Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G232500 Populus trichocarpa HOM05D005033 ORTHO05D007005 3.8e-299 1030.8 538 100.0
Sabra10G0180300 Salix brachista HOM05D005033 ORTHO05D007005 2.0e-284 981.9 542 91.9
Potri.008G029100 Populus trichocarpa HOM05D005033 ORTHO05D007005 3.6e-273 944.5 538 89.2
GSVIVG01034665001 Vitis vinifera HOM05D005033 ORTHO05D007005 1.7e-243 845.9 538 76.8
Atru.chr13.2088 Acer truncatum HOM05D005033 ORTHO05D007005 6.5e-243 844.0 529 77.3
Duzib130G0002 Durio zibethinus HOM05D005033 ORTHO05D007005 1.1e-237 826.6 536 75.9
Duzib138G0857 Durio zibethinus HOM05D005033 ORTHO05D007005 9.1e-237 823.5 536 75.7
Hma1.2p1_0446F.1_g154670 Hydrangea macrophylla HOM05D005033 ORTHO05D007005 2.0e-236 822.4 536 77.4
Gohir.D07G190300 Gossypium hirsutum HOM05D005033 ORTHO05D007005 2.7e-236 822.0 536 75.2
Eucgr.J01030 Eucalyptus grandis HOM05D005033 ORTHO05D007005 3.5e-236 821.6 536 75.6
Gorai.001G212400 Gossypium raimondii HOM05D005033 ORTHO05D007005 7.7e-236 820.5 535 77.0
Thecc.01G170700 Theobroma cacao HOM05D005033 ORTHO05D007005 1.0e-235 820.1 537 78.6
Manes.04G062300 Manihot esculenta HOM05D005033 ORTHO05D007005 5.0e-235 817.8 538 78.3
Gohir.A07G183600 Gossypium hirsutum HOM05D005033 ORTHO05D007005 1.6e-233 812.8 535 76.4
Ciclev10003719m.g Citrus clementina HOM05D005033 ORTHO05D007005 2.8e-233 812.0 538 75.1
ClCG09G006560 Citrullus lanatus HOM05D005033 ORTHO05D007005 4.7e-233 811.2 532 74.1
CsaV3_2G032850 Cucumis sativus L. HOM05D005033 ORTHO05D007005 1.5e-231 806.2 528 73.7
VMungo0720G2563 Vigna mungo HOM05D005033 ORTHO05D007005 1.3e-230 803.1 538 72.9
MELO3C019859.2 Cucumis melo HOM05D005033 ORTHO05D007005 2.8e-230 802.0 528 73.7
Peaxi162Scf00450g00616 Petunia axillaris HOM05D005033 ORTHO05D007005 3.7e-230 801.6 514 76.5
PGR083G2464 Punica granatum HOM05D005033 ORTHO05D007005 3.5e-228 795.0 517 75.2
Nitab4.5_0004816g0020 Nicotiana tabacum HOM05D005033 ORTHO05D007005 1.0e-227 793.5 531 74.6
Solyc05g008190.3 Solanum lycopersicum HOM05D005033 ORTHO05D007005 1.3e-227 793.1 530 73.2
Glyma.20G190200 Glycine max HOM05D005033 ORTHO05D007005 2.3e-227 792.3 538 72.3
CAN.G1334.3 Capsicum annuum HOM05D005033 ORTHO05D007005 5.0e-227 791.2 538 72.3
Sopen05g004030 Solanum pennellii HOM05D005033 ORTHO05D007005 5.0e-227 791.2 530 73.2
Glyma.10G200300 Glycine max HOM05D005033 ORTHO05D007005 6.6e-227 790.8 538 71.7
CANSAT11G2161 Cannabis sativa HOM05D005033 ORTHO05D007005 5.6e-226 787.7 539 74.0
Actinidia22298 Actinidia chinensis HOM05D005033 ORTHO05D007005 9.5e-226 786.9 536 72.0
PGSC0003DMG400030544 Solanum tuberosum HOM05D005033 ORTHO05D007005 2.3e-224 782.3 514 74.5
Cc02_g10440 Coffea canephora HOM05D005033 ORTHO05D007005 4.0e-224 781.6 514 74.1
Lj5g0024582 Lotus japonicus HOM05D005033 ORTHO05D007005 4.0e-224 781.6 531 71.0
MD07G1075700 Malus domestica HOM05D005033 ORTHO05D007005 6.8e-224 780.8 541 72.3
Phvul.007G144800 Phaseolus vulgaris HOM05D005033 ORTHO05D007005 4.4e-223 778.1 538 70.1
Prupe.2G096600 Prunus persica HOM05D005033 ORTHO05D007005 7.5e-223 777.3 541 72.5
TWI34G0149 Tripterygium wilfordii HOM05D005033 ORTHO05D007005 7.5e-223 777.3 517 74.7
TAR633G0665 Trochodendron aralioides HOM05D005033 ORTHO05D007005 4.9e-222 774.6 536 71.3
Ca_10465_v3 Cicer arietinum L. HOM05D005033 ORTHO05D007005 5.4e-221 771.2 524 71.6
Sed0023623 Sechium edule HOM05D005033 ORTHO05D007005 5.4e-221 771.2 537 73.0
Lalb_Chr21g0313111 Lupinus albus HOM05D005033 ORTHO05D007005 1.6e-220 769.6 538 71.0
Nn8g40819 Nelumbo nucifera HOM05D005033 ORTHO05D007005 1.5e-218 763.1 535 70.3
AUR62018476 Chenopodium quinoa HOM05D005033 ORTHO05D007005 1.9e-218 762.7 535 71.2
DCAR_019312 Daucus carota HOM05D005033 ORTHO05D007005 5.6e-218 761.1 534 70.6
COL.COLO4_07176 Corchorus olitorius HOM05D005033 ORTHO05D007005 8.0e-217 757.3 590 67.5
CSS0020475 Camellia sinensis var. sinensis HOM05D005033 ORTHO05D007005 5.2e-216 754.6 538 70.8
QL05p060417 Quercus lobata HOM05D005033 ORTHO05D007005 5.2e-216 754.6 520 74.2
Hund09612 Selenicereus undatus HOM05D005033 ORTHO05D007005 2.9e-214 748.8 526 72.2
Medtr1g090877 Medicago truncatula HOM05D005033 ORTHO05D007005 4.9e-214 748.0 524 69.5
BolC1t05387H Brassica oleracea HOM05D005033 ORTHO05D007005 6.4e-214 747.7 534 70.0
Sp3g08810 Schrenkiella parvula HOM05D005033 ORTHO05D007005 6.4e-214 747.7 536 70.0
MD13G1165600 Malus domestica HOM05D005033 ORTHO05D007005 1.1e-213 746.9 544 70.2
BcaNung06294 Brassica carinata HOM05D005033 ORTHO05D007005 1.4e-213 746.5 534 69.5
C05p57510 Brassica napus HOM05D005033 ORTHO05D004473 2.4e-213 745.7 537 69.3
CARHR085050 Cardamine hirsuta HOM05D005033 ORTHO05D007005 4.1e-213 745.0 538 70.4
arahy.Tifrunner.gnm1.ann1.BLA122 Arachis hypogaea HOM05D005033 ORTHO05D007005 7.0e-213 744.2 522 70.5
Aqoxy7G00894 Aquilegia oxysepala HOM05D005033 ORTHO05D007005 1.2e-212 743.4 540 68.5
Sc09g0005810 Simmondsia chinensis HOM05D005033 ORTHO05D007005 1.2e-212 743.4 529 69.0
MSTRG.405 Avicennia marina HOM05D005033 ORTHO05D007005 3.5e-212 741.9 521 69.9
BcaB04g21233 Brassica carinata HOM05D005033 ORTHO05D007005 3.5e-212 741.9 534 69.7
BraA05t22654Z Brassica rapa HOM05D005033 ORTHO05D007005 7.8e-212 740.7 534 69.3
BolC5t34408H Brassica oleracea HOM05D005033 ORTHO05D004473 3.0e-211 738.8 530 69.4
Sed0004918 Sechium edule HOM05D005033 ORTHO05D007005 3.9e-211 738.4 532 70.5
BcaNung04933 Brassica carinata HOM05D005033 ORTHO05D007005 6.6e-211 737.6 524 69.8
A01p41690 Brassica napus HOM05D005033 ORTHO05D004473 6.6e-211 737.6 538 69.1
Aqoxy6G00730 Aquilegia oxysepala HOM05D005033 ORTHO05D007005 1.1e-210 736.9 518 70.3
EL10Ac3g05920 Beta vulgaris HOM05D005033 ORTHO05D007005 1.1e-210 736.9 514 70.0
THA.LOC104826968 Tarenaya hassleriana HOM05D005033 ORTHO05D007005 1.9e-210 736.1 450 78.0
Lj4A548T13 Lonicera japonica HOM05D005033 ORTHO05D007005 5.6e-210 734.6 522 69.3
Psat6g174240 Pisum sativum HOM05D005033 ORTHO05D007005 5.6e-210 734.6 524 68.1
A05p38630 Brassica napus HOM05D005033 ORTHO05D004473 2.1e-209 732.6 537 68.5
CiPaw.12G008100 Carya illinoinensis HOM05D005033 ORTHO05D007005 8.9e-208 727.2 520 69.0
AL3G21930 Arabidopsis lyrata HOM05D005033 ORTHO05D007005 4.4e-207 724.9 536 68.3
BraA01t04244Z Brassica rapa HOM05D005033 ORTHO05D007005 9.9e-207 723.8 491 72.3
arahy.Tifrunner.gnm1.ann1.FAT33H Arachis hypogaea HOM05D005033 ORTHO05D007005 6.4e-206 721.1 575 64.2
AT3G10530 Arabidopsis thaliana HOM05D005033 ORTHO05D007005 1.1e-205 720.3 536 68.1
ECA236G1450 Erigeron canadensis HOM05D005033 ORTHO05D007005 1.1e-205 720.3 517 68.3
Nitab4.5_0006512g0050 Nicotiana tabacum HOM05D005033 ORTHO05D007005 1.4e-205 719.9 532 69.4
Migut.F01668 Erythranthe guttata HOM05D005033 ORTHO05D007005 7.1e-205 717.6 537 67.4
Lj4A576G37 Lonicera japonica HOM05D005033 ORTHO05D007005 1.2e-204 716.8 522 68.6
Carub.0003s0977 Capsella rubella HOM05D005033 ORTHO05D007005 1.6e-204 716.5 536 67.2
RcHm_v2.0_Chr1g0336741 Rosa chinensis HOM05D005033 ORTHO05D007005 5.1e-203 711.4 538 67.3
Ah.01g017010 Amaranthus hybridus HOM05D005033 ORTHO05D007005 2.5e-202 709.1 509 69.5
TPR.G37792 Trifolium pratense HOM05D005033 ORTHO05D007005 2.5e-202 709.1 538 67.7
Haze_05486 Corylus avellana HOM05D005033 ORTHO05D007005 4.7e-201 704.9 613 60.4
Rhsim02G0215300 Rhododendron simsii HOM05D005033 ORTHO05D007005 4.7e-201 704.9 573 64.6
FAN10G0702 Fragaria x ananassa HOM05D005033 ORTHO05D007005 1.4e-200 703.4 540 65.9
Thhalv10020478m.g Eutrema salsugineum HOM05D005033 ORTHO05D007005 6.8e-200 701.0 529 66.0
FAN03G1010 Fragaria x ananassa HOM05D005033 ORTHO05D007005 5.8e-199 698.0 540 65.6
SGA_v2.0_scaffold144G35834 Striga asiatica HOM05D005033 ORTHO05D007005 1.7e-198 696.4 537 64.6
CDE08G1035 Ceratophyllum demersum HOM05D005033 ORTHO05D007005 1.7e-195 686.4 532 64.8
CSS0041797 Camellia sinensis var. sinensis HOM05D005033 ORTHO05D007005 6.6e-195 684.5 539 66.0
HanXRQChr04g0126221 Helianthus annuus HOM05D005033 ORTHO05D007005 4.3e-194 681.8 520 64.2
Aa31LG4G2160 Aethionema arabicum HOM05D005033 ORTHO05D007005 5.6e-194 681.4 535 66.5
vmacro04570 Vaccinium macrocarpon HOM05D005033 ORTHO05D007005 1.3e-193 680.2 584 62.3
FvH4_7g06900 Fragaria vesca HOM05D005033 ORTHO05D007005 1.6e-193 679.9 540 64.1
unitig_899.g15062 Utricularia gibba HOM05D005033 ORTHO05D007005 1.5e-191 673.3 533 63.6
HPP92_022999 Vanilla planifolia HOM05D005033 ORTHO05D007005 3.8e-190 668.7 519 63.0
SHI01926 Sapria himalayana HOM05D005033 ORTHO05D007005 2.4e-189 666.0 579 60.3
Dinv31275 Davidia involucrata HOM05D005033 ORTHO05D007005 5.1e-187 658.3 451 72.5
PSO063G4428 Papaver somniferum HOM05D005033 ORTHO05D007005 7.3e-186 654.4 508 64.4
PSO339G5947 Papaver somniferum HOM05D005033 ORTHO05D007005 5.3e-184 648.3 506 64.8
Actinidia13190 Actinidia chinensis HOM05D005033 ORTHO05D007005 9.9e-183 644.0 434 72.4
FAN06G3772 Fragaria x ananassa HOM05D005033 ORTHO05D007005 3.8e-182 642.1 540 62.0
Lsat_1_v5_gn_5_142541 Lactuca sativa HOM05D005033 ORTHO05D007005 1.9e-181 639.8 497 66.2
Oeu027297.1 Olea europaea HOM05D005033 ORTHO05D007005 4.6e-180 635.2 566 59.0
FAN01G1898 Fragaria x ananassa HOM05D005033 ORTHO05D007005 5.6e-178 628.2 528 61.9
Zm00001eb272000 Zea mays HOM05D005033 ORTHO05D007005 4.8e-177 625.2 509 61.7
CSS0012290 Camellia sinensis var. sinensis HOM05D005033 ORTHO05D007005 4.0e-176 622.1 512 66.6
ATR0598G298 Amborella trichopoda HOM05D005033 ORTHO05D007005 9.0e-176 620.9 513 60.8
Os01g0183100 Oryza sativa ssp. japonica HOM05D005033 ORTHO05D007005 3.9e-171 605.5 519 61.3
Nitab4.5_0004816g0100 Nicotiana tabacum HOM05D005033 ORTHO05D007005 1.5e-167 593.6 470 65.5
BcaC05g29453 Brassica carinata HOM05D005033 ORTHO05D004473 1.4e-165 587.0 408 71.3
Sc12g0008670 Simmondsia chinensis HOM05D005033 ORTHO05D007005 2.3e-163 579.7 409 68.7
Ciclev10003777m.g Citrus clementina HOM05D005033 ORTHO05D007005 7.7e-159 564.7 495 60.8
PSO591G0084 Papaver somniferum HOM05D005033 ORTHO05D007005 2.2e-153 546.6 431 62.4
Mapoly0082s0024 Marchantia polymorpha HOM05D005033 ORTHO05D007005 4.1e-136 489.2 507 49.9
AagrBONN_evm.TU.Sc2ySwM_362.274 Anthoceros agrestis HOM05D005033 ORTHO05D007005 2.0e-135 486.9 478 51.9
SMO367G1111 Selaginella moellendorffii HOM05D005033 ORTHO05D007005 1.8e-131 473.8 518 49.4
Pp3c1_3590 Physcomitrium patens HOM05D005033 ORTHO05D007005 1.2e-130 471.1 497 47.9
Prupe.1G365200 Prunus persica HOM05D005033 ORTHO05D007005 7.5e-130 468.4 448 57.8
Cre12.g502800 Chlamydomonas reinhardtii HOM05D005033 ORTHO05D007005 1.0e-123 448.0 522 46.2
BcaC05g29452 Brassica carinata HOM05D005033 ORTHO05D007005 1.8e-123 447.2 329 67.8
AUR62020948 Chenopodium quinoa HOM05D005033 ORTHO05D007005 2.7e-119 433.3 311 69.1
MCO04G094 Micromonas commoda HOM05D005033 ORTHO05D007005 3.6e-116 422.9 500 44.4
CBR_g12704 Chara braunii HOM05D005033 ORTHO05D007005 6.8e-115 418.7 470 46.6
PRCOL_00001195 Prasinoderma coloniale HOM05D005033 ORTHO05D007005 6.8e-107 392.1 511 42.9
Thhalv10016037m.g Eutrema salsugineum HOM05D005033 ORTHO05D007005 2.3e-102 377.1 363 56.5
Cpa.g.sc116.23 Carica papaya HOM05D005033 ORTHO05D007005 2.5e-101 373.6 519 47.0
Peaxi162Scf00159g00012 Petunia axillaris HOM05D005033 ORTHO05D007005 8.1e-100 368.6 292 63.0
Nn2g13935 Nelumbo nucifera HOM05D005033 ORTHO05D007005 8.9e-99 365.2 272 66.2
SEGI_20556 Sequoiadendron giganteum HOM05D005033 ORTHO05D007005 9.8e-98 361.7 358 50.0
Cfa025315 Carpinus fangiana HOM05D005033 ORTHO05D007005 5.4e-80 302.8 524 34.5
Actinidia36730 Actinidia chinensis HOM05D005033 ORTHO05D007005 6.3e-44 183.0 105 82.9
RcHm_v2.0_Chr1g0336811 Rosa chinensis HOM05D005033 ORTHO05D007005 1.1e-29 135.6 130 53.1
Peaxi162Scf00159g00111 Petunia axillaris HOM05D005033 ORTHO05D007005 1.0e-22 112.5 75 73.3
CAN.G1393.2 Capsicum annuum HOM05D005033 ORTHO05D005387 2.8e-20 104.4 144 44.4
RcHm_v2.0_Chr1g0336801 Rosa chinensis HOM05D005033 ORTHO05D007005 1.4e-19 102.1 65 70.8
MD05G1224900 Malus domestica HOM05D005033 ORTHO05D007005 9.4e-16 89.4 58 79.3
MD09G1267900 Malus domestica HOM05D005033 ORTHO05D007005 1.2e-15 89.0 59 79.7
MD08G1003300 Malus domestica HOM05D005033 ORTHO05D036613 8.8e-14 82.8 63 61.9
MD08G1003200 Malus domestica HOM05D005033 ORTHO05D245307 2.8e-12 77.8 70 57.1
Aa31sc66G30 Aethionema arabicum HOM05D005033 ORTHO05D007005 4.1e-11 73.9 118 38.1
arahy.Tifrunner.gnm1.ann1.5U8ZY7 Arachis hypogaea HOM05D005033 ORTHO05D083851 4.2e-08 63.9 48 68.8
Oeu011224.1 Olea europaea HOM05D003335 ORTHO05D003853 2.1e-07 61.6 244 23.0
Nn7g38170 Nelumbo nucifera HOM05D003335 ORTHO05D003853 3.6e-07 60.8 164 25.6
TAR365G0561 Trochodendron aralioides HOM05D003335 ORTHO05D003853 3.6e-07 60.8 243 23.5
arahy.Tifrunner.gnm1.ann1.R7HTY3 Arachis hypogaea HOM05D002393 ORTHO05D002845 4.7e-07 60.5 48 64.6
PSO832G0093 Papaver somniferum HOM05D003335 ORTHO05D003853 4.7e-07 60.5 244 23.8
Aqoxy2G03744 Aquilegia oxysepala HOM05D003335 ORTHO05D003853 6.1e-07 60.1 168 25.0
Zm00001eb046370 Zea mays HOM05D003335 ORTHO05D003853 8.0e-07 59.7 165 24.8
Sabra08G0131000 Salix brachista HOM05D003335 ORTHO05D003853 1.0e-06 59.3 165 24.2
Glyma.20G084500 Glycine max HOM05D003335 ORTHO05D003853 1.4e-06 58.9 244 21.3
Potri.010G066000 Populus trichocarpa HOM05D003335 ORTHO05D003853 1.4e-06 58.9 165 24.2
Zm00001eb222190 Zea mays HOM05D003335 ORTHO05D003853 1.4e-06 58.9 166 25.9
PSO764G0342 Papaver somniferum HOM05D003335 ORTHO05D003853 1.8e-06 58.5 244 23.4
Potri.008G171600 Populus trichocarpa HOM05D003335 ORTHO05D003853 1.8e-06 58.5 165 24.2
Os10g0466300 Oryza sativa ssp. japonica HOM05D003335 ORTHO05D003853 2.3e-06 58.2 165 24.8
Pp3c6_19920 Physcomitrium patens HOM05D003335 ORTHO05D003853 2.3e-06 58.2 164 23.8
Lalb_Chr19g0128501 Lupinus albus HOM05D003335 ORTHO05D003853 3.0e-06 57.8 165 21.8
CDE08G0175 Ceratophyllum demersum HOM05D003335 ORTHO05D003853 4.0e-06 57.4 164 23.2
MBI10_g35441_MAGBIO Magnolia biondii HOM05D003335 ORTHO05D003853 4.0e-06 57.4 165 23.0
Lalb_Chr01g0020321 Lupinus albus HOM05D003335 ORTHO05D003853 5.2e-06 57.0 165 21.8
Sabra10G0041200 Salix brachista HOM05D003335 ORTHO05D003853 5.2e-06 57.0 164 23.8
Carub.0001s0372 Capsella rubella HOM05D003335 ORTHO05D003853 6.8e-06 56.6 160 24.4
AL4G28990 Arabidopsis lyrata HOM05D003335 ORTHO05D003853 8.8e-06 56.2 160 23.8


User provided reference genes

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