Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '362', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A05p20170' => 'bna', 'A06p12730' => 'bna', 'A08p03150' => 'bna', 'A09p60740' => 'bna', 'Aa31LG10G3860' => 'aar', 'Aa31LG7G1260' => 'aar', 'Aa31LG8G6830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3545' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1420' => 'aag', 'Actinidia00646' => 'ach', 'Actinidia21653' => 'ach', 'Actinidia21885' => 'ach', 'Actinidia31125' => 'ach', 'Ah.08g217780' => 'amhyb', 'Ah.10g033760' => 'amhyb', 'Ah.15g094310' => 'amhyb', 'AL1G28980' => 'aly', 'AL1G58070' => 'aly', 'Aqoxy7G02764' => 'aox', 'Aqoxy7G02786' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02QZYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PFN72X' => 'arhy', 'AT1G16810' => 'ath', 'AT1G50430' => 'ath', 'ATR0626G056' => 'atr', 'ATR0691G256' => 'atr', 'Atru.chr1.2655' => 'acertr', 'AUR62001340' => 'cqu', 'AUR62001341' => 'cqu', 'AUR62020628' => 'cqu', 'AUR62025664' => 'cqu', 'AUR62025665' => 'cqu', 'AUR62038755' => 'cqu', 'BcaB02g06674' => 'bca', 'BcaB02g11146' => 'bca', 'BcaB04g17250' => 'bca', 'BcaC01g01230' => 'bca', 'BcaC05g25537' => 'bca', 'BcaC05g27431' => 'bca', 'BcaC05g27432' => 'bca', 'BcaC07g41382' => 'bca', 'BcaC07g41457' => 'bca', 'BolC3t21280H' => 'bol', 'BolC5t30218H' => 'bol', 'BolC5t32118H' => 'bol', 'BolC8t51975H' => 'bol', 'BraA05t20926Z' => 'bra', 'BraA06t24433Z' => 'bra', 'BraA08t32347Z' => 'bra', 'BraA09t41447Z' => 'bra', 'C03p89630' => 'bna', 'C05p15030' => 'bna', 'C05p33850' => 'bna', 'C08p44320' => 'bna', 'CAN.G1364.5' => 'can', 'CAN.G1726.4' => 'can', 'CAN.G226.21' => 'can', 'CAN.G484.40' => 'can', 'CANSAT01G0013' => 'cansat', 'CANSAT21G0287' => 'cansat', 'CANSAT21G1552' => 'cansat', 'CANSAT78G1543' => 'cansat', 'CARHR017280' => 'chi', 'CARHR040440' => 'chi', 'Carub.0001s1654' => 'cru', 'Carub.0001s3950' => 'cru', 'Ca_15678_v3' => 'car', 'Ca_20967_v3' => 'car', 'Ca_20968_v3' => 'car', 'CBR_g28897' => 'cbr', 'Cc04_g00170' => 'ccan', 'Cc04_g00180' => 'ccan', 'CDE02G1888' => 'cde', 'CDE02G3623' => 'cde', 'CDE06G0171' => 'cde', 'Cfa002155' => 'cfa', 'Cfa002156' => 'cfa', 'Ciclev10031631m.g' => 'ccl', 'Ciclev10033044m.g' => 'ccl', 'CiPaw.01G091100' => 'cil', 'CiPaw.01G091300' => 'cil', 'CiPaw.01G091800' => 'cil', 'CiPaw.07G214500' => 'cil', 'ClCG05G017450' => 'cla', 'ClCG07G014650' => 'cla', 'ClCG09G001620' => 'cla', 'COL.COLO4_18611' => 'col', 'COL.COLO4_30375' => 'col', 'COL.COLO4_31159' => 'col', 'COL.COLO4_31163' => 'col', 'COL.COLO4_31164' => 'col', 'COL.COLO4_31578' => 'col', 'Cpa.g.sc155.14' => 'cpa', 'Cpa.g.sc155.15' => 'cpa', 'Cpa.g.sc244.9' => 'cpa', 'Cre02.g076800' => 'cre', 'Cre16.g686900' => 'cre', 'CsaV3_3G030510' => 'csa', 'CsaV3_3G046950' => 'csa', 'CsaV3_7G033720' => 'csa', 'CSS0008124' => 'camsi', 'CSS0020822' => 'camsi', 'CSS0035377' => 'camsi', 'DCAR_001417' => 'dca', 'DCAR_014051' => 'dca', 'Dinv20338' => 'din', 'Dinv37779' => 'din', 'Dinv37780' => 'din', 'Duzib168G0090' => 'dzi', 'Duzib192G0783' => 'dzi', 'Duzib235G1221' => 'dzi', 'ECA234G3188' => 'eca', 'ECA246G3918' => 'eca', 'EL10Ac2g03718' => 'bvu', 'EL10Ac7g18157' => 'bvu', 'EL10Ac7g18159' => 'bvu', 'Eucgr.C02104' => 'egr', 'Eucgr.F04028' => 'egr', 'Eucgr.F04029' => 'egr', 'FAN02G1520' => 'fan', 'FAN02G3504' => 'fan', 'FAN05G3232' => 'fan', 'FAN05G4051' => 'fan', 'FAN09G1684' => 'fan', 'FAN09G1915' => 'fan', 'FAN14G2000' => 'fan', 'FAN14G2951' => 'fan', 'FAN15G3686' => 'fan', 'FAN20G1539' => 'fan', 'FAN24G2833' => 'fan', 'FvH4_2g30690' => 'fve', 'FvH4_6g37010' => 'fve', 'FvH4_6g37020' => 'fve', 'Glyma.07G002500' => 'gma', 'Glyma.08G224200' => 'gma', 'Glyma.08G224300' => 'gma', 'Gohir.A05G114700' => 'ghi', 'Gohir.A06G106800' => 'ghi', 'Gohir.A10G002300' => 'ghi', 'Gohir.D05G115100' => 'ghi', 'Gohir.D06G109000' => 'ghi', 'Gohir.D10G002300' => 'ghi', 'Gorai.009G119200' => 'gra', 'Gorai.010G123800' => 'gra', 'Gorai.011G002700' => 'gra', 'GSVIVG01029543001' => 'vvi', 'GSVIVG01029544001' => 'vvi', 'HanXRQChr08g0213091' => 'han', 'HanXRQChr10g0311191' => 'han', 'HanXRQChr12g0359701' => 'han', 'HanXRQChr17g0540351' => 'han', 'Haze_16252' => 'cav', 'Haze_16256' => 'cav', 'Hma1.2p1_0517F.1_g170790' => 'hma', 'Hma1.2p1_0517F.1_g170800' => 'hma', 'Hma1.2p1_0517F.1_g170810' => 'hma', 'Hma1.2p1_1111F.1_g258420' => 'hma', 'Hma1.2p1_3200F.1_g333903' => 'hma', 'Hma1.2p1_3612F.1_g337040' => 'hma', 'HPP92_015317' => 'vpl', 'HPP92_017118' => 'vpl', 'HPP92_017119' => 'vpl', 'HPP92_017124' => 'vpl', 'Hund03278' => 'sun', 'Hund05674' => 'sun', 'Hund05675' => 'sun', 'Lalb_Chr01g0011711' => 'lal', 'Lalb_Chr01g0011721' => 'lal', 'Lj3g0003412' => 'lja', 'Lj3g0003975' => 'lja', 'Lj3g0014374' => 'lja', 'Lj4A856T32' => 'lonja', 'Lsat_1_v5_gn_3_32561' => 'lsa', 'Lsat_1_v5_gn_5_137241' => 'lsa', 'Manes.14G008000' => 'mes', 'Manes.14G008100' => 'mes', 'Manes.16G136700' => 'mes', 'Mapoly0014s0045' => 'mpo', 'Mapoly0015s0079' => 'mpo', 'Mapoly0041s0083' => 'mpo', 'MBI13_g01741_MAGBIO' => 'mbi', 'MBI18_g21785_MAGBIO' => 'mbi', 'MCO04G359' => 'mco', 'MCO05G241' => 'mco', 'MCO11G332' => 'mco', 'MCO11G445' => 'mco', 'MD09G1164900' => 'mdo', 'MD09G1165100' => 'mdo', 'MD15G1110000' => 'mdo', 'MD17G1163300' => 'mdo', 'Medtr3g108730' => 'mtr', 'Medtr4g005440' => 'mtr', 'Medtr4g005450' => 'mtr', 'Medtr4g005480' => 'mtr', 'Medtr4g094510' => 'mtr', 'Medtr4g094512' => 'mtr', 'MELO3C003642.2' => 'cme', 'MELO3C024285.2' => 'cme', 'MELO3C026711.2' => 'cme', 'Migut.A00444' => 'egut', 'Migut.I01196' => 'egut', 'Migut.I01198' => 'egut', 'MSTRG.10877' => 'ama', 'MSTRG.24617' => 'ama', 'Nitab4.5_0000380g0100' => 'nta', 'Nitab4.5_0000570g0230' => 'nta', 'Nitab4.5_0001491g0070' => 'nta', 'Nitab4.5_0003259g0090' => 'nta', 'Nitab4.5_0003466g0020' => 'nta', 'Nn8g40833' => 'nnu', 'Nn8g40872' => 'nnu', 'Oeu004122.1' => 'oeu', 'Oeu035091.1' => 'oeu', 'Oeu038371.1' => 'oeu', 'Oeu038372.1' => 'oeu', 'Oeu055219.1' => 'oeu', 'Os02g0465400' => 'osa', 'Os02g0727500' => 'osa', 'Peaxi162Scf00045g01524' => 'pax', 'Peaxi162Scf00098g00116' => 'pax', 'Peaxi162Scf00700g00150' => 'pax', 'PGR031G1504' => 'pgr', 'PGR102G2479' => 'pgr', 'PGSC0003DMG400004633' => 'stu', 'PGSC0003DMG400005931' => 'stu', 'PGSC0003DMG400014722' => 'stu', 'Phvul.009G100233' => 'pvu', 'Phvul.010G163700' => 'pvu', 'Phvul.010G163800' => 'pvu', 'Potri.005G174400' => 'ptr', 'Potri.008G005200' => 'ptr', 'Potri.010G253200' => 'ptr', 'Potri.010G253301' => 'ptr', 'Potri.010G253400' => 'ptr', 'Pp3c10_8030' => 'ppa', 'Pp3c16_25140' => 'ppa', 'Pp3c24_10460' => 'ppa', 'PRCOL_00001616' => 'pco', 'PRCOL_00002858' => 'pco', 'PRCOL_00003237' => 'pco', 'Prupe.1G462200' => 'ppe', 'Prupe.3G022300' => 'ppe', 'Prupe.3G022600' => 'ppe', 'Psat0s401g0040' => 'psa', 'Psat6g190360' => 'psa', 'Psat7g264280' => 'psa', 'PSO063G6016' => 'pso', 'PSO063G6510' => 'pso', 'PSO144G0068' => 'pso', 'PSO170G1341' => 'pso', 'PSO170G2381' => 'pso', 'QL03p005885' => 'qlo', 'QL03p006486' => 'qlo', 'QL05p084468' => 'qlo', 'QL05p084482' => 'qlo', 'QL05p084549' => 'qlo', 'QL05p084562' => 'qlo', 'QL05p084856' => 'qlo', 'QL05p084923' => 'qlo', 'QL05p084936' => 'qlo', 'RcHm_v2.0_Chr2g0149551' => 'rch', 'RcHm_v2.0_Chr2g0149571' => 'rch', 'RcHm_v2.0_Chr6g0312211' => 'rch', 'Rhsim03G0090500' => 'rsi', 'Rhsim08G0250000' => 'rsi', 'Rhsim12G0215300' => 'rsi', 'Rhsim12G0215400' => 'rsi', 'Sabra05G0131400' => 'sbr', 'Sabra10G0197000' => 'sbr', 'Sabra10G0197100' => 'sbr', 'SalBow6G2819' => 'sbo', 'SalBow6G5510' => 'sbo', 'Sc09g0007920' => 'sci', 'Sc15g0001050' => 'sci', 'Sc15g0001110' => 'sci', 'Sed0001452' => 'sed', 'Sed0017404' => 'sed', 'Sed0017750' => 'sed', 'SEGI_03617' => 'sgi', 'SEGI_24153' => 'sgi', 'SEGI_29786' => 'sgi', 'SEGI_37942' => 'sgi', 'SGA_v2.0_scaffold122G33266' => 'sas', 'SGA_v2.0_scaffold27G11665' => 'sas', 'SGA_v2.0_scaffold71G23990' => 'sas', 'SHI03290' => 'shi', 'SHI10896' => 'shi', 'SHI31117' => 'shi', 'SHI31118' => 'shi', 'SHI38233' => 'shi', 'SMO141G0269' => 'smo', 'SMO365G0024' => 'smo', 'Solyc01g009310.3' => 'sly', 'Solyc06g074090.3' => 'sly', 'Solyc12g099490.3' => 'sly', 'Sopen01g004810' => 'spe', 'Sopen06g030510' => 'spe', 'Sopen08g002120' => 'spe', 'Sopen12g034160' => 'spe', 'Sp1g14950' => 'spa', 'Sp1g37260' => 'spa', 'TAR383G0925' => 'tar', 'TAR383G1089' => 'tar', 'TAR626G1359' => 'tar', 'TAR626G1482' => 'tar', 'TAR633G0644' => 'tar', 'THA.LOC104803879' => 'tha', 'THA.LOC104809047' => 'tha', 'THA.LOC104812330' => 'tha', 'Thecc.06G057700' => 'tca', 'Thecc.06G057800' => 'tca', 'Thecc.09G005100' => 'tca', 'Thhalv10009062m.g' => 'esa', 'Thhalv10011498m.g' => 'esa', 'TPR.G12495' => 'tpr', 'TPR.G14495' => 'tpr', 'TPR.G38727' => 'tpr', 'TPR.G38754' => 'tpr', 'TWI12G1300' => 'twi', 'TWI18G1195' => 'twi', 'unitig_0.g1638' => 'ugi', 'unitig_32.g11009' => 'ugi', 'vmacro06801' => 'vma', 'vmacro16534' => 'vma', 'vmacro16540' => 'vma', 'vmacro17056' => 'vma', 'vmacro17966' => 'vma', 'VMungo0331G1029' => 'vmu', 'VMungo0331G1664' => 'vmu', 'Zm00001eb140150' => 'zma', 'Zm00001eb186960' => 'zma', 'Zm00001eb189570' => 'zma', 'Zm00001eb189580' => 'zma', 'Zm00001eb189590' => 'zma', 'Zm00001eb189600' => 'zma', 'Zm00001eb189610' => 'zma', 'Zm00001eb189620' => 'zma', 'Zm00001eb189630' => 'zma', 'Zm00001eb189640' => 'zma', 'Zm00001eb189650' => 'zma', 'Zm00001eb189660' => 'zma', 'Zm00001eb189670' => 'zma', 'Zm00001eb189680' => 'zma', 'Zm00001eb189690' => 'zma', 'Zm00001eb189700' => 'zma', 'Zm00001eb189710' => 'zma', 'Zm00001eb189720' => 'zma', 'Zm00001eb189730' => 'zma', 'Zm00001eb189740' => 'zma', 'Zm00001eb189750' => 'zma', 'Zm00001eb189760' => 'zma', 'Zm00001eb189780' => 'zma', 'Zm00001eb189790' => 'zma', 'Zm00001eb189800' => 'zma', 'Zm00001eb189810' => 'zma', 'Zm00001eb189820' => 'zma', 'Zm00001eb229720' => 'zma', 'Zm00001eb229740' => 'zma', 'Zm00001eb240810' => 'zma', 'Zm00001eb253430' => 'zma', 'Zm00001eb360860' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001810', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001810' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '362', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001810' ) ), 'genes' => array( 'A05p20170' => 'bna', 'A06p12730' => 'bna', 'A08p03150' => 'bna', 'A09p60740' => 'bna', 'Aa31LG10G3860' => 'aar', 'Aa31LG7G1260' => 'aar', 'Aa31LG8G6830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3545' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1420' => 'aag', 'Actinidia00646' => 'ach', 'Actinidia21653' => 'ach', 'Actinidia21885' => 'ach', 'Actinidia31125' => 'ach', 'Ah.08g217780' => 'amhyb', 'Ah.10g033760' => 'amhyb', 'Ah.15g094310' => 'amhyb', 'AL1G28980' => 'aly', 'AL1G58070' => 'aly', 'Aqoxy7G02764' => 'aox', 'Aqoxy7G02786' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02QZYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PFN72X' => 'arhy', 'AT1G16810' => 'ath', 'AT1G50430' => 'ath', 'ATR0626G056' => 'atr', 'ATR0691G256' => 'atr', 'Atru.chr1.2655' => 'acertr', 'AUR62001340' => 'cqu', 'AUR62001341' => 'cqu', 'AUR62020628' => 'cqu', 'AUR62025664' => 'cqu', 'AUR62025665' => 'cqu', 'AUR62038755' => 'cqu', 'BcaB02g06674' => 'bca', 'BcaB02g11146' => 'bca', 'BcaB04g17250' => 'bca', 'BcaC01g01230' => 'bca', 'BcaC05g25537' => 'bca', 'BcaC05g27431' => 'bca', 'BcaC05g27432' => 'bca', 'BcaC07g41382' => 'bca', 'BcaC07g41457' => 'bca', 'BolC3t21280H' => 'bol', 'BolC5t30218H' => 'bol', 'BolC5t32118H' => 'bol', 'BolC8t51975H' => 'bol', 'BraA05t20926Z' => 'bra', 'BraA06t24433Z' => 'bra', 'BraA08t32347Z' => 'bra', 'BraA09t41447Z' => 'bra', 'C03p89630' => 'bna', 'C05p15030' => 'bna', 'C05p33850' => 'bna', 'C08p44320' => 'bna', 'CAN.G1364.5' => 'can', 'CAN.G1726.4' => 'can', 'CAN.G226.21' => 'can', 'CAN.G484.40' => 'can', 'CANSAT01G0013' => 'cansat', 'CANSAT21G0287' => 'cansat', 'CANSAT21G1552' => 'cansat', 'CANSAT78G1543' => 'cansat', 'CARHR017280' => 'chi', 'CARHR040440' => 'chi', 'Carub.0001s1654' => 'cru', 'Carub.0001s3950' => 'cru', 'Ca_15678_v3' => 'car', 'Ca_20967_v3' => 'car', 'Ca_20968_v3' => 'car', 'CBR_g28897' => 'cbr', 'Cc04_g00170' => 'ccan', 'Cc04_g00180' => 'ccan', 'CDE02G1888' => 'cde', 'CDE02G3623' => 'cde', 'CDE06G0171' => 'cde', 'Cfa002155' => 'cfa', 'Cfa002156' => 'cfa', 'Ciclev10031631m.g' => 'ccl', 'Ciclev10033044m.g' => 'ccl', 'CiPaw.01G091100' => 'cil', 'CiPaw.01G091300' => 'cil', 'CiPaw.01G091800' => 'cil', 'CiPaw.07G214500' => 'cil', 'ClCG05G017450' => 'cla', 'ClCG07G014650' => 'cla', 'ClCG09G001620' => 'cla', 'COL.COLO4_18611' => 'col', 'COL.COLO4_30375' => 'col', 'COL.COLO4_31159' => 'col', 'COL.COLO4_31163' => 'col', 'COL.COLO4_31164' => 'col', 'COL.COLO4_31578' => 'col', 'Cpa.g.sc155.14' => 'cpa', 'Cpa.g.sc155.15' => 'cpa', 'Cpa.g.sc244.9' => 'cpa', 'Cre02.g076800' => 'cre', 'Cre16.g686900' => 'cre', 'CsaV3_3G030510' => 'csa', 'CsaV3_3G046950' => 'csa', 'CsaV3_7G033720' => 'csa', 'CSS0008124' => 'camsi', 'CSS0020822' => 'camsi', 'CSS0035377' => 'camsi', 'DCAR_001417' => 'dca', 'DCAR_014051' => 'dca', 'Dinv20338' => 'din', 'Dinv37779' => 'din', 'Dinv37780' => 'din', 'Duzib168G0090' => 'dzi', 'Duzib192G0783' => 'dzi', 'Duzib235G1221' => 'dzi', 'ECA234G3188' => 'eca', 'ECA246G3918' => 'eca', 'EL10Ac2g03718' => 'bvu', 'EL10Ac7g18157' => 'bvu', 'EL10Ac7g18159' => 'bvu', 'Eucgr.C02104' => 'egr', 'Eucgr.F04028' => 'egr', 'Eucgr.F04029' => 'egr', 'FAN02G1520' => 'fan', 'FAN02G3504' => 'fan', 'FAN05G3232' => 'fan', 'FAN05G4051' => 'fan', 'FAN09G1684' => 'fan', 'FAN09G1915' => 'fan', 'FAN14G2000' => 'fan', 'FAN14G2951' => 'fan', 'FAN15G3686' => 'fan', 'FAN20G1539' => 'fan', 'FAN24G2833' => 'fan', 'FvH4_2g30690' => 'fve', 'FvH4_6g37010' => 'fve', 'FvH4_6g37020' => 'fve', 'Glyma.07G002500' => 'gma', 'Glyma.08G224200' => 'gma', 'Glyma.08G224300' => 'gma', 'Gohir.A05G114700' => 'ghi', 'Gohir.A06G106800' => 'ghi', 'Gohir.A10G002300' => 'ghi', 'Gohir.D05G115100' => 'ghi', 'Gohir.D06G109000' => 'ghi', 'Gohir.D10G002300' => 'ghi', 'Gorai.009G119200' => 'gra', 'Gorai.010G123800' => 'gra', 'Gorai.011G002700' => 'gra', 'GSVIVG01029543001' => 'vvi', 'GSVIVG01029544001' => 'vvi', 'HanXRQChr08g0213091' => 'han', 'HanXRQChr10g0311191' => 'han', 'HanXRQChr12g0359701' => 'han', 'HanXRQChr17g0540351' => 'han', 'Haze_16252' => 'cav', 'Haze_16256' => 'cav', 'Hma1.2p1_0517F.1_g170790' => 'hma', 'Hma1.2p1_0517F.1_g170800' => 'hma', 'Hma1.2p1_0517F.1_g170810' => 'hma', 'Hma1.2p1_1111F.1_g258420' => 'hma', 'Hma1.2p1_3200F.1_g333903' => 'hma', 'Hma1.2p1_3612F.1_g337040' => 'hma', 'HPP92_015317' => 'vpl', 'HPP92_017118' => 'vpl', 'HPP92_017119' => 'vpl', 'HPP92_017124' => 'vpl', 'Hund03278' => 'sun', 'Hund05674' => 'sun', 'Hund05675' => 'sun', 'Lalb_Chr01g0011711' => 'lal', 'Lalb_Chr01g0011721' => 'lal', 'Lj3g0003412' => 'lja', 'Lj3g0003975' => 'lja', 'Lj3g0014374' => 'lja', 'Lj4A856T32' => 'lonja', 'Lsat_1_v5_gn_3_32561' => 'lsa', 'Lsat_1_v5_gn_5_137241' => 'lsa', 'Manes.14G008000' => 'mes', 'Manes.14G008100' => 'mes', 'Manes.16G136700' => 'mes', 'Mapoly0014s0045' => 'mpo', 'Mapoly0015s0079' => 'mpo', 'Mapoly0041s0083' => 'mpo', 'MBI13_g01741_MAGBIO' => 'mbi', 'MBI18_g21785_MAGBIO' => 'mbi', 'MCO04G359' => 'mco', 'MCO05G241' => 'mco', 'MCO11G332' => 'mco', 'MCO11G445' => 'mco', 'MD09G1164900' => 'mdo', 'MD09G1165100' => 'mdo', 'MD15G1110000' => 'mdo', 'MD17G1163300' => 'mdo', 'Medtr3g108730' => 'mtr', 'Medtr4g005440' => 'mtr', 'Medtr4g005450' => 'mtr', 'Medtr4g005480' => 'mtr', 'Medtr4g094510' => 'mtr', 'Medtr4g094512' => 'mtr', 'MELO3C003642.2' => 'cme', 'MELO3C024285.2' => 'cme', 'MELO3C026711.2' => 'cme', 'Migut.A00444' => 'egut', 'Migut.I01196' => 'egut', 'Migut.I01198' => 'egut', 'MSTRG.10877' => 'ama', 'MSTRG.24617' => 'ama', 'Nitab4.5_0000380g0100' => 'nta', 'Nitab4.5_0000570g0230' => 'nta', 'Nitab4.5_0001491g0070' => 'nta', 'Nitab4.5_0003259g0090' => 'nta', 'Nitab4.5_0003466g0020' => 'nta', 'Nn8g40833' => 'nnu', 'Nn8g40872' => 'nnu', 'Oeu004122.1' => 'oeu', 'Oeu035091.1' => 'oeu', 'Oeu038371.1' => 'oeu', 'Oeu038372.1' => 'oeu', 'Oeu055219.1' => 'oeu', 'Os02g0465400' => 'osa', 'Os02g0727500' => 'osa', 'Peaxi162Scf00045g01524' => 'pax', 'Peaxi162Scf00098g00116' => 'pax', 'Peaxi162Scf00700g00150' => 'pax', 'PGR031G1504' => 'pgr', 'PGR102G2479' => 'pgr', 'PGSC0003DMG400004633' => 'stu', 'PGSC0003DMG400005931' => 'stu', 'PGSC0003DMG400014722' => 'stu', 'Phvul.009G100233' => 'pvu', 'Phvul.010G163700' => 'pvu', 'Phvul.010G163800' => 'pvu', 'Potri.005G174400' => 'ptr', 'Potri.008G005200' => 'ptr', 'Potri.010G253200' => 'ptr', 'Potri.010G253301' => 'ptr', 'Potri.010G253400' => 'ptr', 'Pp3c10_8030' => 'ppa', 'Pp3c16_25140' => 'ppa', 'Pp3c24_10460' => 'ppa', 'PRCOL_00001616' => 'pco', 'PRCOL_00002858' => 'pco', 'PRCOL_00003237' => 'pco', 'Prupe.1G462200' => 'ppe', 'Prupe.3G022300' => 'ppe', 'Prupe.3G022600' => 'ppe', 'Psat0s401g0040' => 'psa', 'Psat6g190360' => 'psa', 'Psat7g264280' => 'psa', 'PSO063G6016' => 'pso', 'PSO063G6510' => 'pso', 'PSO144G0068' => 'pso', 'PSO170G1341' => 'pso', 'PSO170G2381' => 'pso', 'QL03p005885' => 'qlo', 'QL03p006486' => 'qlo', 'QL05p084468' => 'qlo', 'QL05p084482' => 'qlo', 'QL05p084549' => 'qlo', 'QL05p084562' => 'qlo', 'QL05p084856' => 'qlo', 'QL05p084923' => 'qlo', 'QL05p084936' => 'qlo', 'RcHm_v2.0_Chr2g0149551' => 'rch', 'RcHm_v2.0_Chr2g0149571' => 'rch', 'RcHm_v2.0_Chr6g0312211' => 'rch', 'Rhsim03G0090500' => 'rsi', 'Rhsim08G0250000' => 'rsi', 'Rhsim12G0215300' => 'rsi', 'Rhsim12G0215400' => 'rsi', 'Sabra05G0131400' => 'sbr', 'Sabra10G0197000' => 'sbr', 'Sabra10G0197100' => 'sbr', 'SalBow6G2819' => 'sbo', 'SalBow6G5510' => 'sbo', 'Sc09g0007920' => 'sci', 'Sc15g0001050' => 'sci', 'Sc15g0001110' => 'sci', 'Sed0001452' => 'sed', 'Sed0017404' => 'sed', 'Sed0017750' => 'sed', 'SEGI_03617' => 'sgi', 'SEGI_24153' => 'sgi', 'SEGI_29786' => 'sgi', 'SEGI_37942' => 'sgi', 'SGA_v2.0_scaffold122G33266' => 'sas', 'SGA_v2.0_scaffold27G11665' => 'sas', 'SGA_v2.0_scaffold71G23990' => 'sas', 'SHI03290' => 'shi', 'SHI10896' => 'shi', 'SHI31117' => 'shi', 'SHI31118' => 'shi', 'SHI38233' => 'shi', 'SMO141G0269' => 'smo', 'SMO365G0024' => 'smo', 'Solyc01g009310.3' => 'sly', 'Solyc06g074090.3' => 'sly', 'Solyc12g099490.3' => 'sly', 'Sopen01g004810' => 'spe', 'Sopen06g030510' => 'spe', 'Sopen08g002120' => 'spe', 'Sopen12g034160' => 'spe', 'Sp1g14950' => 'spa', 'Sp1g37260' => 'spa', 'TAR383G0925' => 'tar', 'TAR383G1089' => 'tar', 'TAR626G1359' => 'tar', 'TAR626G1482' => 'tar', 'TAR633G0644' => 'tar', 'THA.LOC104803879' => 'tha', 'THA.LOC104809047' => 'tha', 'THA.LOC104812330' => 'tha', 'Thecc.06G057700' => 'tca', 'Thecc.06G057800' => 'tca', 'Thecc.09G005100' => 'tca', 'Thhalv10009062m.g' => 'esa', 'Thhalv10011498m.g' => 'esa', 'TPR.G12495' => 'tpr', 'TPR.G14495' => 'tpr', 'TPR.G38727' => 'tpr', 'TPR.G38754' => 'tpr', 'TWI12G1300' => 'twi', 'TWI18G1195' => 'twi', 'unitig_0.g1638' => 'ugi', 'unitig_32.g11009' => 'ugi', 'vmacro06801' => 'vma', 'vmacro16534' => 'vma', 'vmacro16540' => 'vma', 'vmacro17056' => 'vma', 'vmacro17966' => 'vma', 'VMungo0331G1029' => 'vmu', 'VMungo0331G1664' => 'vmu', 'Zm00001eb140150' => 'zma', 'Zm00001eb186960' => 'zma', 'Zm00001eb189570' => 'zma', 'Zm00001eb189580' => 'zma', 'Zm00001eb189590' => 'zma', 'Zm00001eb189600' => 'zma', 'Zm00001eb189610' => 'zma', 'Zm00001eb189620' => 'zma', 'Zm00001eb189630' => 'zma', 'Zm00001eb189640' => 'zma', 'Zm00001eb189650' => 'zma', 'Zm00001eb189660' => 'zma', 'Zm00001eb189670' => 'zma', 'Zm00001eb189680' => 'zma', 'Zm00001eb189690' => 'zma', 'Zm00001eb189700' => 'zma', 'Zm00001eb189710' => 'zma', 'Zm00001eb189720' => 'zma', 'Zm00001eb189730' => 'zma', 'Zm00001eb189740' => 'zma', 'Zm00001eb189750' => 'zma', 'Zm00001eb189760' => 'zma', 'Zm00001eb189780' => 'zma', 'Zm00001eb189790' => 'zma', 'Zm00001eb189800' => 'zma', 'Zm00001eb189810' => 'zma', 'Zm00001eb189820' => 'zma', 'Zm00001eb229720' => 'zma', 'Zm00001eb229740' => 'zma', 'Zm00001eb240810' => 'zma', 'Zm00001eb253430' => 'zma', 'Zm00001eb360860' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001810' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001810' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001810' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001810' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '362', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A05p20170' => 'bna', 'A06p12730' => 'bna', 'A08p03150' => 'bna', 'A09p60740' => 'bna', 'Aa31LG10G3860' => 'aar', 'Aa31LG7G1260' => 'aar', 'Aa31LG8G6830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3545' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1420' => 'aag', 'Actinidia00646' => 'ach', 'Actinidia21653' => 'ach', 'Actinidia21885' => 'ach', 'Actinidia31125' => 'ach', 'Ah.08g217780' => 'amhyb', 'Ah.10g033760' => 'amhyb', 'Ah.15g094310' => 'amhyb', 'AL1G28980' => 'aly', 'AL1G58070' => 'aly', 'Aqoxy7G02764' => 'aox', 'Aqoxy7G02786' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02QZYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PFN72X' => 'arhy', 'AT1G16810' => 'ath', 'AT1G50430' => 'ath', 'ATR0626G056' => 'atr', 'ATR0691G256' => 'atr', 'Atru.chr1.2655' => 'acertr', 'AUR62001340' => 'cqu', 'AUR62001341' => 'cqu', 'AUR62020628' => 'cqu', 'AUR62025664' => 'cqu', 'AUR62025665' => 'cqu', 'AUR62038755' => 'cqu', 'BcaB02g06674' => 'bca', 'BcaB02g11146' => 'bca', 'BcaB04g17250' => 'bca', 'BcaC01g01230' => 'bca', 'BcaC05g25537' => 'bca', 'BcaC05g27431' => 'bca', 'BcaC05g27432' => 'bca', 'BcaC07g41382' => 'bca', 'BcaC07g41457' => 'bca', 'BolC3t21280H' => 'bol', 'BolC5t30218H' => 'bol', 'BolC5t32118H' => 'bol', 'BolC8t51975H' => 'bol', 'BraA05t20926Z' => 'bra', 'BraA06t24433Z' => 'bra', 'BraA08t32347Z' => 'bra', 'BraA09t41447Z' => 'bra', 'C03p89630' => 'bna', 'C05p15030' => 'bna', 'C05p33850' => 'bna', 'C08p44320' => 'bna', 'CAN.G1364.5' => 'can', 'CAN.G1726.4' => 'can', 'CAN.G226.21' => 'can', 'CAN.G484.40' => 'can', 'CANSAT01G0013' => 'cansat', 'CANSAT21G0287' => 'cansat', 'CANSAT21G1552' => 'cansat', 'CANSAT78G1543' => 'cansat', 'CARHR017280' => 'chi', 'CARHR040440' => 'chi', 'Carub.0001s1654' => 'cru', 'Carub.0001s3950' => 'cru', 'Ca_15678_v3' => 'car', 'Ca_20967_v3' => 'car', 'Ca_20968_v3' => 'car', 'CBR_g28897' => 'cbr', 'Cc04_g00170' => 'ccan', 'Cc04_g00180' => 'ccan', 'CDE02G1888' => 'cde', 'CDE02G3623' => 'cde', 'CDE06G0171' => 'cde', 'Cfa002155' => 'cfa', 'Cfa002156' => 'cfa', 'Ciclev10031631m.g' => 'ccl', 'Ciclev10033044m.g' => 'ccl', 'CiPaw.01G091100' => 'cil', 'CiPaw.01G091300' => 'cil', 'CiPaw.01G091800' => 'cil', 'CiPaw.07G214500' => 'cil', 'ClCG05G017450' => 'cla', 'ClCG07G014650' => 'cla', 'ClCG09G001620' => 'cla', 'COL.COLO4_18611' => 'col', 'COL.COLO4_30375' => 'col', 'COL.COLO4_31159' => 'col', 'COL.COLO4_31163' => 'col', 'COL.COLO4_31164' => 'col', 'COL.COLO4_31578' => 'col', 'Cpa.g.sc155.14' => 'cpa', 'Cpa.g.sc155.15' => 'cpa', 'Cpa.g.sc244.9' => 'cpa', 'Cre02.g076800' => 'cre', 'Cre16.g686900' => 'cre', 'CsaV3_3G030510' => 'csa', 'CsaV3_3G046950' => 'csa', 'CsaV3_7G033720' => 'csa', 'CSS0008124' => 'camsi', 'CSS0020822' => 'camsi', 'CSS0035377' => 'camsi', 'DCAR_001417' => 'dca', 'DCAR_014051' => 'dca', 'Dinv20338' => 'din', 'Dinv37779' => 'din', 'Dinv37780' => 'din', 'Duzib168G0090' => 'dzi', 'Duzib192G0783' => 'dzi', 'Duzib235G1221' => 'dzi', 'ECA234G3188' => 'eca', 'ECA246G3918' => 'eca', 'EL10Ac2g03718' => 'bvu', 'EL10Ac7g18157' => 'bvu', 'EL10Ac7g18159' => 'bvu', 'Eucgr.C02104' => 'egr', 'Eucgr.F04028' => 'egr', 'Eucgr.F04029' => 'egr', 'FAN02G1520' => 'fan', 'FAN02G3504' => 'fan', 'FAN05G3232' => 'fan', 'FAN05G4051' => 'fan', 'FAN09G1684' => 'fan', 'FAN09G1915' => 'fan', 'FAN14G2000' => 'fan', 'FAN14G2951' => 'fan', 'FAN15G3686' => 'fan', 'FAN20G1539' => 'fan', 'FAN24G2833' => 'fan', 'FvH4_2g30690' => 'fve', 'FvH4_6g37010' => 'fve', 'FvH4_6g37020' => 'fve', 'Glyma.07G002500' => 'gma', 'Glyma.08G224200' => 'gma', 'Glyma.08G224300' => 'gma', 'Gohir.A05G114700' => 'ghi', 'Gohir.A06G106800' => 'ghi', 'Gohir.A10G002300' => 'ghi', 'Gohir.D05G115100' => 'ghi', 'Gohir.D06G109000' => 'ghi', 'Gohir.D10G002300' => 'ghi', 'Gorai.009G119200' => 'gra', 'Gorai.010G123800' => 'gra', 'Gorai.011G002700' => 'gra', 'GSVIVG01029543001' => 'vvi', 'GSVIVG01029544001' => 'vvi', 'HanXRQChr08g0213091' => 'han', 'HanXRQChr10g0311191' => 'han', 'HanXRQChr12g0359701' => 'han', 'HanXRQChr17g0540351' => 'han', 'Haze_16252' => 'cav', 'Haze_16256' => 'cav', 'Hma1.2p1_0517F.1_g170790' => 'hma', 'Hma1.2p1_0517F.1_g170800' => 'hma', 'Hma1.2p1_0517F.1_g170810' => 'hma', 'Hma1.2p1_1111F.1_g258420' => 'hma', 'Hma1.2p1_3200F.1_g333903' => 'hma', 'Hma1.2p1_3612F.1_g337040' => 'hma', 'HPP92_015317' => 'vpl', 'HPP92_017118' => 'vpl', 'HPP92_017119' => 'vpl', 'HPP92_017124' => 'vpl', 'Hund03278' => 'sun', 'Hund05674' => 'sun', 'Hund05675' => 'sun', 'Lalb_Chr01g0011711' => 'lal', 'Lalb_Chr01g0011721' => 'lal', 'Lj3g0003412' => 'lja', 'Lj3g0003975' => 'lja', 'Lj3g0014374' => 'lja', 'Lj4A856T32' => 'lonja', 'Lsat_1_v5_gn_3_32561' => 'lsa', 'Lsat_1_v5_gn_5_137241' => 'lsa', 'Manes.14G008000' => 'mes', 'Manes.14G008100' => 'mes', 'Manes.16G136700' => 'mes', 'Mapoly0014s0045' => 'mpo', 'Mapoly0015s0079' => 'mpo', 'Mapoly0041s0083' => 'mpo', 'MBI13_g01741_MAGBIO' => 'mbi', 'MBI18_g21785_MAGBIO' => 'mbi', 'MCO04G359' => 'mco', 'MCO05G241' => 'mco', 'MCO11G332' => 'mco', 'MCO11G445' => 'mco', 'MD09G1164900' => 'mdo', 'MD09G1165100' => 'mdo', 'MD15G1110000' => 'mdo', 'MD17G1163300' => 'mdo', 'Medtr3g108730' => 'mtr', 'Medtr4g005440' => 'mtr', 'Medtr4g005450' => 'mtr', 'Medtr4g005480' => 'mtr', 'Medtr4g094510' => 'mtr', 'Medtr4g094512' => 'mtr', 'MELO3C003642.2' => 'cme', 'MELO3C024285.2' => 'cme', 'MELO3C026711.2' => 'cme', 'Migut.A00444' => 'egut', 'Migut.I01196' => 'egut', 'Migut.I01198' => 'egut', 'MSTRG.10877' => 'ama', 'MSTRG.24617' => 'ama', 'Nitab4.5_0000380g0100' => 'nta', 'Nitab4.5_0000570g0230' => 'nta', 'Nitab4.5_0001491g0070' => 'nta', 'Nitab4.5_0003259g0090' => 'nta', 'Nitab4.5_0003466g0020' => 'nta', 'Nn8g40833' => 'nnu', 'Nn8g40872' => 'nnu', 'Oeu004122.1' => 'oeu', 'Oeu035091.1' => 'oeu', 'Oeu038371.1' => 'oeu', 'Oeu038372.1' => 'oeu', 'Oeu055219.1' => 'oeu', 'Os02g0465400' => 'osa', 'Os02g0727500' => 'osa', 'Peaxi162Scf00045g01524' => 'pax', 'Peaxi162Scf00098g00116' => 'pax', 'Peaxi162Scf00700g00150' => 'pax', 'PGR031G1504' => 'pgr', 'PGR102G2479' => 'pgr', 'PGSC0003DMG400004633' => 'stu', 'PGSC0003DMG400005931' => 'stu', 'PGSC0003DMG400014722' => 'stu', 'Phvul.009G100233' => 'pvu', 'Phvul.010G163700' => 'pvu', 'Phvul.010G163800' => 'pvu', 'Potri.005G174400' => 'ptr', 'Potri.008G005200' => 'ptr', 'Potri.010G253200' => 'ptr', 'Potri.010G253301' => 'ptr', 'Potri.010G253400' => 'ptr', 'Pp3c10_8030' => 'ppa', 'Pp3c16_25140' => 'ppa', 'Pp3c24_10460' => 'ppa', 'PRCOL_00001616' => 'pco', 'PRCOL_00002858' => 'pco', 'PRCOL_00003237' => 'pco', 'Prupe.1G462200' => 'ppe', 'Prupe.3G022300' => 'ppe', 'Prupe.3G022600' => 'ppe', 'Psat0s401g0040' => 'psa', 'Psat6g190360' => 'psa', 'Psat7g264280' => 'psa', 'PSO063G6016' => 'pso', 'PSO063G6510' => 'pso', 'PSO144G0068' => 'pso', 'PSO170G1341' => 'pso', 'PSO170G2381' => 'pso', 'QL03p005885' => 'qlo', 'QL03p006486' => 'qlo', 'QL05p084468' => 'qlo', 'QL05p084482' => 'qlo', 'QL05p084549' => 'qlo', 'QL05p084562' => 'qlo', 'QL05p084856' => 'qlo', 'QL05p084923' => 'qlo', 'QL05p084936' => 'qlo', 'RcHm_v2.0_Chr2g0149551' => 'rch', 'RcHm_v2.0_Chr2g0149571' => 'rch', 'RcHm_v2.0_Chr6g0312211' => 'rch', 'Rhsim03G0090500' => 'rsi', 'Rhsim08G0250000' => 'rsi', 'Rhsim12G0215300' => 'rsi', 'Rhsim12G0215400' => 'rsi', 'Sabra05G0131400' => 'sbr', 'Sabra10G0197000' => 'sbr', 'Sabra10G0197100' => 'sbr', 'SalBow6G2819' => 'sbo', 'SalBow6G5510' => 'sbo', 'Sc09g0007920' => 'sci', 'Sc15g0001050' => 'sci', 'Sc15g0001110' => 'sci', 'Sed0001452' => 'sed', 'Sed0017404' => 'sed', 'Sed0017750' => 'sed', 'SEGI_03617' => 'sgi', 'SEGI_24153' => 'sgi', 'SEGI_29786' => 'sgi', 'SEGI_37942' => 'sgi', 'SGA_v2.0_scaffold122G33266' => 'sas', 'SGA_v2.0_scaffold27G11665' => 'sas', 'SGA_v2.0_scaffold71G23990' => 'sas', 'SHI03290' => 'shi', 'SHI10896' => 'shi', 'SHI31117' => 'shi', 'SHI31118' => 'shi', 'SHI38233' => 'shi', 'SMO141G0269' => 'smo', 'SMO365G0024' => 'smo', 'Solyc01g009310.3' => 'sly', 'Solyc06g074090.3' => 'sly', 'Solyc12g099490.3' => 'sly', 'Sopen01g004810' => 'spe', 'Sopen06g030510' => 'spe', 'Sopen08g002120' => 'spe', 'Sopen12g034160' => 'spe', 'Sp1g14950' => 'spa', 'Sp1g37260' => 'spa', 'TAR383G0925' => 'tar', 'TAR383G1089' => 'tar', 'TAR626G1359' => 'tar', 'TAR626G1482' => 'tar', 'TAR633G0644' => 'tar', 'THA.LOC104803879' => 'tha', 'THA.LOC104809047' => 'tha', 'THA.LOC104812330' => 'tha', 'Thecc.06G057700' => 'tca', 'Thecc.06G057800' => 'tca', 'Thecc.09G005100' => 'tca', 'Thhalv10009062m.g' => 'esa', 'Thhalv10011498m.g' => 'esa', 'TPR.G12495' => 'tpr', 'TPR.G14495' => 'tpr', 'TPR.G38727' => 'tpr', 'TPR.G38754' => 'tpr', 'TWI12G1300' => 'twi', 'TWI18G1195' => 'twi', 'unitig_0.g1638' => 'ugi', 'unitig_32.g11009' => 'ugi', 'vmacro06801' => 'vma', 'vmacro16534' => 'vma', 'vmacro16540' => 'vma', 'vmacro17056' => 'vma', 'vmacro17966' => 'vma', 'VMungo0331G1029' => 'vmu', 'VMungo0331G1664' => 'vmu', 'Zm00001eb140150' => 'zma', 'Zm00001eb186960' => 'zma', 'Zm00001eb189570' => 'zma', 'Zm00001eb189580' => 'zma', 'Zm00001eb189590' => 'zma', 'Zm00001eb189600' => 'zma', 'Zm00001eb189610' => 'zma', 'Zm00001eb189620' => 'zma', 'Zm00001eb189630' => 'zma', 'Zm00001eb189640' => 'zma', 'Zm00001eb189650' => 'zma', 'Zm00001eb189660' => 'zma', 'Zm00001eb189670' => 'zma', 'Zm00001eb189680' => 'zma', 'Zm00001eb189690' => 'zma', 'Zm00001eb189700' => 'zma', 'Zm00001eb189710' => 'zma', 'Zm00001eb189720' => 'zma', 'Zm00001eb189730' => 'zma', 'Zm00001eb189740' => 'zma', 'Zm00001eb189750' => 'zma', 'Zm00001eb189760' => 'zma', 'Zm00001eb189780' => 'zma', 'Zm00001eb189790' => 'zma', 'Zm00001eb189800' => 'zma', 'Zm00001eb189810' => 'zma', 'Zm00001eb189820' => 'zma', 'Zm00001eb229720' => 'zma', 'Zm00001eb229740' => 'zma', 'Zm00001eb240810' => 'zma', 'Zm00001eb253430' => 'zma', 'Zm00001eb360860' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001810', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001810' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '362', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001810' ) ), 'genes' => array( 'A05p20170' => 'bna', 'A06p12730' => 'bna', 'A08p03150' => 'bna', 'A09p60740' => 'bna', 'Aa31LG10G3860' => 'aar', 'Aa31LG7G1260' => 'aar', 'Aa31LG8G6830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3545' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1420' => 'aag', 'Actinidia00646' => 'ach', 'Actinidia21653' => 'ach', 'Actinidia21885' => 'ach', 'Actinidia31125' => 'ach', 'Ah.08g217780' => 'amhyb', 'Ah.10g033760' => 'amhyb', 'Ah.15g094310' => 'amhyb', 'AL1G28980' => 'aly', 'AL1G58070' => 'aly', 'Aqoxy7G02764' => 'aox', 'Aqoxy7G02786' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02QZYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PFN72X' => 'arhy', 'AT1G16810' => 'ath', 'AT1G50430' => 'ath', 'ATR0626G056' => 'atr', 'ATR0691G256' => 'atr', 'Atru.chr1.2655' => 'acertr', 'AUR62001340' => 'cqu', 'AUR62001341' => 'cqu', 'AUR62020628' => 'cqu', 'AUR62025664' => 'cqu', 'AUR62025665' => 'cqu', 'AUR62038755' => 'cqu', 'BcaB02g06674' => 'bca', 'BcaB02g11146' => 'bca', 'BcaB04g17250' => 'bca', 'BcaC01g01230' => 'bca', 'BcaC05g25537' => 'bca', 'BcaC05g27431' => 'bca', 'BcaC05g27432' => 'bca', 'BcaC07g41382' => 'bca', 'BcaC07g41457' => 'bca', 'BolC3t21280H' => 'bol', 'BolC5t30218H' => 'bol', 'BolC5t32118H' => 'bol', 'BolC8t51975H' => 'bol', 'BraA05t20926Z' => 'bra', 'BraA06t24433Z' => 'bra', 'BraA08t32347Z' => 'bra', 'BraA09t41447Z' => 'bra', 'C03p89630' => 'bna', 'C05p15030' => 'bna', 'C05p33850' => 'bna', 'C08p44320' => 'bna', 'CAN.G1364.5' => 'can', 'CAN.G1726.4' => 'can', 'CAN.G226.21' => 'can', 'CAN.G484.40' => 'can', 'CANSAT01G0013' => 'cansat', 'CANSAT21G0287' => 'cansat', 'CANSAT21G1552' => 'cansat', 'CANSAT78G1543' => 'cansat', 'CARHR017280' => 'chi', 'CARHR040440' => 'chi', 'Carub.0001s1654' => 'cru', 'Carub.0001s3950' => 'cru', 'Ca_15678_v3' => 'car', 'Ca_20967_v3' => 'car', 'Ca_20968_v3' => 'car', 'CBR_g28897' => 'cbr', 'Cc04_g00170' => 'ccan', 'Cc04_g00180' => 'ccan', 'CDE02G1888' => 'cde', 'CDE02G3623' => 'cde', 'CDE06G0171' => 'cde', 'Cfa002155' => 'cfa', 'Cfa002156' => 'cfa', 'Ciclev10031631m.g' => 'ccl', 'Ciclev10033044m.g' => 'ccl', 'CiPaw.01G091100' => 'cil', 'CiPaw.01G091300' => 'cil', 'CiPaw.01G091800' => 'cil', 'CiPaw.07G214500' => 'cil', 'ClCG05G017450' => 'cla', 'ClCG07G014650' => 'cla', 'ClCG09G001620' => 'cla', 'COL.COLO4_18611' => 'col', 'COL.COLO4_30375' => 'col', 'COL.COLO4_31159' => 'col', 'COL.COLO4_31163' => 'col', 'COL.COLO4_31164' => 'col', 'COL.COLO4_31578' => 'col', 'Cpa.g.sc155.14' => 'cpa', 'Cpa.g.sc155.15' => 'cpa', 'Cpa.g.sc244.9' => 'cpa', 'Cre02.g076800' => 'cre', 'Cre16.g686900' => 'cre', 'CsaV3_3G030510' => 'csa', 'CsaV3_3G046950' => 'csa', 'CsaV3_7G033720' => 'csa', 'CSS0008124' => 'camsi', 'CSS0020822' => 'camsi', 'CSS0035377' => 'camsi', 'DCAR_001417' => 'dca', 'DCAR_014051' => 'dca', 'Dinv20338' => 'din', 'Dinv37779' => 'din', 'Dinv37780' => 'din', 'Duzib168G0090' => 'dzi', 'Duzib192G0783' => 'dzi', 'Duzib235G1221' => 'dzi', 'ECA234G3188' => 'eca', 'ECA246G3918' => 'eca', 'EL10Ac2g03718' => 'bvu', 'EL10Ac7g18157' => 'bvu', 'EL10Ac7g18159' => 'bvu', 'Eucgr.C02104' => 'egr', 'Eucgr.F04028' => 'egr', 'Eucgr.F04029' => 'egr', 'FAN02G1520' => 'fan', 'FAN02G3504' => 'fan', 'FAN05G3232' => 'fan', 'FAN05G4051' => 'fan', 'FAN09G1684' => 'fan', 'FAN09G1915' => 'fan', 'FAN14G2000' => 'fan', 'FAN14G2951' => 'fan', 'FAN15G3686' => 'fan', 'FAN20G1539' => 'fan', 'FAN24G2833' => 'fan', 'FvH4_2g30690' => 'fve', 'FvH4_6g37010' => 'fve', 'FvH4_6g37020' => 'fve', 'Glyma.07G002500' => 'gma', 'Glyma.08G224200' => 'gma', 'Glyma.08G224300' => 'gma', 'Gohir.A05G114700' => 'ghi', 'Gohir.A06G106800' => 'ghi', 'Gohir.A10G002300' => 'ghi', 'Gohir.D05G115100' => 'ghi', 'Gohir.D06G109000' => 'ghi', 'Gohir.D10G002300' => 'ghi', 'Gorai.009G119200' => 'gra', 'Gorai.010G123800' => 'gra', 'Gorai.011G002700' => 'gra', 'GSVIVG01029543001' => 'vvi', 'GSVIVG01029544001' => 'vvi', 'HanXRQChr08g0213091' => 'han', 'HanXRQChr10g0311191' => 'han', 'HanXRQChr12g0359701' => 'han', 'HanXRQChr17g0540351' => 'han', 'Haze_16252' => 'cav', 'Haze_16256' => 'cav', 'Hma1.2p1_0517F.1_g170790' => 'hma', 'Hma1.2p1_0517F.1_g170800' => 'hma', 'Hma1.2p1_0517F.1_g170810' => 'hma', 'Hma1.2p1_1111F.1_g258420' => 'hma', 'Hma1.2p1_3200F.1_g333903' => 'hma', 'Hma1.2p1_3612F.1_g337040' => 'hma', 'HPP92_015317' => 'vpl', 'HPP92_017118' => 'vpl', 'HPP92_017119' => 'vpl', 'HPP92_017124' => 'vpl', 'Hund03278' => 'sun', 'Hund05674' => 'sun', 'Hund05675' => 'sun', 'Lalb_Chr01g0011711' => 'lal', 'Lalb_Chr01g0011721' => 'lal', 'Lj3g0003412' => 'lja', 'Lj3g0003975' => 'lja', 'Lj3g0014374' => 'lja', 'Lj4A856T32' => 'lonja', 'Lsat_1_v5_gn_3_32561' => 'lsa', 'Lsat_1_v5_gn_5_137241' => 'lsa', 'Manes.14G008000' => 'mes', 'Manes.14G008100' => 'mes', 'Manes.16G136700' => 'mes', 'Mapoly0014s0045' => 'mpo', 'Mapoly0015s0079' => 'mpo', 'Mapoly0041s0083' => 'mpo', 'MBI13_g01741_MAGBIO' => 'mbi', 'MBI18_g21785_MAGBIO' => 'mbi', 'MCO04G359' => 'mco', 'MCO05G241' => 'mco', 'MCO11G332' => 'mco', 'MCO11G445' => 'mco', 'MD09G1164900' => 'mdo', 'MD09G1165100' => 'mdo', 'MD15G1110000' => 'mdo', 'MD17G1163300' => 'mdo', 'Medtr3g108730' => 'mtr', 'Medtr4g005440' => 'mtr', 'Medtr4g005450' => 'mtr', 'Medtr4g005480' => 'mtr', 'Medtr4g094510' => 'mtr', 'Medtr4g094512' => 'mtr', 'MELO3C003642.2' => 'cme', 'MELO3C024285.2' => 'cme', 'MELO3C026711.2' => 'cme', 'Migut.A00444' => 'egut', 'Migut.I01196' => 'egut', 'Migut.I01198' => 'egut', 'MSTRG.10877' => 'ama', 'MSTRG.24617' => 'ama', 'Nitab4.5_0000380g0100' => 'nta', 'Nitab4.5_0000570g0230' => 'nta', 'Nitab4.5_0001491g0070' => 'nta', 'Nitab4.5_0003259g0090' => 'nta', 'Nitab4.5_0003466g0020' => 'nta', 'Nn8g40833' => 'nnu', 'Nn8g40872' => 'nnu', 'Oeu004122.1' => 'oeu', 'Oeu035091.1' => 'oeu', 'Oeu038371.1' => 'oeu', 'Oeu038372.1' => 'oeu', 'Oeu055219.1' => 'oeu', 'Os02g0465400' => 'osa', 'Os02g0727500' => 'osa', 'Peaxi162Scf00045g01524' => 'pax', 'Peaxi162Scf00098g00116' => 'pax', 'Peaxi162Scf00700g00150' => 'pax', 'PGR031G1504' => 'pgr', 'PGR102G2479' => 'pgr', 'PGSC0003DMG400004633' => 'stu', 'PGSC0003DMG400005931' => 'stu', 'PGSC0003DMG400014722' => 'stu', 'Phvul.009G100233' => 'pvu', 'Phvul.010G163700' => 'pvu', 'Phvul.010G163800' => 'pvu', 'Potri.005G174400' => 'ptr', 'Potri.008G005200' => 'ptr', 'Potri.010G253200' => 'ptr', 'Potri.010G253301' => 'ptr', 'Potri.010G253400' => 'ptr', 'Pp3c10_8030' => 'ppa', 'Pp3c16_25140' => 'ppa', 'Pp3c24_10460' => 'ppa', 'PRCOL_00001616' => 'pco', 'PRCOL_00002858' => 'pco', 'PRCOL_00003237' => 'pco', 'Prupe.1G462200' => 'ppe', 'Prupe.3G022300' => 'ppe', 'Prupe.3G022600' => 'ppe', 'Psat0s401g0040' => 'psa', 'Psat6g190360' => 'psa', 'Psat7g264280' => 'psa', 'PSO063G6016' => 'pso', 'PSO063G6510' => 'pso', 'PSO144G0068' => 'pso', 'PSO170G1341' => 'pso', 'PSO170G2381' => 'pso', 'QL03p005885' => 'qlo', 'QL03p006486' => 'qlo', 'QL05p084468' => 'qlo', 'QL05p084482' => 'qlo', 'QL05p084549' => 'qlo', 'QL05p084562' => 'qlo', 'QL05p084856' => 'qlo', 'QL05p084923' => 'qlo', 'QL05p084936' => 'qlo', 'RcHm_v2.0_Chr2g0149551' => 'rch', 'RcHm_v2.0_Chr2g0149571' => 'rch', 'RcHm_v2.0_Chr6g0312211' => 'rch', 'Rhsim03G0090500' => 'rsi', 'Rhsim08G0250000' => 'rsi', 'Rhsim12G0215300' => 'rsi', 'Rhsim12G0215400' => 'rsi', 'Sabra05G0131400' => 'sbr', 'Sabra10G0197000' => 'sbr', 'Sabra10G0197100' => 'sbr', 'SalBow6G2819' => 'sbo', 'SalBow6G5510' => 'sbo', 'Sc09g0007920' => 'sci', 'Sc15g0001050' => 'sci', 'Sc15g0001110' => 'sci', 'Sed0001452' => 'sed', 'Sed0017404' => 'sed', 'Sed0017750' => 'sed', 'SEGI_03617' => 'sgi', 'SEGI_24153' => 'sgi', 'SEGI_29786' => 'sgi', 'SEGI_37942' => 'sgi', 'SGA_v2.0_scaffold122G33266' => 'sas', 'SGA_v2.0_scaffold27G11665' => 'sas', 'SGA_v2.0_scaffold71G23990' => 'sas', 'SHI03290' => 'shi', 'SHI10896' => 'shi', 'SHI31117' => 'shi', 'SHI31118' => 'shi', 'SHI38233' => 'shi', 'SMO141G0269' => 'smo', 'SMO365G0024' => 'smo', 'Solyc01g009310.3' => 'sly', 'Solyc06g074090.3' => 'sly', 'Solyc12g099490.3' => 'sly', 'Sopen01g004810' => 'spe', 'Sopen06g030510' => 'spe', 'Sopen08g002120' => 'spe', 'Sopen12g034160' => 'spe', 'Sp1g14950' => 'spa', 'Sp1g37260' => 'spa', 'TAR383G0925' => 'tar', 'TAR383G1089' => 'tar', 'TAR626G1359' => 'tar', 'TAR626G1482' => 'tar', 'TAR633G0644' => 'tar', 'THA.LOC104803879' => 'tha', 'THA.LOC104809047' => 'tha', 'THA.LOC104812330' => 'tha', 'Thecc.06G057700' => 'tca', 'Thecc.06G057800' => 'tca', 'Thecc.09G005100' => 'tca', 'Thhalv10009062m.g' => 'esa', 'Thhalv10011498m.g' => 'esa', 'TPR.G12495' => 'tpr', 'TPR.G14495' => 'tpr', 'TPR.G38727' => 'tpr', 'TPR.G38754' => 'tpr', 'TWI12G1300' => 'twi', 'TWI18G1195' => 'twi', 'unitig_0.g1638' => 'ugi', 'unitig_32.g11009' => 'ugi', 'vmacro06801' => 'vma', 'vmacro16534' => 'vma', 'vmacro16540' => 'vma', 'vmacro17056' => 'vma', 'vmacro17966' => 'vma', 'VMungo0331G1029' => 'vmu', 'VMungo0331G1664' => 'vmu', 'Zm00001eb140150' => 'zma', 'Zm00001eb186960' => 'zma', 'Zm00001eb189570' => 'zma', 'Zm00001eb189580' => 'zma', 'Zm00001eb189590' => 'zma', 'Zm00001eb189600' => 'zma', 'Zm00001eb189610' => 'zma', 'Zm00001eb189620' => 'zma', 'Zm00001eb189630' => 'zma', 'Zm00001eb189640' => 'zma', 'Zm00001eb189650' => 'zma', 'Zm00001eb189660' => 'zma', 'Zm00001eb189670' => 'zma', 'Zm00001eb189680' => 'zma', 'Zm00001eb189690' => 'zma', 'Zm00001eb189700' => 'zma', 'Zm00001eb189710' => 'zma', 'Zm00001eb189720' => 'zma', 'Zm00001eb189730' => 'zma', 'Zm00001eb189740' => 'zma', 'Zm00001eb189750' => 'zma', 'Zm00001eb189760' => 'zma', 'Zm00001eb189780' => 'zma', 'Zm00001eb189790' => 'zma', 'Zm00001eb189800' => 'zma', 'Zm00001eb189810' => 'zma', 'Zm00001eb189820' => 'zma', 'Zm00001eb229720' => 'zma', 'Zm00001eb229740' => 'zma', 'Zm00001eb240810' => 'zma', 'Zm00001eb253430' => 'zma', 'Zm00001eb360860' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001810' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001810' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001810' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001810' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '362', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A05p20170' => 'bna', 'A06p12730' => 'bna', 'A08p03150' => 'bna', 'A09p60740' => 'bna', 'Aa31LG10G3860' => 'aar', 'Aa31LG7G1260' => 'aar', 'Aa31LG8G6830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3545' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1420' => 'aag', 'Actinidia00646' => 'ach', 'Actinidia21653' => 'ach', 'Actinidia21885' => 'ach', 'Actinidia31125' => 'ach', 'Ah.08g217780' => 'amhyb', 'Ah.10g033760' => 'amhyb', 'Ah.15g094310' => 'amhyb', 'AL1G28980' => 'aly', 'AL1G58070' => 'aly', 'Aqoxy7G02764' => 'aox', 'Aqoxy7G02786' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02QZYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PFN72X' => 'arhy', 'AT1G16810' => 'ath', 'AT1G50430' => 'ath', 'ATR0626G056' => 'atr', 'ATR0691G256' => 'atr', 'Atru.chr1.2655' => 'acertr', 'AUR62001340' => 'cqu', 'AUR62001341' => 'cqu', 'AUR62020628' => 'cqu', 'AUR62025664' => 'cqu', 'AUR62025665' => 'cqu', 'AUR62038755' => 'cqu', 'BcaB02g06674' => 'bca', 'BcaB02g11146' => 'bca', 'BcaB04g17250' => 'bca', 'BcaC01g01230' => 'bca', 'BcaC05g25537' => 'bca', 'BcaC05g27431' => 'bca', 'BcaC05g27432' => 'bca', 'BcaC07g41382' => 'bca', 'BcaC07g41457' => 'bca', 'BolC3t21280H' => 'bol', 'BolC5t30218H' => 'bol', 'BolC5t32118H' => 'bol', 'BolC8t51975H' => 'bol', 'BraA05t20926Z' => 'bra', 'BraA06t24433Z' => 'bra', 'BraA08t32347Z' => 'bra', 'BraA09t41447Z' => 'bra', 'C03p89630' => 'bna', 'C05p15030' => 'bna', 'C05p33850' => 'bna', 'C08p44320' => 'bna', 'CAN.G1364.5' => 'can', 'CAN.G1726.4' => 'can', 'CAN.G226.21' => 'can', 'CAN.G484.40' => 'can', 'CANSAT01G0013' => 'cansat', 'CANSAT21G0287' => 'cansat', 'CANSAT21G1552' => 'cansat', 'CANSAT78G1543' => 'cansat', 'CARHR017280' => 'chi', 'CARHR040440' => 'chi', 'Carub.0001s1654' => 'cru', 'Carub.0001s3950' => 'cru', 'Ca_15678_v3' => 'car', 'Ca_20967_v3' => 'car', 'Ca_20968_v3' => 'car', 'CBR_g28897' => 'cbr', 'Cc04_g00170' => 'ccan', 'Cc04_g00180' => 'ccan', 'CDE02G1888' => 'cde', 'CDE02G3623' => 'cde', 'CDE06G0171' => 'cde', 'Cfa002155' => 'cfa', 'Cfa002156' => 'cfa', 'Ciclev10031631m.g' => 'ccl', 'Ciclev10033044m.g' => 'ccl', 'CiPaw.01G091100' => 'cil', 'CiPaw.01G091300' => 'cil', 'CiPaw.01G091800' => 'cil', 'CiPaw.07G214500' => 'cil', 'ClCG05G017450' => 'cla', 'ClCG07G014650' => 'cla', 'ClCG09G001620' => 'cla', 'COL.COLO4_18611' => 'col', 'COL.COLO4_30375' => 'col', 'COL.COLO4_31159' => 'col', 'COL.COLO4_31163' => 'col', 'COL.COLO4_31164' => 'col', 'COL.COLO4_31578' => 'col', 'Cpa.g.sc155.14' => 'cpa', 'Cpa.g.sc155.15' => 'cpa', 'Cpa.g.sc244.9' => 'cpa', 'Cre02.g076800' => 'cre', 'Cre16.g686900' => 'cre', 'CsaV3_3G030510' => 'csa', 'CsaV3_3G046950' => 'csa', 'CsaV3_7G033720' => 'csa', 'CSS0008124' => 'camsi', 'CSS0020822' => 'camsi', 'CSS0035377' => 'camsi', 'DCAR_001417' => 'dca', 'DCAR_014051' => 'dca', 'Dinv20338' => 'din', 'Dinv37779' => 'din', 'Dinv37780' => 'din', 'Duzib168G0090' => 'dzi', 'Duzib192G0783' => 'dzi', 'Duzib235G1221' => 'dzi', 'ECA234G3188' => 'eca', 'ECA246G3918' => 'eca', 'EL10Ac2g03718' => 'bvu', 'EL10Ac7g18157' => 'bvu', 'EL10Ac7g18159' => 'bvu', 'Eucgr.C02104' => 'egr', 'Eucgr.F04028' => 'egr', 'Eucgr.F04029' => 'egr', 'FAN02G1520' => 'fan', 'FAN02G3504' => 'fan', 'FAN05G3232' => 'fan', 'FAN05G4051' => 'fan', 'FAN09G1684' => 'fan', 'FAN09G1915' => 'fan', 'FAN14G2000' => 'fan', 'FAN14G2951' => 'fan', 'FAN15G3686' => 'fan', 'FAN20G1539' => 'fan', 'FAN24G2833' => 'fan', 'FvH4_2g30690' => 'fve', 'FvH4_6g37010' => 'fve', 'FvH4_6g37020' => 'fve', 'Glyma.07G002500' => 'gma', 'Glyma.08G224200' => 'gma', 'Glyma.08G224300' => 'gma', 'Gohir.A05G114700' => 'ghi', 'Gohir.A06G106800' => 'ghi', 'Gohir.A10G002300' => 'ghi', 'Gohir.D05G115100' => 'ghi', 'Gohir.D06G109000' => 'ghi', 'Gohir.D10G002300' => 'ghi', 'Gorai.009G119200' => 'gra', 'Gorai.010G123800' => 'gra', 'Gorai.011G002700' => 'gra', 'GSVIVG01029543001' => 'vvi', 'GSVIVG01029544001' => 'vvi', 'HanXRQChr08g0213091' => 'han', 'HanXRQChr10g0311191' => 'han', 'HanXRQChr12g0359701' => 'han', 'HanXRQChr17g0540351' => 'han', 'Haze_16252' => 'cav', 'Haze_16256' => 'cav', 'Hma1.2p1_0517F.1_g170790' => 'hma', 'Hma1.2p1_0517F.1_g170800' => 'hma', 'Hma1.2p1_0517F.1_g170810' => 'hma', 'Hma1.2p1_1111F.1_g258420' => 'hma', 'Hma1.2p1_3200F.1_g333903' => 'hma', 'Hma1.2p1_3612F.1_g337040' => 'hma', 'HPP92_015317' => 'vpl', 'HPP92_017118' => 'vpl', 'HPP92_017119' => 'vpl', 'HPP92_017124' => 'vpl', 'Hund03278' => 'sun', 'Hund05674' => 'sun', 'Hund05675' => 'sun', 'Lalb_Chr01g0011711' => 'lal', 'Lalb_Chr01g0011721' => 'lal', 'Lj3g0003412' => 'lja', 'Lj3g0003975' => 'lja', 'Lj3g0014374' => 'lja', 'Lj4A856T32' => 'lonja', 'Lsat_1_v5_gn_3_32561' => 'lsa', 'Lsat_1_v5_gn_5_137241' => 'lsa', 'Manes.14G008000' => 'mes', 'Manes.14G008100' => 'mes', 'Manes.16G136700' => 'mes', 'Mapoly0014s0045' => 'mpo', 'Mapoly0015s0079' => 'mpo', 'Mapoly0041s0083' => 'mpo', 'MBI13_g01741_MAGBIO' => 'mbi', 'MBI18_g21785_MAGBIO' => 'mbi', 'MCO04G359' => 'mco', 'MCO05G241' => 'mco', 'MCO11G332' => 'mco', 'MCO11G445' => 'mco', 'MD09G1164900' => 'mdo', 'MD09G1165100' => 'mdo', 'MD15G1110000' => 'mdo', 'MD17G1163300' => 'mdo', 'Medtr3g108730' => 'mtr', 'Medtr4g005440' => 'mtr', 'Medtr4g005450' => 'mtr', 'Medtr4g005480' => 'mtr', 'Medtr4g094510' => 'mtr', 'Medtr4g094512' => 'mtr', 'MELO3C003642.2' => 'cme', 'MELO3C024285.2' => 'cme', 'MELO3C026711.2' => 'cme', 'Migut.A00444' => 'egut', 'Migut.I01196' => 'egut', 'Migut.I01198' => 'egut', 'MSTRG.10877' => 'ama', 'MSTRG.24617' => 'ama', 'Nitab4.5_0000380g0100' => 'nta', 'Nitab4.5_0000570g0230' => 'nta', 'Nitab4.5_0001491g0070' => 'nta', 'Nitab4.5_0003259g0090' => 'nta', 'Nitab4.5_0003466g0020' => 'nta', 'Nn8g40833' => 'nnu', 'Nn8g40872' => 'nnu', 'Oeu004122.1' => 'oeu', 'Oeu035091.1' => 'oeu', 'Oeu038371.1' => 'oeu', 'Oeu038372.1' => 'oeu', 'Oeu055219.1' => 'oeu', 'Os02g0465400' => 'osa', 'Os02g0727500' => 'osa', 'Peaxi162Scf00045g01524' => 'pax', 'Peaxi162Scf00098g00116' => 'pax', 'Peaxi162Scf00700g00150' => 'pax', 'PGR031G1504' => 'pgr', 'PGR102G2479' => 'pgr', 'PGSC0003DMG400004633' => 'stu', 'PGSC0003DMG400005931' => 'stu', 'PGSC0003DMG400014722' => 'stu', 'Phvul.009G100233' => 'pvu', 'Phvul.010G163700' => 'pvu', 'Phvul.010G163800' => 'pvu', 'Potri.005G174400' => 'ptr', 'Potri.008G005200' => 'ptr', 'Potri.010G253200' => 'ptr', 'Potri.010G253301' => 'ptr', 'Potri.010G253400' => 'ptr', 'Pp3c10_8030' => 'ppa', 'Pp3c16_25140' => 'ppa', 'Pp3c24_10460' => 'ppa', 'PRCOL_00001616' => 'pco', 'PRCOL_00002858' => 'pco', 'PRCOL_00003237' => 'pco', 'Prupe.1G462200' => 'ppe', 'Prupe.3G022300' => 'ppe', 'Prupe.3G022600' => 'ppe', 'Psat0s401g0040' => 'psa', 'Psat6g190360' => 'psa', 'Psat7g264280' => 'psa', 'PSO063G6016' => 'pso', 'PSO063G6510' => 'pso', 'PSO144G0068' => 'pso', 'PSO170G1341' => 'pso', 'PSO170G2381' => 'pso', 'QL03p005885' => 'qlo', 'QL03p006486' => 'qlo', 'QL05p084468' => 'qlo', 'QL05p084482' => 'qlo', 'QL05p084549' => 'qlo', 'QL05p084562' => 'qlo', 'QL05p084856' => 'qlo', 'QL05p084923' => 'qlo', 'QL05p084936' => 'qlo', 'RcHm_v2.0_Chr2g0149551' => 'rch', 'RcHm_v2.0_Chr2g0149571' => 'rch', 'RcHm_v2.0_Chr6g0312211' => 'rch', 'Rhsim03G0090500' => 'rsi', 'Rhsim08G0250000' => 'rsi', 'Rhsim12G0215300' => 'rsi', 'Rhsim12G0215400' => 'rsi', 'Sabra05G0131400' => 'sbr', 'Sabra10G0197000' => 'sbr', 'Sabra10G0197100' => 'sbr', 'SalBow6G2819' => 'sbo', 'SalBow6G5510' => 'sbo', 'Sc09g0007920' => 'sci', 'Sc15g0001050' => 'sci', 'Sc15g0001110' => 'sci', 'Sed0001452' => 'sed', 'Sed0017404' => 'sed', 'Sed0017750' => 'sed', 'SEGI_03617' => 'sgi', 'SEGI_24153' => 'sgi', 'SEGI_29786' => 'sgi', 'SEGI_37942' => 'sgi', 'SGA_v2.0_scaffold122G33266' => 'sas', 'SGA_v2.0_scaffold27G11665' => 'sas', 'SGA_v2.0_scaffold71G23990' => 'sas', 'SHI03290' => 'shi', 'SHI10896' => 'shi', 'SHI31117' => 'shi', 'SHI31118' => 'shi', 'SHI38233' => 'shi', 'SMO141G0269' => 'smo', 'SMO365G0024' => 'smo', 'Solyc01g009310.3' => 'sly', 'Solyc06g074090.3' => 'sly', 'Solyc12g099490.3' => 'sly', 'Sopen01g004810' => 'spe', 'Sopen06g030510' => 'spe', 'Sopen08g002120' => 'spe', 'Sopen12g034160' => 'spe', 'Sp1g14950' => 'spa', 'Sp1g37260' => 'spa', 'TAR383G0925' => 'tar', 'TAR383G1089' => 'tar', 'TAR626G1359' => 'tar', 'TAR626G1482' => 'tar', 'TAR633G0644' => 'tar', 'THA.LOC104803879' => 'tha', 'THA.LOC104809047' => 'tha', 'THA.LOC104812330' => 'tha', 'Thecc.06G057700' => 'tca', 'Thecc.06G057800' => 'tca', 'Thecc.09G005100' => 'tca', 'Thhalv10009062m.g' => 'esa', 'Thhalv10011498m.g' => 'esa', 'TPR.G12495' => 'tpr', 'TPR.G14495' => 'tpr', 'TPR.G38727' => 'tpr', 'TPR.G38754' => 'tpr', 'TWI12G1300' => 'twi', 'TWI18G1195' => 'twi', 'unitig_0.g1638' => 'ugi', 'unitig_32.g11009' => 'ugi', 'vmacro06801' => 'vma', 'vmacro16534' => 'vma', 'vmacro16540' => 'vma', 'vmacro17056' => 'vma', 'vmacro17966' => 'vma', 'VMungo0331G1029' => 'vmu', 'VMungo0331G1664' => 'vmu', 'Zm00001eb140150' => 'zma', 'Zm00001eb186960' => 'zma', 'Zm00001eb189570' => 'zma', 'Zm00001eb189580' => 'zma', 'Zm00001eb189590' => 'zma', 'Zm00001eb189600' => 'zma', 'Zm00001eb189610' => 'zma', 'Zm00001eb189620' => 'zma', 'Zm00001eb189630' => 'zma', 'Zm00001eb189640' => 'zma', 'Zm00001eb189650' => 'zma', 'Zm00001eb189660' => 'zma', 'Zm00001eb189670' => 'zma', 'Zm00001eb189680' => 'zma', 'Zm00001eb189690' => 'zma', 'Zm00001eb189700' => 'zma', 'Zm00001eb189710' => 'zma', 'Zm00001eb189720' => 'zma', 'Zm00001eb189730' => 'zma', 'Zm00001eb189740' => 'zma', 'Zm00001eb189750' => 'zma', 'Zm00001eb189760' => 'zma', 'Zm00001eb189780' => 'zma', 'Zm00001eb189790' => 'zma', 'Zm00001eb189800' => 'zma', 'Zm00001eb189810' => 'zma', 'Zm00001eb189820' => 'zma', 'Zm00001eb229720' => 'zma', 'Zm00001eb229740' => 'zma', 'Zm00001eb240810' => 'zma', 'Zm00001eb253430' => 'zma', 'Zm00001eb360860' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001810', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001810' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '362', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001810' ) ), 'genes' => array( 'A05p20170' => 'bna', 'A06p12730' => 'bna', 'A08p03150' => 'bna', 'A09p60740' => 'bna', 'Aa31LG10G3860' => 'aar', 'Aa31LG7G1260' => 'aar', 'Aa31LG8G6830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3545' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1420' => 'aag', 'Actinidia00646' => 'ach', 'Actinidia21653' => 'ach', 'Actinidia21885' => 'ach', 'Actinidia31125' => 'ach', 'Ah.08g217780' => 'amhyb', 'Ah.10g033760' => 'amhyb', 'Ah.15g094310' => 'amhyb', 'AL1G28980' => 'aly', 'AL1G58070' => 'aly', 'Aqoxy7G02764' => 'aox', 'Aqoxy7G02786' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02QZYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PFN72X' => 'arhy', 'AT1G16810' => 'ath', 'AT1G50430' => 'ath', 'ATR0626G056' => 'atr', 'ATR0691G256' => 'atr', 'Atru.chr1.2655' => 'acertr', 'AUR62001340' => 'cqu', 'AUR62001341' => 'cqu', 'AUR62020628' => 'cqu', 'AUR62025664' => 'cqu', 'AUR62025665' => 'cqu', 'AUR62038755' => 'cqu', 'BcaB02g06674' => 'bca', 'BcaB02g11146' => 'bca', 'BcaB04g17250' => 'bca', 'BcaC01g01230' => 'bca', 'BcaC05g25537' => 'bca', 'BcaC05g27431' => 'bca', 'BcaC05g27432' => 'bca', 'BcaC07g41382' => 'bca', 'BcaC07g41457' => 'bca', 'BolC3t21280H' => 'bol', 'BolC5t30218H' => 'bol', 'BolC5t32118H' => 'bol', 'BolC8t51975H' => 'bol', 'BraA05t20926Z' => 'bra', 'BraA06t24433Z' => 'bra', 'BraA08t32347Z' => 'bra', 'BraA09t41447Z' => 'bra', 'C03p89630' => 'bna', 'C05p15030' => 'bna', 'C05p33850' => 'bna', 'C08p44320' => 'bna', 'CAN.G1364.5' => 'can', 'CAN.G1726.4' => 'can', 'CAN.G226.21' => 'can', 'CAN.G484.40' => 'can', 'CANSAT01G0013' => 'cansat', 'CANSAT21G0287' => 'cansat', 'CANSAT21G1552' => 'cansat', 'CANSAT78G1543' => 'cansat', 'CARHR017280' => 'chi', 'CARHR040440' => 'chi', 'Carub.0001s1654' => 'cru', 'Carub.0001s3950' => 'cru', 'Ca_15678_v3' => 'car', 'Ca_20967_v3' => 'car', 'Ca_20968_v3' => 'car', 'CBR_g28897' => 'cbr', 'Cc04_g00170' => 'ccan', 'Cc04_g00180' => 'ccan', 'CDE02G1888' => 'cde', 'CDE02G3623' => 'cde', 'CDE06G0171' => 'cde', 'Cfa002155' => 'cfa', 'Cfa002156' => 'cfa', 'Ciclev10031631m.g' => 'ccl', 'Ciclev10033044m.g' => 'ccl', 'CiPaw.01G091100' => 'cil', 'CiPaw.01G091300' => 'cil', 'CiPaw.01G091800' => 'cil', 'CiPaw.07G214500' => 'cil', 'ClCG05G017450' => 'cla', 'ClCG07G014650' => 'cla', 'ClCG09G001620' => 'cla', 'COL.COLO4_18611' => 'col', 'COL.COLO4_30375' => 'col', 'COL.COLO4_31159' => 'col', 'COL.COLO4_31163' => 'col', 'COL.COLO4_31164' => 'col', 'COL.COLO4_31578' => 'col', 'Cpa.g.sc155.14' => 'cpa', 'Cpa.g.sc155.15' => 'cpa', 'Cpa.g.sc244.9' => 'cpa', 'Cre02.g076800' => 'cre', 'Cre16.g686900' => 'cre', 'CsaV3_3G030510' => 'csa', 'CsaV3_3G046950' => 'csa', 'CsaV3_7G033720' => 'csa', 'CSS0008124' => 'camsi', 'CSS0020822' => 'camsi', 'CSS0035377' => 'camsi', 'DCAR_001417' => 'dca', 'DCAR_014051' => 'dca', 'Dinv20338' => 'din', 'Dinv37779' => 'din', 'Dinv37780' => 'din', 'Duzib168G0090' => 'dzi', 'Duzib192G0783' => 'dzi', 'Duzib235G1221' => 'dzi', 'ECA234G3188' => 'eca', 'ECA246G3918' => 'eca', 'EL10Ac2g03718' => 'bvu', 'EL10Ac7g18157' => 'bvu', 'EL10Ac7g18159' => 'bvu', 'Eucgr.C02104' => 'egr', 'Eucgr.F04028' => 'egr', 'Eucgr.F04029' => 'egr', 'FAN02G1520' => 'fan', 'FAN02G3504' => 'fan', 'FAN05G3232' => 'fan', 'FAN05G4051' => 'fan', 'FAN09G1684' => 'fan', 'FAN09G1915' => 'fan', 'FAN14G2000' => 'fan', 'FAN14G2951' => 'fan', 'FAN15G3686' => 'fan', 'FAN20G1539' => 'fan', 'FAN24G2833' => 'fan', 'FvH4_2g30690' => 'fve', 'FvH4_6g37010' => 'fve', 'FvH4_6g37020' => 'fve', 'Glyma.07G002500' => 'gma', 'Glyma.08G224200' => 'gma', 'Glyma.08G224300' => 'gma', 'Gohir.A05G114700' => 'ghi', 'Gohir.A06G106800' => 'ghi', 'Gohir.A10G002300' => 'ghi', 'Gohir.D05G115100' => 'ghi', 'Gohir.D06G109000' => 'ghi', 'Gohir.D10G002300' => 'ghi', 'Gorai.009G119200' => 'gra', 'Gorai.010G123800' => 'gra', 'Gorai.011G002700' => 'gra', 'GSVIVG01029543001' => 'vvi', 'GSVIVG01029544001' => 'vvi', 'HanXRQChr08g0213091' => 'han', 'HanXRQChr10g0311191' => 'han', 'HanXRQChr12g0359701' => 'han', 'HanXRQChr17g0540351' => 'han', 'Haze_16252' => 'cav', 'Haze_16256' => 'cav', 'Hma1.2p1_0517F.1_g170790' => 'hma', 'Hma1.2p1_0517F.1_g170800' => 'hma', 'Hma1.2p1_0517F.1_g170810' => 'hma', 'Hma1.2p1_1111F.1_g258420' => 'hma', 'Hma1.2p1_3200F.1_g333903' => 'hma', 'Hma1.2p1_3612F.1_g337040' => 'hma', 'HPP92_015317' => 'vpl', 'HPP92_017118' => 'vpl', 'HPP92_017119' => 'vpl', 'HPP92_017124' => 'vpl', 'Hund03278' => 'sun', 'Hund05674' => 'sun', 'Hund05675' => 'sun', 'Lalb_Chr01g0011711' => 'lal', 'Lalb_Chr01g0011721' => 'lal', 'Lj3g0003412' => 'lja', 'Lj3g0003975' => 'lja', 'Lj3g0014374' => 'lja', 'Lj4A856T32' => 'lonja', 'Lsat_1_v5_gn_3_32561' => 'lsa', 'Lsat_1_v5_gn_5_137241' => 'lsa', 'Manes.14G008000' => 'mes', 'Manes.14G008100' => 'mes', 'Manes.16G136700' => 'mes', 'Mapoly0014s0045' => 'mpo', 'Mapoly0015s0079' => 'mpo', 'Mapoly0041s0083' => 'mpo', 'MBI13_g01741_MAGBIO' => 'mbi', 'MBI18_g21785_MAGBIO' => 'mbi', 'MCO04G359' => 'mco', 'MCO05G241' => 'mco', 'MCO11G332' => 'mco', 'MCO11G445' => 'mco', 'MD09G1164900' => 'mdo', 'MD09G1165100' => 'mdo', 'MD15G1110000' => 'mdo', 'MD17G1163300' => 'mdo', 'Medtr3g108730' => 'mtr', 'Medtr4g005440' => 'mtr', 'Medtr4g005450' => 'mtr', 'Medtr4g005480' => 'mtr', 'Medtr4g094510' => 'mtr', 'Medtr4g094512' => 'mtr', 'MELO3C003642.2' => 'cme', 'MELO3C024285.2' => 'cme', 'MELO3C026711.2' => 'cme', 'Migut.A00444' => 'egut', 'Migut.I01196' => 'egut', 'Migut.I01198' => 'egut', 'MSTRG.10877' => 'ama', 'MSTRG.24617' => 'ama', 'Nitab4.5_0000380g0100' => 'nta', 'Nitab4.5_0000570g0230' => 'nta', 'Nitab4.5_0001491g0070' => 'nta', 'Nitab4.5_0003259g0090' => 'nta', 'Nitab4.5_0003466g0020' => 'nta', 'Nn8g40833' => 'nnu', 'Nn8g40872' => 'nnu', 'Oeu004122.1' => 'oeu', 'Oeu035091.1' => 'oeu', 'Oeu038371.1' => 'oeu', 'Oeu038372.1' => 'oeu', 'Oeu055219.1' => 'oeu', 'Os02g0465400' => 'osa', 'Os02g0727500' => 'osa', 'Peaxi162Scf00045g01524' => 'pax', 'Peaxi162Scf00098g00116' => 'pax', 'Peaxi162Scf00700g00150' => 'pax', 'PGR031G1504' => 'pgr', 'PGR102G2479' => 'pgr', 'PGSC0003DMG400004633' => 'stu', 'PGSC0003DMG400005931' => 'stu', 'PGSC0003DMG400014722' => 'stu', 'Phvul.009G100233' => 'pvu', 'Phvul.010G163700' => 'pvu', 'Phvul.010G163800' => 'pvu', 'Potri.005G174400' => 'ptr', 'Potri.008G005200' => 'ptr', 'Potri.010G253200' => 'ptr', 'Potri.010G253301' => 'ptr', 'Potri.010G253400' => 'ptr', 'Pp3c10_8030' => 'ppa', 'Pp3c16_25140' => 'ppa', 'Pp3c24_10460' => 'ppa', 'PRCOL_00001616' => 'pco', 'PRCOL_00002858' => 'pco', 'PRCOL_00003237' => 'pco', 'Prupe.1G462200' => 'ppe', 'Prupe.3G022300' => 'ppe', 'Prupe.3G022600' => 'ppe', 'Psat0s401g0040' => 'psa', 'Psat6g190360' => 'psa', 'Psat7g264280' => 'psa', 'PSO063G6016' => 'pso', 'PSO063G6510' => 'pso', 'PSO144G0068' => 'pso', 'PSO170G1341' => 'pso', 'PSO170G2381' => 'pso', 'QL03p005885' => 'qlo', 'QL03p006486' => 'qlo', 'QL05p084468' => 'qlo', 'QL05p084482' => 'qlo', 'QL05p084549' => 'qlo', 'QL05p084562' => 'qlo', 'QL05p084856' => 'qlo', 'QL05p084923' => 'qlo', 'QL05p084936' => 'qlo', 'RcHm_v2.0_Chr2g0149551' => 'rch', 'RcHm_v2.0_Chr2g0149571' => 'rch', 'RcHm_v2.0_Chr6g0312211' => 'rch', 'Rhsim03G0090500' => 'rsi', 'Rhsim08G0250000' => 'rsi', 'Rhsim12G0215300' => 'rsi', 'Rhsim12G0215400' => 'rsi', 'Sabra05G0131400' => 'sbr', 'Sabra10G0197000' => 'sbr', 'Sabra10G0197100' => 'sbr', 'SalBow6G2819' => 'sbo', 'SalBow6G5510' => 'sbo', 'Sc09g0007920' => 'sci', 'Sc15g0001050' => 'sci', 'Sc15g0001110' => 'sci', 'Sed0001452' => 'sed', 'Sed0017404' => 'sed', 'Sed0017750' => 'sed', 'SEGI_03617' => 'sgi', 'SEGI_24153' => 'sgi', 'SEGI_29786' => 'sgi', 'SEGI_37942' => 'sgi', 'SGA_v2.0_scaffold122G33266' => 'sas', 'SGA_v2.0_scaffold27G11665' => 'sas', 'SGA_v2.0_scaffold71G23990' => 'sas', 'SHI03290' => 'shi', 'SHI10896' => 'shi', 'SHI31117' => 'shi', 'SHI31118' => 'shi', 'SHI38233' => 'shi', 'SMO141G0269' => 'smo', 'SMO365G0024' => 'smo', 'Solyc01g009310.3' => 'sly', 'Solyc06g074090.3' => 'sly', 'Solyc12g099490.3' => 'sly', 'Sopen01g004810' => 'spe', 'Sopen06g030510' => 'spe', 'Sopen08g002120' => 'spe', 'Sopen12g034160' => 'spe', 'Sp1g14950' => 'spa', 'Sp1g37260' => 'spa', 'TAR383G0925' => 'tar', 'TAR383G1089' => 'tar', 'TAR626G1359' => 'tar', 'TAR626G1482' => 'tar', 'TAR633G0644' => 'tar', 'THA.LOC104803879' => 'tha', 'THA.LOC104809047' => 'tha', 'THA.LOC104812330' => 'tha', 'Thecc.06G057700' => 'tca', 'Thecc.06G057800' => 'tca', 'Thecc.09G005100' => 'tca', 'Thhalv10009062m.g' => 'esa', 'Thhalv10011498m.g' => 'esa', 'TPR.G12495' => 'tpr', 'TPR.G14495' => 'tpr', 'TPR.G38727' => 'tpr', 'TPR.G38754' => 'tpr', 'TWI12G1300' => 'twi', 'TWI18G1195' => 'twi', 'unitig_0.g1638' => 'ugi', 'unitig_32.g11009' => 'ugi', 'vmacro06801' => 'vma', 'vmacro16534' => 'vma', 'vmacro16540' => 'vma', 'vmacro17056' => 'vma', 'vmacro17966' => 'vma', 'VMungo0331G1029' => 'vmu', 'VMungo0331G1664' => 'vmu', 'Zm00001eb140150' => 'zma', 'Zm00001eb186960' => 'zma', 'Zm00001eb189570' => 'zma', 'Zm00001eb189580' => 'zma', 'Zm00001eb189590' => 'zma', 'Zm00001eb189600' => 'zma', 'Zm00001eb189610' => 'zma', 'Zm00001eb189620' => 'zma', 'Zm00001eb189630' => 'zma', 'Zm00001eb189640' => 'zma', 'Zm00001eb189650' => 'zma', 'Zm00001eb189660' => 'zma', 'Zm00001eb189670' => 'zma', 'Zm00001eb189680' => 'zma', 'Zm00001eb189690' => 'zma', 'Zm00001eb189700' => 'zma', 'Zm00001eb189710' => 'zma', 'Zm00001eb189720' => 'zma', 'Zm00001eb189730' => 'zma', 'Zm00001eb189740' => 'zma', 'Zm00001eb189750' => 'zma', 'Zm00001eb189760' => 'zma', 'Zm00001eb189780' => 'zma', 'Zm00001eb189790' => 'zma', 'Zm00001eb189800' => 'zma', 'Zm00001eb189810' => 'zma', 'Zm00001eb189820' => 'zma', 'Zm00001eb229720' => 'zma', 'Zm00001eb229740' => 'zma', 'Zm00001eb240810' => 'zma', 'Zm00001eb253430' => 'zma', 'Zm00001eb360860' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001810' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001810' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001810' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001810' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '362', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A05p20170' => 'bna', 'A06p12730' => 'bna', 'A08p03150' => 'bna', 'A09p60740' => 'bna', 'Aa31LG10G3860' => 'aar', 'Aa31LG7G1260' => 'aar', 'Aa31LG8G6830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3545' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1420' => 'aag', 'Actinidia00646' => 'ach', 'Actinidia21653' => 'ach', 'Actinidia21885' => 'ach', 'Actinidia31125' => 'ach', 'Ah.08g217780' => 'amhyb', 'Ah.10g033760' => 'amhyb', 'Ah.15g094310' => 'amhyb', 'AL1G28980' => 'aly', 'AL1G58070' => 'aly', 'Aqoxy7G02764' => 'aox', 'Aqoxy7G02786' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02QZYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PFN72X' => 'arhy', 'AT1G16810' => 'ath', 'AT1G50430' => 'ath', 'ATR0626G056' => 'atr', 'ATR0691G256' => 'atr', 'Atru.chr1.2655' => 'acertr', 'AUR62001340' => 'cqu', 'AUR62001341' => 'cqu', 'AUR62020628' => 'cqu', 'AUR62025664' => 'cqu', 'AUR62025665' => 'cqu', 'AUR62038755' => 'cqu', 'BcaB02g06674' => 'bca', 'BcaB02g11146' => 'bca', 'BcaB04g17250' => 'bca', 'BcaC01g01230' => 'bca', 'BcaC05g25537' => 'bca', 'BcaC05g27431' => 'bca', 'BcaC05g27432' => 'bca', 'BcaC07g41382' => 'bca', 'BcaC07g41457' => 'bca', 'BolC3t21280H' => 'bol', 'BolC5t30218H' => 'bol', 'BolC5t32118H' => 'bol', 'BolC8t51975H' => 'bol', 'BraA05t20926Z' => 'bra', 'BraA06t24433Z' => 'bra', 'BraA08t32347Z' => 'bra', 'BraA09t41447Z' => 'bra', 'C03p89630' => 'bna', 'C05p15030' => 'bna', 'C05p33850' => 'bna', 'C08p44320' => 'bna', 'CAN.G1364.5' => 'can', 'CAN.G1726.4' => 'can', 'CAN.G226.21' => 'can', 'CAN.G484.40' => 'can', 'CANSAT01G0013' => 'cansat', 'CANSAT21G0287' => 'cansat', 'CANSAT21G1552' => 'cansat', 'CANSAT78G1543' => 'cansat', 'CARHR017280' => 'chi', 'CARHR040440' => 'chi', 'Carub.0001s1654' => 'cru', 'Carub.0001s3950' => 'cru', 'Ca_15678_v3' => 'car', 'Ca_20967_v3' => 'car', 'Ca_20968_v3' => 'car', 'CBR_g28897' => 'cbr', 'Cc04_g00170' => 'ccan', 'Cc04_g00180' => 'ccan', 'CDE02G1888' => 'cde', 'CDE02G3623' => 'cde', 'CDE06G0171' => 'cde', 'Cfa002155' => 'cfa', 'Cfa002156' => 'cfa', 'Ciclev10031631m.g' => 'ccl', 'Ciclev10033044m.g' => 'ccl', 'CiPaw.01G091100' => 'cil', 'CiPaw.01G091300' => 'cil', 'CiPaw.01G091800' => 'cil', 'CiPaw.07G214500' => 'cil', 'ClCG05G017450' => 'cla', 'ClCG07G014650' => 'cla', 'ClCG09G001620' => 'cla', 'COL.COLO4_18611' => 'col', 'COL.COLO4_30375' => 'col', 'COL.COLO4_31159' => 'col', 'COL.COLO4_31163' => 'col', 'COL.COLO4_31164' => 'col', 'COL.COLO4_31578' => 'col', 'Cpa.g.sc155.14' => 'cpa', 'Cpa.g.sc155.15' => 'cpa', 'Cpa.g.sc244.9' => 'cpa', 'Cre02.g076800' => 'cre', 'Cre16.g686900' => 'cre', 'CsaV3_3G030510' => 'csa', 'CsaV3_3G046950' => 'csa', 'CsaV3_7G033720' => 'csa', 'CSS0008124' => 'camsi', 'CSS0020822' => 'camsi', 'CSS0035377' => 'camsi', 'DCAR_001417' => 'dca', 'DCAR_014051' => 'dca', 'Dinv20338' => 'din', 'Dinv37779' => 'din', 'Dinv37780' => 'din', 'Duzib168G0090' => 'dzi', 'Duzib192G0783' => 'dzi', 'Duzib235G1221' => 'dzi', 'ECA234G3188' => 'eca', 'ECA246G3918' => 'eca', 'EL10Ac2g03718' => 'bvu', 'EL10Ac7g18157' => 'bvu', 'EL10Ac7g18159' => 'bvu', 'Eucgr.C02104' => 'egr', 'Eucgr.F04028' => 'egr', 'Eucgr.F04029' => 'egr', 'FAN02G1520' => 'fan', 'FAN02G3504' => 'fan', 'FAN05G3232' => 'fan', 'FAN05G4051' => 'fan', 'FAN09G1684' => 'fan', 'FAN09G1915' => 'fan', 'FAN14G2000' => 'fan', 'FAN14G2951' => 'fan', 'FAN15G3686' => 'fan', 'FAN20G1539' => 'fan', 'FAN24G2833' => 'fan', 'FvH4_2g30690' => 'fve', 'FvH4_6g37010' => 'fve', 'FvH4_6g37020' => 'fve', 'Glyma.07G002500' => 'gma', 'Glyma.08G224200' => 'gma', 'Glyma.08G224300' => 'gma', 'Gohir.A05G114700' => 'ghi', 'Gohir.A06G106800' => 'ghi', 'Gohir.A10G002300' => 'ghi', 'Gohir.D05G115100' => 'ghi', 'Gohir.D06G109000' => 'ghi', 'Gohir.D10G002300' => 'ghi', 'Gorai.009G119200' => 'gra', 'Gorai.010G123800' => 'gra', 'Gorai.011G002700' => 'gra', 'GSVIVG01029543001' => 'vvi', 'GSVIVG01029544001' => 'vvi', 'HanXRQChr08g0213091' => 'han', 'HanXRQChr10g0311191' => 'han', 'HanXRQChr12g0359701' => 'han', 'HanXRQChr17g0540351' => 'han', 'Haze_16252' => 'cav', 'Haze_16256' => 'cav', 'Hma1.2p1_0517F.1_g170790' => 'hma', 'Hma1.2p1_0517F.1_g170800' => 'hma', 'Hma1.2p1_0517F.1_g170810' => 'hma', 'Hma1.2p1_1111F.1_g258420' => 'hma', 'Hma1.2p1_3200F.1_g333903' => 'hma', 'Hma1.2p1_3612F.1_g337040' => 'hma', 'HPP92_015317' => 'vpl', 'HPP92_017118' => 'vpl', 'HPP92_017119' => 'vpl', 'HPP92_017124' => 'vpl', 'Hund03278' => 'sun', 'Hund05674' => 'sun', 'Hund05675' => 'sun', 'Lalb_Chr01g0011711' => 'lal', 'Lalb_Chr01g0011721' => 'lal', 'Lj3g0003412' => 'lja', 'Lj3g0003975' => 'lja', 'Lj3g0014374' => 'lja', 'Lj4A856T32' => 'lonja', 'Lsat_1_v5_gn_3_32561' => 'lsa', 'Lsat_1_v5_gn_5_137241' => 'lsa', 'Manes.14G008000' => 'mes', 'Manes.14G008100' => 'mes', 'Manes.16G136700' => 'mes', 'Mapoly0014s0045' => 'mpo', 'Mapoly0015s0079' => 'mpo', 'Mapoly0041s0083' => 'mpo', 'MBI13_g01741_MAGBIO' => 'mbi', 'MBI18_g21785_MAGBIO' => 'mbi', 'MCO04G359' => 'mco', 'MCO05G241' => 'mco', 'MCO11G332' => 'mco', 'MCO11G445' => 'mco', 'MD09G1164900' => 'mdo', 'MD09G1165100' => 'mdo', 'MD15G1110000' => 'mdo', 'MD17G1163300' => 'mdo', 'Medtr3g108730' => 'mtr', 'Medtr4g005440' => 'mtr', 'Medtr4g005450' => 'mtr', 'Medtr4g005480' => 'mtr', 'Medtr4g094510' => 'mtr', 'Medtr4g094512' => 'mtr', 'MELO3C003642.2' => 'cme', 'MELO3C024285.2' => 'cme', 'MELO3C026711.2' => 'cme', 'Migut.A00444' => 'egut', 'Migut.I01196' => 'egut', 'Migut.I01198' => 'egut', 'MSTRG.10877' => 'ama', 'MSTRG.24617' => 'ama', 'Nitab4.5_0000380g0100' => 'nta', 'Nitab4.5_0000570g0230' => 'nta', 'Nitab4.5_0001491g0070' => 'nta', 'Nitab4.5_0003259g0090' => 'nta', 'Nitab4.5_0003466g0020' => 'nta', 'Nn8g40833' => 'nnu', 'Nn8g40872' => 'nnu', 'Oeu004122.1' => 'oeu', 'Oeu035091.1' => 'oeu', 'Oeu038371.1' => 'oeu', 'Oeu038372.1' => 'oeu', 'Oeu055219.1' => 'oeu', 'Os02g0465400' => 'osa', 'Os02g0727500' => 'osa', 'Peaxi162Scf00045g01524' => 'pax', 'Peaxi162Scf00098g00116' => 'pax', 'Peaxi162Scf00700g00150' => 'pax', 'PGR031G1504' => 'pgr', 'PGR102G2479' => 'pgr', 'PGSC0003DMG400004633' => 'stu', 'PGSC0003DMG400005931' => 'stu', 'PGSC0003DMG400014722' => 'stu', 'Phvul.009G100233' => 'pvu', 'Phvul.010G163700' => 'pvu', 'Phvul.010G163800' => 'pvu', 'Potri.005G174400' => 'ptr', 'Potri.008G005200' => 'ptr', 'Potri.010G253200' => 'ptr', 'Potri.010G253301' => 'ptr', 'Potri.010G253400' => 'ptr', 'Pp3c10_8030' => 'ppa', 'Pp3c16_25140' => 'ppa', 'Pp3c24_10460' => 'ppa', 'PRCOL_00001616' => 'pco', 'PRCOL_00002858' => 'pco', 'PRCOL_00003237' => 'pco', 'Prupe.1G462200' => 'ppe', 'Prupe.3G022300' => 'ppe', 'Prupe.3G022600' => 'ppe', 'Psat0s401g0040' => 'psa', 'Psat6g190360' => 'psa', 'Psat7g264280' => 'psa', 'PSO063G6016' => 'pso', 'PSO063G6510' => 'pso', 'PSO144G0068' => 'pso', 'PSO170G1341' => 'pso', 'PSO170G2381' => 'pso', 'QL03p005885' => 'qlo', 'QL03p006486' => 'qlo', 'QL05p084468' => 'qlo', 'QL05p084482' => 'qlo', 'QL05p084549' => 'qlo', 'QL05p084562' => 'qlo', 'QL05p084856' => 'qlo', 'QL05p084923' => 'qlo', 'QL05p084936' => 'qlo', 'RcHm_v2.0_Chr2g0149551' => 'rch', 'RcHm_v2.0_Chr2g0149571' => 'rch', 'RcHm_v2.0_Chr6g0312211' => 'rch', 'Rhsim03G0090500' => 'rsi', 'Rhsim08G0250000' => 'rsi', 'Rhsim12G0215300' => 'rsi', 'Rhsim12G0215400' => 'rsi', 'Sabra05G0131400' => 'sbr', 'Sabra10G0197000' => 'sbr', 'Sabra10G0197100' => 'sbr', 'SalBow6G2819' => 'sbo', 'SalBow6G5510' => 'sbo', 'Sc09g0007920' => 'sci', 'Sc15g0001050' => 'sci', 'Sc15g0001110' => 'sci', 'Sed0001452' => 'sed', 'Sed0017404' => 'sed', 'Sed0017750' => 'sed', 'SEGI_03617' => 'sgi', 'SEGI_24153' => 'sgi', 'SEGI_29786' => 'sgi', 'SEGI_37942' => 'sgi', 'SGA_v2.0_scaffold122G33266' => 'sas', 'SGA_v2.0_scaffold27G11665' => 'sas', 'SGA_v2.0_scaffold71G23990' => 'sas', 'SHI03290' => 'shi', 'SHI10896' => 'shi', 'SHI31117' => 'shi', 'SHI31118' => 'shi', 'SHI38233' => 'shi', 'SMO141G0269' => 'smo', 'SMO365G0024' => 'smo', 'Solyc01g009310.3' => 'sly', 'Solyc06g074090.3' => 'sly', 'Solyc12g099490.3' => 'sly', 'Sopen01g004810' => 'spe', 'Sopen06g030510' => 'spe', 'Sopen08g002120' => 'spe', 'Sopen12g034160' => 'spe', 'Sp1g14950' => 'spa', 'Sp1g37260' => 'spa', 'TAR383G0925' => 'tar', 'TAR383G1089' => 'tar', 'TAR626G1359' => 'tar', 'TAR626G1482' => 'tar', 'TAR633G0644' => 'tar', 'THA.LOC104803879' => 'tha', 'THA.LOC104809047' => 'tha', 'THA.LOC104812330' => 'tha', 'Thecc.06G057700' => 'tca', 'Thecc.06G057800' => 'tca', 'Thecc.09G005100' => 'tca', 'Thhalv10009062m.g' => 'esa', 'Thhalv10011498m.g' => 'esa', 'TPR.G12495' => 'tpr', 'TPR.G14495' => 'tpr', 'TPR.G38727' => 'tpr', 'TPR.G38754' => 'tpr', 'TWI12G1300' => 'twi', 'TWI18G1195' => 'twi', 'unitig_0.g1638' => 'ugi', 'unitig_32.g11009' => 'ugi', 'vmacro06801' => 'vma', 'vmacro16534' => 'vma', 'vmacro16540' => 'vma', 'vmacro17056' => 'vma', 'vmacro17966' => 'vma', 'VMungo0331G1029' => 'vmu', 'VMungo0331G1664' => 'vmu', 'Zm00001eb140150' => 'zma', 'Zm00001eb186960' => 'zma', 'Zm00001eb189570' => 'zma', 'Zm00001eb189580' => 'zma', 'Zm00001eb189590' => 'zma', 'Zm00001eb189600' => 'zma', 'Zm00001eb189610' => 'zma', 'Zm00001eb189620' => 'zma', 'Zm00001eb189630' => 'zma', 'Zm00001eb189640' => 'zma', 'Zm00001eb189650' => 'zma', 'Zm00001eb189660' => 'zma', 'Zm00001eb189670' => 'zma', 'Zm00001eb189680' => 'zma', 'Zm00001eb189690' => 'zma', 'Zm00001eb189700' => 'zma', 'Zm00001eb189710' => 'zma', 'Zm00001eb189720' => 'zma', 'Zm00001eb189730' => 'zma', 'Zm00001eb189740' => 'zma', 'Zm00001eb189750' => 'zma', 'Zm00001eb189760' => 'zma', 'Zm00001eb189780' => 'zma', 'Zm00001eb189790' => 'zma', 'Zm00001eb189800' => 'zma', 'Zm00001eb189810' => 'zma', 'Zm00001eb189820' => 'zma', 'Zm00001eb229720' => 'zma', 'Zm00001eb229740' => 'zma', 'Zm00001eb240810' => 'zma', 'Zm00001eb253430' => 'zma', 'Zm00001eb360860' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001810', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001810' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '362', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001810' ) ), 'genes' => array( 'A05p20170' => 'bna', 'A06p12730' => 'bna', 'A08p03150' => 'bna', 'A09p60740' => 'bna', 'Aa31LG10G3860' => 'aar', 'Aa31LG7G1260' => 'aar', 'Aa31LG8G6830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3545' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1420' => 'aag', 'Actinidia00646' => 'ach', 'Actinidia21653' => 'ach', 'Actinidia21885' => 'ach', 'Actinidia31125' => 'ach', 'Ah.08g217780' => 'amhyb', 'Ah.10g033760' => 'amhyb', 'Ah.15g094310' => 'amhyb', 'AL1G28980' => 'aly', 'AL1G58070' => 'aly', 'Aqoxy7G02764' => 'aox', 'Aqoxy7G02786' => 'aox', 'arahy.Tifrunner.gnm1.ann1.02QZYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PFN72X' => 'arhy', 'AT1G16810' => 'ath', 'AT1G50430' => 'ath', 'ATR0626G056' => 'atr', 'ATR0691G256' => 'atr', 'Atru.chr1.2655' => 'acertr', 'AUR62001340' => 'cqu', 'AUR62001341' => 'cqu', 'AUR62020628' => 'cqu', 'AUR62025664' => 'cqu', 'AUR62025665' => 'cqu', 'AUR62038755' => 'cqu', 'BcaB02g06674' => 'bca', 'BcaB02g11146' => 'bca', 'BcaB04g17250' => 'bca', 'BcaC01g01230' => 'bca', 'BcaC05g25537' => 'bca', 'BcaC05g27431' => 'bca', 'BcaC05g27432' => 'bca', 'BcaC07g41382' => 'bca', 'BcaC07g41457' => 'bca', 'BolC3t21280H' => 'bol', 'BolC5t30218H' => 'bol', 'BolC5t32118H' => 'bol', 'BolC8t51975H' => 'bol', 'BraA05t20926Z' => 'bra', 'BraA06t24433Z' => 'bra', 'BraA08t32347Z' => 'bra', 'BraA09t41447Z' => 'bra', 'C03p89630' => 'bna', 'C05p15030' => 'bna', 'C05p33850' => 'bna', 'C08p44320' => 'bna', 'CAN.G1364.5' => 'can', 'CAN.G1726.4' => 'can', 'CAN.G226.21' => 'can', 'CAN.G484.40' => 'can', 'CANSAT01G0013' => 'cansat', 'CANSAT21G0287' => 'cansat', 'CANSAT21G1552' => 'cansat', 'CANSAT78G1543' => 'cansat', 'CARHR017280' => 'chi', 'CARHR040440' => 'chi', 'Carub.0001s1654' => 'cru', 'Carub.0001s3950' => 'cru', 'Ca_15678_v3' => 'car', 'Ca_20967_v3' => 'car', 'Ca_20968_v3' => 'car', 'CBR_g28897' => 'cbr', 'Cc04_g00170' => 'ccan', 'Cc04_g00180' => 'ccan', 'CDE02G1888' => 'cde', 'CDE02G3623' => 'cde', 'CDE06G0171' => 'cde', 'Cfa002155' => 'cfa', 'Cfa002156' => 'cfa', 'Ciclev10031631m.g' => 'ccl', 'Ciclev10033044m.g' => 'ccl', 'CiPaw.01G091100' => 'cil', 'CiPaw.01G091300' => 'cil', 'CiPaw.01G091800' => 'cil', 'CiPaw.07G214500' => 'cil', 'ClCG05G017450' => 'cla', 'ClCG07G014650' => 'cla', 'ClCG09G001620' => 'cla', 'COL.COLO4_18611' => 'col', 'COL.COLO4_30375' => 'col', 'COL.COLO4_31159' => 'col', 'COL.COLO4_31163' => 'col', 'COL.COLO4_31164' => 'col', 'COL.COLO4_31578' => 'col', 'Cpa.g.sc155.14' => 'cpa', 'Cpa.g.sc155.15' => 'cpa', 'Cpa.g.sc244.9' => 'cpa', 'Cre02.g076800' => 'cre', 'Cre16.g686900' => 'cre', 'CsaV3_3G030510' => 'csa', 'CsaV3_3G046950' => 'csa', 'CsaV3_7G033720' => 'csa', 'CSS0008124' => 'camsi', 'CSS0020822' => 'camsi', 'CSS0035377' => 'camsi', 'DCAR_001417' => 'dca', 'DCAR_014051' => 'dca', 'Dinv20338' => 'din', 'Dinv37779' => 'din', 'Dinv37780' => 'din', 'Duzib168G0090' => 'dzi', 'Duzib192G0783' => 'dzi', 'Duzib235G1221' => 'dzi', 'ECA234G3188' => 'eca', 'ECA246G3918' => 'eca', 'EL10Ac2g03718' => 'bvu', 'EL10Ac7g18157' => 'bvu', 'EL10Ac7g18159' => 'bvu', 'Eucgr.C02104' => 'egr', 'Eucgr.F04028' => 'egr', 'Eucgr.F04029' => 'egr', 'FAN02G1520' => 'fan', 'FAN02G3504' => 'fan', 'FAN05G3232' => 'fan', 'FAN05G4051' => 'fan', 'FAN09G1684' => 'fan', 'FAN09G1915' => 'fan', 'FAN14G2000' => 'fan', 'FAN14G2951' => 'fan', 'FAN15G3686' => 'fan', 'FAN20G1539' => 'fan', 'FAN24G2833' => 'fan', 'FvH4_2g30690' => 'fve', 'FvH4_6g37010' => 'fve', 'FvH4_6g37020' => 'fve', 'Glyma.07G002500' => 'gma', 'Glyma.08G224200' => 'gma', 'Glyma.08G224300' => 'gma', 'Gohir.A05G114700' => 'ghi', 'Gohir.A06G106800' => 'ghi', 'Gohir.A10G002300' => 'ghi', 'Gohir.D05G115100' => 'ghi', 'Gohir.D06G109000' => 'ghi', 'Gohir.D10G002300' => 'ghi', 'Gorai.009G119200' => 'gra', 'Gorai.010G123800' => 'gra', 'Gorai.011G002700' => 'gra', 'GSVIVG01029543001' => 'vvi', 'GSVIVG01029544001' => 'vvi', 'HanXRQChr08g0213091' => 'han', 'HanXRQChr10g0311191' => 'han', 'HanXRQChr12g0359701' => 'han', 'HanXRQChr17g0540351' => 'han', 'Haze_16252' => 'cav', 'Haze_16256' => 'cav', 'Hma1.2p1_0517F.1_g170790' => 'hma', 'Hma1.2p1_0517F.1_g170800' => 'hma', 'Hma1.2p1_0517F.1_g170810' => 'hma', 'Hma1.2p1_1111F.1_g258420' => 'hma', 'Hma1.2p1_3200F.1_g333903' => 'hma', 'Hma1.2p1_3612F.1_g337040' => 'hma', 'HPP92_015317' => 'vpl', 'HPP92_017118' => 'vpl', 'HPP92_017119' => 'vpl', 'HPP92_017124' => 'vpl', 'Hund03278' => 'sun', 'Hund05674' => 'sun', 'Hund05675' => 'sun', 'Lalb_Chr01g0011711' => 'lal', 'Lalb_Chr01g0011721' => 'lal', 'Lj3g0003412' => 'lja', 'Lj3g0003975' => 'lja', 'Lj3g0014374' => 'lja', 'Lj4A856T32' => 'lonja', 'Lsat_1_v5_gn_3_32561' => 'lsa', 'Lsat_1_v5_gn_5_137241' => 'lsa', 'Manes.14G008000' => 'mes', 'Manes.14G008100' => 'mes', 'Manes.16G136700' => 'mes', 'Mapoly0014s0045' => 'mpo', 'Mapoly0015s0079' => 'mpo', 'Mapoly0041s0083' => 'mpo', 'MBI13_g01741_MAGBIO' => 'mbi', 'MBI18_g21785_MAGBIO' => 'mbi', 'MCO04G359' => 'mco', 'MCO05G241' => 'mco', 'MCO11G332' => 'mco', 'MCO11G445' => 'mco', 'MD09G1164900' => 'mdo', 'MD09G1165100' => 'mdo', 'MD15G1110000' => 'mdo', 'MD17G1163300' => 'mdo', 'Medtr3g108730' => 'mtr', 'Medtr4g005440' => 'mtr', 'Medtr4g005450' => 'mtr', 'Medtr4g005480' => 'mtr', 'Medtr4g094510' => 'mtr', 'Medtr4g094512' => 'mtr', 'MELO3C003642.2' => 'cme', 'MELO3C024285.2' => 'cme', 'MELO3C026711.2' => 'cme', 'Migut.A00444' => 'egut', 'Migut.I01196' => 'egut', 'Migut.I01198' => 'egut', 'MSTRG.10877' => 'ama', 'MSTRG.24617' => 'ama', 'Nitab4.5_0000380g0100' => 'nta', 'Nitab4.5_0000570g0230' => 'nta', 'Nitab4.5_0001491g0070' => 'nta', 'Nitab4.5_0003259g0090' => 'nta', 'Nitab4.5_0003466g0020' => 'nta', 'Nn8g40833' => 'nnu', 'Nn8g40872' => 'nnu', 'Oeu004122.1' => 'oeu', 'Oeu035091.1' => 'oeu', 'Oeu038371.1' => 'oeu', 'Oeu038372.1' => 'oeu', 'Oeu055219.1' => 'oeu', 'Os02g0465400' => 'osa', 'Os02g0727500' => 'osa', 'Peaxi162Scf00045g01524' => 'pax', 'Peaxi162Scf00098g00116' => 'pax', 'Peaxi162Scf00700g00150' => 'pax', 'PGR031G1504' => 'pgr', 'PGR102G2479' => 'pgr', 'PGSC0003DMG400004633' => 'stu', 'PGSC0003DMG400005931' => 'stu', 'PGSC0003DMG400014722' => 'stu', 'Phvul.009G100233' => 'pvu', 'Phvul.010G163700' => 'pvu', 'Phvul.010G163800' => 'pvu', 'Potri.005G174400' => 'ptr', 'Potri.008G005200' => 'ptr', 'Potri.010G253200' => 'ptr', 'Potri.010G253301' => 'ptr', 'Potri.010G253400' => 'ptr', 'Pp3c10_8030' => 'ppa', 'Pp3c16_25140' => 'ppa', 'Pp3c24_10460' => 'ppa', 'PRCOL_00001616' => 'pco', 'PRCOL_00002858' => 'pco', 'PRCOL_00003237' => 'pco', 'Prupe.1G462200' => 'ppe', 'Prupe.3G022300' => 'ppe', 'Prupe.3G022600' => 'ppe', 'Psat0s401g0040' => 'psa', 'Psat6g190360' => 'psa', 'Psat7g264280' => 'psa', 'PSO063G6016' => 'pso', 'PSO063G6510' => 'pso', 'PSO144G0068' => 'pso', 'PSO170G1341' => 'pso', 'PSO170G2381' => 'pso', 'QL03p005885' => 'qlo', 'QL03p006486' => 'qlo', 'QL05p084468' => 'qlo', 'QL05p084482' => 'qlo', 'QL05p084549' => 'qlo', 'QL05p084562' => 'qlo', 'QL05p084856' => 'qlo', 'QL05p084923' => 'qlo', 'QL05p084936' => 'qlo', 'RcHm_v2.0_Chr2g0149551' => 'rch', 'RcHm_v2.0_Chr2g0149571' => 'rch', 'RcHm_v2.0_Chr6g0312211' => 'rch', 'Rhsim03G0090500' => 'rsi', 'Rhsim08G0250000' => 'rsi', 'Rhsim12G0215300' => 'rsi', 'Rhsim12G0215400' => 'rsi', 'Sabra05G0131400' => 'sbr', 'Sabra10G0197000' => 'sbr', 'Sabra10G0197100' => 'sbr', 'SalBow6G2819' => 'sbo', 'SalBow6G5510' => 'sbo', 'Sc09g0007920' => 'sci', 'Sc15g0001050' => 'sci', 'Sc15g0001110' => 'sci', 'Sed0001452' => 'sed', 'Sed0017404' => 'sed', 'Sed0017750' => 'sed', 'SEGI_03617' => 'sgi', 'SEGI_24153' => 'sgi', 'SEGI_29786' => 'sgi', 'SEGI_37942' => 'sgi', 'SGA_v2.0_scaffold122G33266' => 'sas', 'SGA_v2.0_scaffold27G11665' => 'sas', 'SGA_v2.0_scaffold71G23990' => 'sas', 'SHI03290' => 'shi', 'SHI10896' => 'shi', 'SHI31117' => 'shi', 'SHI31118' => 'shi', 'SHI38233' => 'shi', 'SMO141G0269' => 'smo', 'SMO365G0024' => 'smo', 'Solyc01g009310.3' => 'sly', 'Solyc06g074090.3' => 'sly', 'Solyc12g099490.3' => 'sly', 'Sopen01g004810' => 'spe', 'Sopen06g030510' => 'spe', 'Sopen08g002120' => 'spe', 'Sopen12g034160' => 'spe', 'Sp1g14950' => 'spa', 'Sp1g37260' => 'spa', 'TAR383G0925' => 'tar', 'TAR383G1089' => 'tar', 'TAR626G1359' => 'tar', 'TAR626G1482' => 'tar', 'TAR633G0644' => 'tar', 'THA.LOC104803879' => 'tha', 'THA.LOC104809047' => 'tha', 'THA.LOC104812330' => 'tha', 'Thecc.06G057700' => 'tca', 'Thecc.06G057800' => 'tca', 'Thecc.09G005100' => 'tca', 'Thhalv10009062m.g' => 'esa', 'Thhalv10011498m.g' => 'esa', 'TPR.G12495' => 'tpr', 'TPR.G14495' => 'tpr', 'TPR.G38727' => 'tpr', 'TPR.G38754' => 'tpr', 'TWI12G1300' => 'twi', 'TWI18G1195' => 'twi', 'unitig_0.g1638' => 'ugi', 'unitig_32.g11009' => 'ugi', 'vmacro06801' => 'vma', 'vmacro16534' => 'vma', 'vmacro16540' => 'vma', 'vmacro17056' => 'vma', 'vmacro17966' => 'vma', 'VMungo0331G1029' => 'vmu', 'VMungo0331G1664' => 'vmu', 'Zm00001eb140150' => 'zma', 'Zm00001eb186960' => 'zma', 'Zm00001eb189570' => 'zma', 'Zm00001eb189580' => 'zma', 'Zm00001eb189590' => 'zma', 'Zm00001eb189600' => 'zma', 'Zm00001eb189610' => 'zma', 'Zm00001eb189620' => 'zma', 'Zm00001eb189630' => 'zma', 'Zm00001eb189640' => 'zma', 'Zm00001eb189650' => 'zma', 'Zm00001eb189660' => 'zma', 'Zm00001eb189670' => 'zma', 'Zm00001eb189680' => 'zma', 'Zm00001eb189690' => 'zma', 'Zm00001eb189700' => 'zma', 'Zm00001eb189710' => 'zma', 'Zm00001eb189720' => 'zma', 'Zm00001eb189730' => 'zma', 'Zm00001eb189740' => 'zma', 'Zm00001eb189750' => 'zma', 'Zm00001eb189760' => 'zma', 'Zm00001eb189780' => 'zma', 'Zm00001eb189790' => 'zma', 'Zm00001eb189800' => 'zma', 'Zm00001eb189810' => 'zma', 'Zm00001eb189820' => 'zma', 'Zm00001eb229720' => 'zma', 'Zm00001eb229740' => 'zma', 'Zm00001eb240810' => 'zma', 'Zm00001eb253430' => 'zma', 'Zm00001eb360860' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001810' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001810' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001810' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001810' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151