR0626G056 Amborella trichopoda HOM05D001810 ORTHO05D005662 1.3e-10 69.7 53 54.7
arahy.Tifrunner.gnm1.ann1.02QZYL Arachis hypogaea HOM05D001810 ORTHO05D005662 1.3e-10 69.7 53 54.7
arahy.Tifrunner.gnm1.ann1.PFN72X Arachis hypogaea HOM05D001810 ORTHO05D005662 1.3e-10 69.7 53 54.7
Cfa002156 Carpinus fangiana HOM05D001810 ORTHO05D005662 1.3e-10 69.7 53 54.7
Ca_20967_v3 Cicer arietinum L. HOM05D001810 ORTHO05D005662 1.3e-10 69.7 53 54.7
Haze_16252 Corylus avellana HOM05D001810 ORTHO05D005662 1.3e-10 69.7 53 54.7
HanXRQChr10g0311191 Helianthus annuus HOM05D001810 ORTHO05D005662 1.3e-10 69.7 53 54.7
Hma1.2p1_0517F.1_g170790 Hydrangea macrophylla HOM05D001810 ORTHO05D005662 1.3e-10 69.7 53 54.7
Lj3g0003975 Lotus japonicus HOM05D001810 ORTHO05D005662 1.3e-10 69.7 53 54.7
Medtr4g005450 Medicago truncatula HOM05D001810 ORTHO05D005662 1.3e-10 69.7 53 54.7
Medtr4g094510 Medicago truncatula HOM05D001810 ORTHO05D005662 1.3e-10 69.7 53 54.7
Medtr4g094512 Medicago truncatula HOM05D001810 ORTHO05D005662 1.3e-10 69.7 53 54.7
Psat0s401g0040 Pisum sativum HOM05D001810 ORTHO05D005662 1.3e-10 69.7 53 54.7
Prupe.3G022300 Prunus persica HOM05D001810 ORTHO05D005662 1.3e-10 69.7 53 56.6
RcHm_v2.0_Chr2g0149571 Rosa chinensis HOM05D001810 ORTHO05D005662 1.3e-10 69.7 53 56.6
TPR.G14495 Trifolium pratense HOM05D001810 ORTHO05D005662 1.3e-10 69.7 53 54.7
TWI18G1195 Tripterygium wilfordii HOM05D001810 ORTHO05D005662 1.3e-10 69.7 53 54.7
TAR383G1089 Trochodendron aralioides HOM05D001810 ORTHO05D005662 1.3e-10 69.7 53 54.7
TAR626G1482 Trochodendron aralioides HOM05D001810 ORTHO05D005662 1.3e-10 69.7 53 54.7
HPP92_017124 Vanilla planifolia HOM05D001810 ORTHO05D005662 1.3e-10 69.7 53 56.6
Zm00001eb240810 Zea mays HOM05D001810 ORTHO05D005662 1.3e-10 69.7 53 56.6
BcaB02g11146 Brassica carinata HOM05D001810 ORTHO05D005662 1.7e-10 69.3 50 56.0
Thhalv10011498m.g Eutrema salsugineum HOM05D001810 ORTHO05D005662 1.7e-10 69.3 53 56.6
MBI13_g01741_MAGBIO Magnolia biondii HOM05D001810 ORTHO05D005662 1.7e-10 69.3 53 54.7
Os02g0465400 Oryza sativa ssp. japonica HOM05D001810 ORTHO05D005662 1.7e-10 69.3 53 54.7
PSO063G6016 Papaver somniferum HOM05D001810 ORTHO05D005662 1.7e-10 69.3 54 53.7
AL1G58070 Arabidopsis lyrata HOM05D001810 ORTHO05D005662 2.3e-10 68.9 53 54.7
AT1G50430 Arabidopsis thaliana HOM05D001810 ORTHO05D005662 2.3e-10 68.9 53 54.7
BcaB04g17250 Brassica carinata HOM05D001810 ORTHO05D005662 2.3e-10 68.9 53 54.7
BcaC01g01230 Brassica carinata HOM05D001810 ORTHO05D005662 2.3e-10 68.9 53 54.7
A08p03150 Brassica napus HOM05D001810 ORTHO05D005662 2.3e-10 68.9 53 54.7
C03p89630 Brassica napus HOM05D001810 ORTHO05D005662 2.3e-10 68.9 53 54.7
BolC3t21280H Brassica oleracea HOM05D001810 ORTHO05D005662 2.3e-10 68.9 53 54.7
BraA08t32347Z Brassica rapa HOM05D001810 ORTHO05D005662 2.3e-10 68.9 53 54.7
Carub.0001s3950 Capsella rubella HOM05D001810 ORTHO05D005662 2.3e-10 68.9 53 52.8
CARHR040440 Cardamine hirsuta HOM05D001810 ORTHO05D005662 2.3e-10 68.9 53 54.7
CiPaw.01G091300 Carya illinoinensis HOM05D001810 ORTHO05D005662 2.3e-10 68.9 53 54.7
Lalb_Chr01g0011721 Lupinus albus HOM05D001810 ORTHO05D005662 2.3e-10 68.9 53 54.7
SHI31117 Sapria himalayana HOM05D001810 ORTHO05D005662 2.3e-10 68.9 53 52.8
Ciclev10031631m.g Citrus clementina HOM05D001810 ORTHO05D005662 2.9e-10 68.6 53 54.7
CsaV3_7G033720 Cucumis sativus L. HOM05D001810 ORTHO05D005662 2.9e-10 68.6 53 54.7
Phvul.010G163700 Phaseolus vulgaris HOM05D001810 ORTHO05D005662 2.9e-10 68.6 53 52.8
Rhsim12G0215400 Rhododendron simsii HOM05D001810 ORTHO05D005662 2.9e-10 68.6 45 62.2
Sp1g37260 Schrenkiella parvula HOM05D001810 ORTHO05D005662 2.9e-10 68.6 53 54.7
VMungo0331G1029 Vigna mungo HOM05D001810 ORTHO05D005662 2.9e-10 68.6 53 52.8
COL.COLO4_31578 Corchorus olitorius HOM05D001810 ORTHO05D005662 3.8e-10 68.2 53 56.6
Dinv37780 Davidia involucrata HOM05D001810 ORTHO05D005662 3.8e-10 68.2 53 54.7
SGA_v2.0_scaffold71G23990 Striga asiatica HOM05D001810 ORTHO05D005662 3.8e-10 68.2 53 52.8
Aa31LG8G6830 Aethionema arabicum HOM05D001810 ORTHO05D005662 6.6e-10 67.4 53 52.8
CAN.G1726.4 Capsicum annuum HOM05D001810 ORTHO05D005662 6.6e-10 67.4 78 39.7
Dinv20338 Davidia involucrata HOM05D001810 ORTHO05D005662 6.6e-10 67.4 53 52.8
Duzib192G0783 Durio zibethinus HOM05D001810 ORTHO05D005662 6.6e-10 67.4 53 52.8
Duzib235G1221 Durio zibethinus HOM05D001810 ORTHO05D005662 6.6e-10 67.4 53 52.8
Gohir.A10G002300 Gossypium hirsutum HOM05D001810 ORTHO05D005662 6.6e-10 67.4 53 52.8
Gohir.D10G002300 Gossypium hirsutum HOM05D001810 ORTHO05D005662 6.6e-10 67.4 53 52.8
Gorai.011G002700 Gossypium raimondii HOM05D001810 ORTHO05D005662 6.6e-10 67.4 53 52.8
Solyc06g074090.3 Solanum lycopersicum HOM05D001810 ORTHO05D005662 6.6e-10 67.4 48 56.2
Sopen06g030510 Solanum pennellii HOM05D001810 ORTHO05D005662 6.6e-10 67.4 48 56.2
PGSC0003DMG400005931 Solanum tuberosum HOM05D001810 ORTHO05D005662 6.6e-10 67.4 48 56.2
Ah.08g217780 Amaranthus hybridus HOM05D001810 ORTHO05D005662 8.6e-10 67.0 53 54.7
ClCG09G001620 Citrullus lanatus HOM05D001810 ORTHO05D005662 8.6e-10 67.0 53 50.9
MELO3C024285.2 Cucumis melo HOM05D001810 ORTHO05D005662 8.6e-10 67.0 53 52.8
Migut.I01196 Erythranthe guttata HOM05D001810 ORTHO05D005662 8.6e-10 67.0 53 54.7
HanXRQChr08g0213091 Helianthus annuus HOM05D001810 ORTHO05D005662 8.6e-10 67.0 53 52.8
Sed0001452 Sechium edule HOM05D001810 ORTHO05D005662 8.6e-10 67.0 53 52.8
AUR62001341 Chenopodium quinoa HOM05D001810 ORTHO05D005662 1.1e-09 66.6 53 52.8
AUR62025664 Chenopodium quinoa HOM05D001810 ORTHO05D005662 1.1e-09 66.6 53 52.8
DCAR_001417 Daucus carota HOM05D001810 ORTHO05D005662 1.1e-09 66.6 53 52.8
Lsat_1_v5_gn_5_137241 Lactuca sativa HOM05D001810 ORTHO05D005662 1.1e-09 66.6 53 52.8
Nn8g40833 Nelumbo nucifera HOM05D001810 ORTHO05D005662 1.1e-09 66.6 53 52.8
Cc04_g00180 Coffea canephora HOM05D001810 ORTHO05D005662 1.5e-09 66.2 53 54.7
SEGI_37942 Sequoiadendron giganteum HOM05D001810 ORTHO05D005662 1.9e-09 65.9 85 41.2
MSTRG.10877 Avicennia marina HOM05D001810 ORTHO05D005662 2.5e-09 65.5 53 54.7
CAN.G226.21 Capsicum annuum HOM05D001810 ORTHO05D005662 2.5e-09 65.5 53 50.9
Oeu035091.1 Olea europaea HOM05D001810 ORTHO05D005662 2.5e-09 65.5 53 50.9
Solyc01g009310.3 Solanum lycopersicum HOM05D001810 ORTHO05D005662 2.5e-09 65.5 53 50.9
Sopen01g004810 Solanum pennellii HOM05D001810 ORTHO05D005662 2.5e-09 65.5 53 50.9
PGSC0003DMG400014722 Solanum tuberosum HOM05D001810 ORTHO05D005662 2.5e-09 65.5 53 50.9
unitig_32.g11009 Utricularia gibba HOM05D001810 ORTHO05D005662 2.5e-09 65.5 53 52.8
Nitab4.5_0000380g0100 Nicotiana tabacum HOM05D001810 ORTHO05D005662 3.3e-09 65.1 48 54.2
Nitab4.5_0001491g0070 Nicotiana tabacum HOM05D001810 ORTHO05D005662 3.3e-09 65.1 48 54.2
SalBow6G2819 Salvia bowleyana HOM05D001810 ORTHO05D005662 3.3e-09 65.1 53 50.9
Peaxi162Scf00098g00116 Petunia axillaris HOM05D001810 ORTHO05D005662 4.3e-09 64.7 48 52.1
EL10Ac7g18159 Beta vulgaris HOM05D001810 ORTHO05D005662 5.6e-09 64.3 53 50.9
THA.LOC104809047 Tarenaya hassleriana HOM05D001810 ORTHO05D005662 5.6e-09 64.3 53 50.9
Hund05675 Selenicereus undatus HOM05D001810 ORTHO05D005662 7.3e-09 63.9 53 52.8
Oeu038371.1 Olea europaea HOM05D001810 ORTHO05D005662 9.5e-09 63.5 53 52.8
SMO365G0024 Selaginella moellendorffii HOM05D001810 ORTHO05D005662 3.6e-08 61.6 53 50.9
Mapoly0015s0079 Marchantia polymorpha HOM05D001810 ORTHO05D005662 4.7e-08 61.2 48 50.0
AagrBONN_evm.TU.Sc2ySwM_117.1409 Anthoceros agrestis HOM05D001810 ORTHO05D005662 4.0e-07 58.2 48 50.0
CBR_g20307 Chara braunii HOM05D001523 ORTHO05D000937 4.0e-07 58.2 42 57.1
Pp3c24_10460 Physcomitrium patens HOM05D001810 ORTHO05D005662 2.0e-06 55.8 48 47.9
Pp3c16_25140 Physcomitrium patens HOM05D001810 ORTHO05D005662 4.4e-06 54.7 48 50.0


User provided reference genes

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