Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G183799 Populus trichocarpa HOM05D000725 ORTHO05D004053 8.5e-168 593.6 297 100.0
Sabra10G0141000 Salix brachista HOM05D000725 ORTHO05D004053 2.0e-124 449.5 271 85.6
Sabra08G0054700 Salix brachista HOM05D000725 ORTHO05D004053 2.7e-113 412.5 289 74.7
Potri.008G073500 Populus trichocarpa HOM05D000725 ORTHO05D004053 2.9e-107 392.5 267 76.4
Manes.10G007800 Manihot esculenta HOM05D000725 ORTHO05D004053 3.1e-69 266.2 285 53.0
Duzib106G0872 Durio zibethinus HOM05D000725 ORTHO05D004053 1.1e-63 247.7 276 52.9
Duzib114G0648 Durio zibethinus HOM05D000725 ORTHO05D004053 1.2e-60 237.7 273 51.3
Haze_17278 Corylus avellana HOM05D000725 ORTHO05D004053 1.4e-58 230.7 294 44.2
Haze_17287 Corylus avellana HOM05D000725 ORTHO05D004053 1.4e-58 230.7 294 44.2
Cfa001267 Carpinus fangiana HOM05D000725 ORTHO05D004053 1.0e-56 224.6 288 44.4
Thecc.10G009700 Theobroma cacao HOM05D000725 ORTHO05D004053 3.0e-56 223.0 271 49.1
QL08p063892 Quercus lobata HOM05D000725 ORTHO05D004053 8.2e-54 214.9 294 43.5
CiPaw.01G301800 Carya illinoinensis HOM05D000725 ORTHO05D004053 1.1e-53 214.5 294 44.2
Cpa.g.sc19.123 Carica papaya HOM05D000725 ORTHO05D004053 4.5e-52 209.1 292 44.2
COL.COLO4_25795 Corchorus olitorius HOM05D000725 ORTHO05D004053 5.9e-52 208.8 283 46.6
Gohir.D06G166900 Gossypium hirsutum HOM05D000725 ORTHO05D004053 1.0e-51 208.0 274 43.8
Gorai.010G194700 Gossypium raimondii HOM05D000725 ORTHO05D004053 1.3e-51 207.6 274 43.4
Gohir.A06G160900 Gossypium hirsutum HOM05D000725 ORTHO05D004053 3.8e-51 206.1 274 43.1
Ciclev10033966m.g Citrus clementina HOM05D000725 ORTHO05D004053 2.4e-45 186.8 336 37.5
ClCG07G004630 Citrullus lanatus HOM05D000725 ORTHO05D004053 9.1e-45 184.9 288 39.2
MELO3C018395.2 Cucumis melo HOM05D000725 ORTHO05D004053 9.1e-45 184.9 290 40.7
CsaV3_5G010570 Cucumis sativus L. HOM05D000725 ORTHO05D004053 5.9e-44 182.2 290 40.0
Sed0016433 Sechium edule HOM05D000725 ORTHO05D004053 1.5e-42 177.6 290 41.7
THA.LOC104811007 Tarenaya hassleriana HOM05D000725 ORTHO05D004053 1.2e-41 174.5 280 43.2
Atru.chr12.108 Acer truncatum HOM05D000725 ORTHO05D004053 8.0e-41 171.8 349 34.4
GSVIVG01032746001 Vitis vinifera HOM05D000725 ORTHO05D004053 8.8e-40 168.3 292 39.4
Hma1.2p1_1013F.1_g247700 Hydrangea macrophylla HOM05D000725 ORTHO05D004053 1.2e-39 167.9 283 39.9
Eucgr.J00168 Eucalyptus grandis HOM05D000725 ORTHO05D004053 3.4e-39 166.4 278 36.3
SHI28808 Sapria himalayana HOM05D000725 ORTHO05D004053 1.3e-38 164.5 235 40.9
Aa31LG1G14210 Aethionema arabicum HOM05D000725 ORTHO05D004053 1.7e-38 164.1 283 39.6
Prupe.2G256800 Prunus persica HOM05D000725 ORTHO05D004053 4.8e-38 162.5 285 38.9
AL6G31990 Arabidopsis lyrata HOM05D000725 ORTHO05D004053 6.3e-38 162.2 270 40.0
Sp6g24000 Schrenkiella parvula HOM05D000725 ORTHO05D004053 5.3e-37 159.1 284 37.0
Aa31LG4G13300 Aethionema arabicum HOM05D000725 ORTHO05D004053 7.0e-37 158.7 226 42.5
CARHR192380 Cardamine hirsuta HOM05D000725 ORTHO05D004053 1.2e-36 157.9 284 38.7
AT5G20420 Arabidopsis thaliana HOM05D000725 ORTHO05D004053 2.2e-35 153.7 269 37.9
Carub.0006s1880 Capsella rubella HOM05D000725 ORTHO05D004053 2.9e-35 153.3 285 36.5
A10p19550 Brassica napus HOM05D000725 ORTHO05D004053 1.1e-34 151.4 265 38.5
BraA10t44031Z Brassica rapa HOM05D000725 ORTHO05D004053 1.1e-34 151.4 265 38.5
CSS0025020 Camellia sinensis var. sinensis HOM05D000725 ORTHO05D004053 1.5e-34 151.0 292 39.0
C09p55760 Brassica napus HOM05D000725 ORTHO05D004053 3.2e-34 149.8 221 42.1
BcaB08g36500 Brassica carinata HOM05D000725 ORTHO05D004053 9.4e-34 148.3 273 37.4
Sp7g16860 Schrenkiella parvula HOM05D000725 ORTHO05D004053 1.6e-33 147.5 214 40.7
CARHR153700 Cardamine hirsuta HOM05D000725 ORTHO05D004053 3.6e-33 146.4 262 36.3
PGR044G2605 Punica granatum HOM05D000725 ORTHO05D004053 3.6e-33 146.4 299 34.8
Thhalv10012460m.g Eutrema salsugineum HOM05D000725 ORTHO05D004053 6.1e-33 145.6 216 41.7
Glyma.U027200 Glycine max HOM05D000725 ORTHO05D004053 6.1e-33 145.6 329 31.9
AL5G20900 Arabidopsis lyrata HOM05D000725 ORTHO05D004053 8.0e-33 145.2 271 36.2
Glyma.02G261800 Glycine max HOM05D000725 ORTHO05D004053 8.0e-33 145.2 329 31.9
LjContig00357g0008885 Lotus japonicus HOM05D000725 ORTHO05D004053 2.3e-32 143.7 324 31.8
Thhalv10024231m.g Eutrema salsugineum HOM05D000725 ORTHO05D004053 8.8e-32 141.7 220 40.0
BolC9t58445H Brassica oleracea HOM05D000725 ORTHO05D004053 1.2e-31 141.4 227 41.0
TWI73G1060 Tripterygium wilfordii HOM05D000725 ORTHO05D004053 1.2e-31 141.4 319 34.8
BcaC04g19431 Brassica carinata HOM05D000725 ORTHO05D004053 2.0e-31 140.6 228 42.1
Lj1A961T79 Lonicera japonica HOM05D000725 ORTHO05D004053 2.0e-31 140.6 279 33.7
A08p12990 Brassica napus HOM05D000725 ORTHO05D004053 5.7e-31 139.0 266 35.7
BolC8t48449H Brassica oleracea HOM05D000725 ORTHO05D004053 5.7e-31 139.0 267 35.6
BraA08t33283Z Brassica rapa HOM05D000725 ORTHO05D004053 5.7e-31 139.0 266 35.7
FAN03G2016 Fragaria x ananassa HOM05D000725 ORTHO05D004053 5.7e-31 139.0 292 36.0
AT3G42670 Arabidopsis thaliana HOM05D000725 ORTHO05D004053 1.3e-30 137.9 207 39.1
RcHm_v2.0_Chr1g0371111 Rosa chinensis HOM05D000725 ORTHO05D004053 2.2e-30 137.1 283 35.3
Actinidia29727 Actinidia chinensis HOM05D000725 ORTHO05D004053 2.8e-30 136.7 271 37.6
Phvul.008G220500 Phaseolus vulgaris HOM05D000725 ORTHO05D004053 4.8e-30 136.0 333 31.2
VMungo0647G1332 Vigna mungo HOM05D000725 ORTHO05D004053 6.3e-30 135.6 354 29.9
Ca_05997_v3 Cicer arietinum L. HOM05D000725 ORTHO05D004053 8.3e-30 135.2 327 33.6
Ca_05999_v3 Cicer arietinum L. HOM05D000725 ORTHO05D004053 8.3e-30 135.2 327 33.6
CANSAT56G0874 Cannabis sativa HOM05D000725 ORTHO05D004053 1.4e-29 134.4 269 35.7
Carub.0008s1899 Capsella rubella HOM05D000725 ORTHO05D004053 2.4e-29 133.7 206 41.7
Lj8C62G8 Lonicera japonica HOM05D000725 ORTHO05D004053 4.1e-29 132.9 308 34.7
FAN10G2086 Fragaria x ananassa HOM05D000725 ORTHO05D004053 1.2e-28 131.3 292 35.3
FvH4_7g25190 Fragaria vesca HOM05D000725 ORTHO05D004053 7.7e-28 128.6 295 34.6
vmacro06943 Vaccinium macrocarpon HOM05D000725 ORTHO05D004053 1.7e-27 127.5 273 36.6
Glyma.18G023900 Glycine max HOM05D000725 ORTHO05D004053 6.6e-27 125.6 287 34.5
arahy.Tifrunner.gnm1.ann1.MF2MUZ Arachis hypogaea HOM05D000725 ORTHO05D004053 2.5e-26 123.6 224 36.2
Sopen06g016030 Solanum pennellii HOM05D000725 ORTHO05D004053 1.2e-25 121.3 293 32.8
TAR636G1138 Trochodendron aralioides HOM05D000725 ORTHO05D004053 6.1e-25 119.0 210 37.1
FAN01G2255 Fragaria x ananassa HOM05D000725 ORTHO05D004053 8.0e-25 118.6 203 37.9
Solyc06g050510.3 Solanum lycopersicum HOM05D000725 ORTHO05D004053 8.0e-25 118.6 293 32.4
Nitab4.5_0000058g0030 Nicotiana tabacum HOM05D000725 ORTHO05D004053 2.3e-24 117.1 293 33.1
Peaxi162Scf00284g00316 Petunia axillaris HOM05D000725 ORTHO05D004053 2.3e-24 117.1 278 32.7
Lalb_Chr10g0105301 Lupinus albus HOM05D000725 ORTHO05D004053 3.0e-24 116.7 261 35.6
Cc02_g05980 Coffea canephora HOM05D000725 ORTHO05D004053 4.0e-24 116.3 280 32.5
Nitab4.5_0001817g0060 Nicotiana tabacum HOM05D000725 ORTHO05D004053 5.2e-24 115.9 293 33.4
PGSC0003DMG400023950 Solanum tuberosum HOM05D000725 ORTHO05D004053 5.2e-24 115.9 293 32.8
arahy.Tifrunner.gnm1.ann1.Y9Z9L7 Arachis hypogaea HOM05D000725 ORTHO05D004053 6.8e-24 115.5 224 34.8
TPR.G8343 Trifolium pratense HOM05D000725 ORTHO05D004053 3.4e-23 113.2 226 34.1
Sc11g0005370 Simmondsia chinensis HOM05D000725 ORTHO05D004053 4.4e-23 112.8 235 34.9
CAN.G830.1 Capsicum annuum HOM05D000725 ORTHO05D004053 5.7e-23 112.5 284 33.1
Oeu023910.1 Olea europaea HOM05D000725 ORTHO05D004053 5.7e-23 112.5 280 30.4
Medtr5g083300 Medicago truncatula HOM05D000725 ORTHO05D004053 7.5e-23 112.1 225 35.1
Psat2g030640 Pisum sativum HOM05D000725 ORTHO05D004053 9.8e-23 111.7 215 34.4
CSS0048207 Camellia sinensis var. sinensis HOM05D000725 ORTHO05D004053 1.3e-22 111.3 307 32.6
Phvul.001G246400 Phaseolus vulgaris HOM05D000725 ORTHO05D004053 8.3e-22 108.6 268 32.8
vmacro09999 Vaccinium macrocarpon HOM05D000725 ORTHO05D004053 1.4e-21 107.8 213 33.3
Lj6g0013892 Lotus japonicus HOM05D000725 ORTHO05D004053 2.4e-21 107.1 232 34.5
arahy.Tifrunner.gnm1.ann1.89IITC Arachis hypogaea HOM05D000725 ORTHO05D004053 3.2e-21 106.7 292 28.1
DCAR_011852 Daucus carota HOM05D000725 ORTHO05D004053 5.4e-21 105.9 300 30.7
arahy.Tifrunner.gnm1.ann1.M7CALB Arachis hypogaea HOM05D000725 ORTHO05D004053 1.6e-20 104.4 288 29.5
MSTRG.8922 Avicennia marina HOM05D000725 ORTHO05D004053 1.0e-19 101.7 275 29.8
SGA_v2.0_scaffold437G51620 Striga asiatica HOM05D000725 ORTHO05D004053 1.0e-19 101.7 209 31.1
Lalb_Chr17g0346921 Lupinus albus HOM05D000725 ORTHO05D004053 1.3e-19 101.3 320 30.0
Actinidia00658 Actinidia chinensis HOM05D000725 ORTHO05D004053 5.0e-19 99.4 201 36.3
AUR62012311 Chenopodium quinoa HOM05D000725 ORTHO05D004053 5.0e-19 99.4 301 30.9
SGA_v2.0_scaffold618G53215 Striga asiatica HOM05D000725 ORTHO05D004053 5.0e-19 99.4 281 29.5
Ciclev10030786m.g Citrus clementina HOM05D000725 ORTHO05D004053 1.1e-18 98.2 138 45.7
Migut.F00630 Erythranthe guttata HOM05D000725 ORTHO05D004053 1.9e-18 97.4 188 32.4
Lj6g0006147 Lotus japonicus HOM05D000725 ORTHO05D004053 4.3e-18 96.3 169 36.1
vmacro10000 Vaccinium macrocarpon HOM05D000725 ORTHO05D004053 5.6e-18 95.9 189 33.9
AUR62022951 Chenopodium quinoa HOM05D000725 ORTHO05D004053 1.2e-17 94.7 288 31.2
unitig_46.g18735 Utricularia gibba HOM05D000725 ORTHO05D004053 2.1e-17 94.0 223 30.5
Lsat_1_v5_gn_8_13481 Lactuca sativa HOM05D000725 ORTHO05D004053 2.8e-17 93.6 231 29.4
Ah.16g103940 Amaranthus hybridus HOM05D000725 ORTHO05D004053 3.6e-17 93.2 294 29.3
ECA233G5578 Erigeron canadensis HOM05D000725 ORTHO05D004053 1.0e-16 91.7 213 32.4
Medtr1g081750 Medicago truncatula HOM05D000725 ORTHO05D004053 6.8e-16 89.0 267 28.1
Psat5g144960 Pisum sativum HOM05D000725 ORTHO05D004053 6.8e-16 89.0 273 29.3
TPR.G30921 Trifolium pratense HOM05D000725 ORTHO05D004053 8.9e-16 88.6 220 33.2
Lsat_1_v5_gn_8_13121 Lactuca sativa HOM05D000725 ORTHO05D004053 2.0e-15 87.4 231 28.6
Nn2g14108 Nelumbo nucifera HOM05D000725 ORTHO05D004053 2.0e-15 87.4 200 29.0
HanXRQChr08g0221881 Helianthus annuus HOM05D000725 ORTHO05D004053 2.6e-15 87.0 193 31.6
Cc06_g20020 Coffea canephora HOM05D000725 ORTHO05D004053 3.4e-15 86.7 135 36.3
Medtr3g071860 Medicago truncatula HOM05D000725 ORTHO05D004053 5.8e-15 85.9 229 31.0
Ca_15161_v3 Cicer arietinum L. HOM05D000725 ORTHO05D004053 1.3e-14 84.7 221 32.6
Rhsim03G0147600 Rhododendron simsii HOM05D000725 ORTHO05D004053 6.4e-14 82.4 212 34.4
EL10Ac2g04901 Beta vulgaris HOM05D000725 ORTHO05D004053 8.3e-14 82.0 294 27.9
Lj6g0001238 Lotus japonicus HOM05D000725 ORTHO05D004053 1.9e-13 80.9 217 28.1
Lj1g0026032 Lotus japonicus HOM05D000725 ORTHO05D004053 7.0e-13 79.0 161 30.4
Hund13529 Selenicereus undatus HOM05D000725 ORTHO05D004053 9.2e-13 78.6 290 29.0
Lj4g0016792 Lotus japonicus HOM05D000725 ORTHO05D004053 1.2e-12 78.2 239 27.6
CARHR153730 Cardamine hirsuta HOM05D000725 ORTHO05D004053 5.0e-11 72.8 69 47.8
FAN06G2284 Fragaria x ananassa HOM05D000725 ORTHO05D004053 1.1e-10 71.6 214 30.4
TPR.G18784 Trifolium pratense HOM05D000725 ORTHO05D004053 7.3e-10 68.9 205 28.8
CDE04G0926 Ceratophyllum demersum HOM05D000725 ORTHO05D004053 9.5e-10 68.6 125 34.4
Medtr7g026650 Medicago truncatula HOM05D000725 ORTHO05D004053 9.5e-10 68.6 205 28.8
Rhsim09G0180400 Rhododendron simsii HOM05D000725 ORTHO05D004053 6.2e-09 65.9 144 31.2
Manes.15G171000 Manihot esculenta HOM05D000725 ORTHO05D002005 1.8e-08 64.3 137 35.8
MBI04_g43202_MAGBIO Magnolia biondii HOM05D000725 ORTHO05D004053 1.5e-07 61.2 180 28.3
PSO765G0016 Papaver somniferum HOM05D000725 ORTHO05D004053 2.2e-06 57.4 145 29.7
Sabra14G0035600 Salix brachista HOM05D000725 ORTHO05D002005 3.7e-06 56.6 82 40.2
Aqoxy4G01578 Aquilegia oxysepala HOM05D000725 ORTHO05D002005 4.9e-06 56.2 92 39.1
Lj1g0007175 Lotus japonicus HOM05D000725 ORTHO05D002005 6.4e-06 55.8 90 36.7
Aqoxy7G00421 Aquilegia oxysepala HOM05D000725 ORTHO05D004053 8.3e-06 55.5 179 27.4
THA.LOC104808746 Tarenaya hassleriana HOM05D000725 ORTHO05D002005 8.3e-06 55.5 89 40.4


User provided reference genes

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