Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G208400 Populus trichocarpa HOM05D006356 ORTHO05D007903 0.0e+00 2625.5 1325 100.0
Potri.008G052400 Populus trichocarpa HOM05D006356 ORTHO05D007903 0.0e+00 2325.4 1326 88.4
Sabra08G0037700 Salix brachista HOM05D006356 ORTHO05D007903 0.0e+00 2313.9 1326 88.2
QL08p059009 Quercus lobata HOM05D006356 ORTHO05D007903 0.0e+00 1991.9 1325 74.3
Haze_17035 Corylus avellana HOM05D006356 ORTHO05D007903 0.0e+00 1958.7 1334 72.9
Cfa001508 Carpinus fangiana HOM05D006356 ORTHO05D007903 0.0e+00 1949.5 1334 72.8
TWI38G0752 Tripterygium wilfordii HOM05D006356 ORTHO05D007903 0.0e+00 1927.5 1328 72.7
Thecc.10G046600 Theobroma cacao HOM05D006356 ORTHO05D007903 0.0e+00 1911.3 1334 72.2
Duzib106G0492 Durio zibethinus HOM05D006356 ORTHO05D007903 0.0e+00 1907.9 1332 72.0
CANSAT56G2020 Cannabis sativa HOM05D006356 ORTHO05D007903 0.0e+00 1887.8 1330 70.5
Gohir.D10G224900 Gossypium hirsutum HOM05D006356 ORTHO05D007903 0.0e+00 1887.8 1332 71.4
Gorai.011G255900 Gossypium raimondii HOM05D006356 ORTHO05D007903 0.0e+00 1884.0 1334 71.1
CSS0015977 Camellia sinensis var. sinensis HOM05D006356 ORTHO05D007903 0.0e+00 1879.0 1334 70.6
Ciclev10030528m.g Citrus clementina HOM05D006356 ORTHO05D007903 0.0e+00 1866.3 1330 71.2
Actinidia07718 Actinidia chinensis HOM05D006356 ORTHO05D007903 0.0e+00 1862.4 1338 69.5
FvH4_7g21920 Fragaria vesca HOM05D006356 ORTHO05D007903 0.0e+00 1853.2 1330 70.3
FAN03G2412 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1851.6 1330 70.2
FAN06G1346 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1851.3 1330 70.3
FAN01G2014 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1850.9 1330 70.2
Prupe.2G231100 Prunus persica HOM05D006356 ORTHO05D007903 0.0e+00 1848.2 1326 70.1
Atru.BG.253.p Acer truncatum HOM05D006356 ORTHO05D007903 0.0e+00 1841.2 1248 74.5
FAN10G4053 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1840.5 1330 70.1
RcHm_v2.0_Chr1g0366221 Rosa chinensis HOM05D006356 ORTHO05D007903 0.0e+00 1838.2 1328 69.6
TAR369G0783 Trochodendron aralioides HOM05D006356 ORTHO05D007903 0.0e+00 1834.7 1334 69.0
LjContig00357g0007551 Lotus japonicus HOM05D006356 ORTHO05D007903 0.0e+00 1828.1 1323 68.3
MD07G1193500 Malus domestica HOM05D006356 ORTHO05D007903 0.0e+00 1827.4 1329 68.8
Rhsim09G0107200 Rhododendron simsii HOM05D006356 ORTHO05D007903 0.0e+00 1823.9 1332 68.7
PGR044G1537 Punica granatum HOM05D006356 ORTHO05D007903 0.0e+00 1806.6 1329 67.5
Gohir.A10G215900 Gossypium hirsutum HOM05D006356 ORTHO05D007903 0.0e+00 1795.0 1249 72.0
Lj8C87G2 Lonicera japonica HOM05D006356 ORTHO05D007903 0.0e+00 1795.0 1328 67.6
MD01G1123800 Malus domestica HOM05D006356 ORTHO05D007903 0.0e+00 1792.3 1326 67.9
arahy.Tifrunner.gnm1.ann1.C821YF Arachis hypogaea HOM05D006356 ORTHO05D007903 0.0e+00 1783.8 1328 66.9
Lalb_Chr21g0307391 Lupinus albus HOM05D006356 ORTHO05D007903 0.0e+00 1771.1 1329 66.8
ClCG09G020060 Citrullus lanatus HOM05D006356 ORTHO05D007903 0.0e+00 1769.2 1326 66.9
FAN06G1693 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1764.2 1248 70.9
Psat2g006960 Pisum sativum HOM05D006356 ORTHO05D007903 0.0e+00 1761.9 1331 66.7
Nn2g12928 Nelumbo nucifera HOM05D006356 ORTHO05D007903 0.0e+00 1761.5 1338 65.2
Glyma.10G289800 Glycine max HOM05D006356 ORTHO05D007903 0.0e+00 1760.7 1330 66.5
Medtr1g115300 Medicago truncatula HOM05D006356 ORTHO05D007903 0.0e+00 1760.3 1328 66.6
vmacro07156 Vaccinium macrocarpon HOM05D006356 ORTHO05D007903 0.0e+00 1756.1 1278 68.5
MELO3C025450.2 Cucumis melo HOM05D006356 ORTHO05D007903 0.0e+00 1753.4 1326 66.1
Manes.07G113200 Manihot esculenta HOM05D006356 ORTHO05D007903 0.0e+00 1746.5 1100 78.5
EL10Ac2g03426 Beta vulgaris HOM05D006356 ORTHO05D007903 0.0e+00 1742.6 1337 65.4
Solyc05g054630.4 Solanum lycopersicum HOM05D006356 ORTHO05D007903 0.0e+00 1741.9 1329 66.7
Peaxi162Scf00015g01616 Petunia axillaris HOM05D006356 ORTHO05D007903 0.0e+00 1741.1 1325 66.6
AUR62040952 Chenopodium quinoa HOM05D006356 ORTHO05D007903 0.0e+00 1740.7 1332 65.4
PGSC0003DMG400023520 Solanum tuberosum HOM05D006356 ORTHO05D007903 0.0e+00 1739.5 1325 66.7
CAN.G1013.4 Capsicum annuum HOM05D006356 ORTHO05D007903 0.0e+00 1737.2 1325 66.5
VMungo0720G2582 Vigna mungo HOM05D006356 ORTHO05D007903 0.0e+00 1732.2 1328 65.3
Nitab4.5_0006342g0010 Nicotiana tabacum HOM05D006356 ORTHO05D007903 0.0e+00 1731.8 1345 65.5
DCAR_027666 Daucus carota HOM05D006356 ORTHO05D007903 0.0e+00 1726.5 1326 65.2
TPR.G13985 Trifolium pratense HOM05D006356 ORTHO05D007903 0.0e+00 1726.1 1331 65.5
Ah.16g107390 Amaranthus hybridus HOM05D006356 ORTHO05D007903 0.0e+00 1724.9 1331 64.7
Sc20g0002610 Simmondsia chinensis HOM05D006356 ORTHO05D007903 0.0e+00 1723.8 1332 64.8
Ca_11290_v3 Cicer arietinum L. HOM05D006356 ORTHO05D007903 0.0e+00 1723.4 1282 67.2
Nitab4.5_0001831g0090 Nicotiana tabacum HOM05D006356 ORTHO05D007903 0.0e+00 1721.1 1323 66.4
Eucgr.J00045 Eucalyptus grandis HOM05D006356 ORTHO05D007903 0.0e+00 1719.9 1331 65.3
THA.LOC104799353 Tarenaya hassleriana HOM05D006356 ORTHO05D007903 0.0e+00 1715.7 1327 66.0
MBI14_g24317_MAGBIO Magnolia biondii HOM05D006356 ORTHO05D007903 0.0e+00 1713.0 1343 65.7
PSO675G9381 Papaver somniferum HOM05D006356 ORTHO05D007903 0.0e+00 1704.9 1334 64.7
Cc02_g08190 Coffea canephora HOM05D006356 ORTHO05D007903 0.0e+00 1693.3 1326 63.5
GSVIVG01016590001 Vitis vinifera HOM05D006356 ORTHO05D007903 0.0e+00 1688.7 1325 65.5
PSO541G4186 Papaver somniferum HOM05D006356 ORTHO05D007903 0.0e+00 1686.8 1343 63.8
Aqoxy4G02989 Aquilegia oxysepala HOM05D006356 ORTHO05D007903 0.0e+00 1673.7 1345 63.6
Sopen05g033110 Solanum pennellii HOM05D006356 ORTHO05D007903 0.0e+00 1670.6 1249 68.0
Hund20019 Selenicereus undatus HOM05D006356 ORTHO05D007903 0.0e+00 1669.1 1268 65.9
AL6G24290 Arabidopsis lyrata HOM05D006356 ORTHO05D007903 0.0e+00 1664.8 1331 63.8
Atru.chr12.503 Acer truncatum HOM05D006356 ORTHO05D007903 0.0e+00 1663.7 1098 76.3
Thhalv10012453m.g Eutrema salsugineum HOM05D006356 ORTHO05D007903 0.0e+00 1659.4 1332 63.3
Sp6g30340 Schrenkiella parvula HOM05D006356 ORTHO05D007903 0.0e+00 1655.6 1334 63.1
Carub.0006s1184 Capsella rubella HOM05D006356 ORTHO05D007903 0.0e+00 1648.3 1334 63.7
C09p63420 Brassica napus HOM05D006356 ORTHO05D007903 0.0e+00 1647.1 1334 63.2
BolC9t59188H Brassica oleracea HOM05D006356 ORTHO05D007903 0.0e+00 1644.4 1335 62.8
AT5G13680 Arabidopsis thaliana HOM05D006356 ORTHO05D007903 0.0e+00 1642.1 1333 63.2
A10p24610 Brassica napus HOM05D006356 ORTHO05D007903 0.0e+00 1640.9 1334 62.6
BraA10t44524Z Brassica rapa HOM05D006356 ORTHO05D007903 0.0e+00 1640.9 1334 62.7
ECA233G4627 Erigeron canadensis HOM05D006356 ORTHO05D007903 0.0e+00 1627.8 1329 63.7
Migut.H00419 Erythranthe guttata HOM05D006356 ORTHO05D007903 0.0e+00 1617.4 1331 61.7
Aa31sc144G30 Aethionema arabicum HOM05D006356 ORTHO05D007903 0.0e+00 1612.0 1362 60.9
AUR62038374 Chenopodium quinoa HOM05D006356 ORTHO05D007903 0.0e+00 1598.2 1194 66.6
Lsat_1_v5_gn_8_16481 Lactuca sativa HOM05D006356 ORTHO05D007903 0.0e+00 1591.6 1332 62.2
HanXRQChr08g0220321 Helianthus annuus HOM05D006356 ORTHO05D007903 0.0e+00 1590.9 1323 61.9
SGA_v2.0_scaffold204G41568 Striga asiatica HOM05D006356 ORTHO05D007903 0.0e+00 1582.0 1325 59.8
Dinv31432 Davidia involucrata HOM05D006356 ORTHO05D007903 0.0e+00 1559.3 1285 63.9
BcaC04g24267 Brassica carinata HOM05D006356 ORTHO05D007903 0.0e+00 1545.8 1332 60.3
Phvul.007G011700 Phaseolus vulgaris HOM05D006356 ORTHO05D007903 0.0e+00 1526.5 1133 66.9
CsaV3_5G026400 Cucumis sativus L. HOM05D006356 ORTHO05D007903 0.0e+00 1501.9 1112 66.9
Sed0005812 Sechium edule HOM05D006356 ORTHO05D007903 0.0e+00 1489.2 1095 68.7
Os07g0563700 Oryza sativa ssp. japonica HOM05D006356 ORTHO05D007903 0.0e+00 1482.6 1338 56.1
CARHR199760 Cardamine hirsuta HOM05D006356 ORTHO05D007903 0.0e+00 1465.7 1156 64.9
COL.COLO4_14974 Corchorus olitorius HOM05D006356 ORTHO05D007903 0.0e+00 1460.3 1328 59.4
Zm00001eb082380 Zea mays HOM05D006356 ORTHO05D007903 0.0e+00 1453.7 1322 55.0
Oeu016021.3 Olea europaea HOM05D006356 ORTHO05D007903 0.0e+00 1425.6 1560 50.1
HPP92_012583 Vanilla planifolia HOM05D006356 ORTHO05D007903 0.0e+00 1380.5 1327 54.6
ATR0559G370 Amborella trichopoda HOM05D006356 ORTHO05D007903 0.0e+00 1372.8 1351 53.3
CiPaw.01G284000 Carya illinoinensis HOM05D006356 ORTHO05D007903 0.0e+00 1335.9 947 69.5
Cpa.g.sc1.373 Carica papaya HOM05D006356 ORTHO05D007903 0.0e+00 1257.7 908 69.7
Hma1.2p1_0533F.1_g173660 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 0.0e+00 1231.1 865 71.2
CDE04G3644 Ceratophyllum demersum HOM05D006356 ORTHO05D007903 0.0e+00 1221.8 1344 51.6
SEGI_26197 Sequoiadendron giganteum HOM05D006356 ORTHO05D007903 0.0e+00 1160.2 1255 49.2
Hma1.2p1_0533F.1_g173650 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 0.0e+00 1126.3 756 74.1
Mapoly0015s0194 Marchantia polymorpha HOM05D006356 ORTHO05D007903 2.2e-260 903.3 1370 39.6
SMO352G0087 Selaginella moellendorffii HOM05D006356 ORTHO05D007903 1.0e-244 851.3 1335 39.1
AagrBONN_evm.TU.Sc2ySwM_362.1673 Anthoceros agrestis HOM05D006356 ORTHO05D007903 4.1e-238 829.3 1154 41.4
unitig_736.g22670 Utricularia gibba HOM05D006356 ORTHO05D007903 6.1e-234 815.5 854 48.8
Pp3c8_3890 Physcomitrium patens HOM05D006356 ORTHO05D007903 1.3e-228 797.7 1153 41.2
SEGI_10512 Sequoiadendron giganteum HOM05D006356 ORTHO05D007903 4.4e-224 782.7 806 52.5
CBR_g230 Chara braunii HOM05D006356 ORTHO05D007903 8.2e-170 602.4 1538 30.9
Cpa.g.sc1.372 Carica papaya HOM05D006356 ORTHO05D007903 4.1e-153 547.0 358 76.3
unitig_736.g22669 Utricularia gibba HOM05D006356 ORTHO05D007903 4.7e-141 506.9 460 58.0
arahy.Tifrunner.gnm1.ann1.1A0WRJ Arachis hypogaea HOM05D006356 ORTHO05D007903 2.5e-134 484.6 378 63.2
MCO05G525 Micromonas commoda HOM05D006356 ORTHO05D007903 3.1e-92 344.7 1369 26.8
Cre08.g372500 Chlamydomonas reinhardtii HOM05D006356 ORTHO05D007903 3.4e-91 341.3 1532 25.5
Actinidia02967 Actinidia chinensis HOM05D006356 ORTHO05D007903 2.5e-86 325.1 318 55.7
Psat2g034240 Pisum sativum HOM05D006356 ORTHO05D007903 3.0e-79 301.6 302 53.6
Nn4g26017 Nelumbo nucifera HOM05D006356 ORTHO05D007903 2.5e-78 298.5 256 55.1
Hma1.2p1_0529F.1_g173120 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 3.4e-75 288.1 196 76.5
TAR225G0003 Trochodendron aralioides HOM05D002467 ORTHO05D003907 1.6e-61 242.7 1262 25.1
Hma1.2p1_0248F.1_g102020 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 5.8e-59 234.2 167 73.7
Psat0s3149g0040 Pisum sativum HOM05D006356 ORTHO05D007903 4.2e-57 228.0 204 58.3
PRCOL_00001522 Prasinoderma coloniale HOM05D006356 ORTHO05D007903 3.9e-55 221.5 1364 25.3
Psat0s3149g0080 Pisum sativum HOM05D006356 ORTHO05D007903 5.1e-55 221.1 224 53.6
Psat6g224200 Pisum sativum HOM05D006356 ORTHO05D007903 6.5e-42 177.6 129 72.1
Lj5g0016728 Lotus japonicus HOM05D006356 ORTHO05D007903 4.6e-40 171.4 289 41.9
Psat0s4636g0040 Pisum sativum HOM05D006356 ORTHO05D007903 1.8e-39 169.5 125 71.2
AUR62038375 Chenopodium quinoa HOM05D006356 ORTHO05D007903 9.4e-33 147.1 139 55.4


User provided reference genes

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