Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G052000 Populus trichocarpa HOM05D004549 ORTHO05D005390 6.6e-100 367.5 197 100.0
Potri.008G181900 Populus trichocarpa HOM05D004549 ORTHO05D005390 4.4e-88 328.2 190 89.5
Sabra08G0138600 Salix brachista HOM05D004549 ORTHO05D005390 5.8e-88 327.8 192 89.6
Manes.13G019200 Manihot esculenta HOM05D004549 ORTHO05D005390 4.3e-83 311.6 198 84.8
Thecc.02G268400 Theobroma cacao HOM05D004549 ORTHO05D005390 9.5e-83 310.5 202 82.2
COL.COLO4_23543 Corchorus olitorius HOM05D004549 ORTHO05D005390 2.1e-82 309.3 202 80.2
Duzib251G0883 Durio zibethinus HOM05D004549 ORTHO05D005390 8.1e-82 307.4 202 81.7
Gohir.A01G156900 Gossypium hirsutum HOM05D004549 ORTHO05D005390 2.3e-81 305.8 202 81.7
Gohir.D01G153400 Gossypium hirsutum HOM05D004549 ORTHO05D005390 2.3e-81 305.8 202 81.7
Gorai.002G190000 Gossypium raimondii HOM05D004549 ORTHO05D005390 2.3e-81 305.8 202 81.7
Manes.12G018800 Manihot esculenta HOM05D004549 ORTHO05D005390 3.1e-81 305.4 198 81.3
Duzib268G0224 Durio zibethinus HOM05D004549 ORTHO05D005390 2.9e-79 298.9 202 80.2
Nn4g22506 Nelumbo nucifera HOM05D004549 ORTHO05D005390 1.4e-78 296.6 202 79.7
TAR374G0110 Trochodendron aralioides HOM05D004549 ORTHO05D005390 1.4e-78 296.6 201 78.6
TAR622G0384 Trochodendron aralioides HOM05D004549 ORTHO05D005390 4.1e-78 295.0 199 77.9
QL03p055962 Quercus lobata HOM05D004549 ORTHO05D005390 6.0e-77 291.2 202 78.2
Cpa.g.sc122.10 Carica papaya HOM05D004549 ORTHO05D005390 2.8e-74 282.3 197 81.7
TWI36G1485 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 2.4e-73 279.3 204 77.0
TWI18G0700 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 4.0e-73 278.5 204 77.5
Cfa009269 Carpinus fangiana HOM05D004549 ORTHO05D005390 2.0e-72 276.2 202 78.7
MBI11_g33737_MAGBIO Magnolia biondii HOM05D004549 ORTHO05D005390 2.0e-72 276.2 202 73.8
Haze_12303 Corylus avellana HOM05D004549 ORTHO05D005390 3.4e-72 275.4 202 78.2
ClCG08G017510 Citrullus lanatus HOM05D004549 ORTHO05D005390 4.4e-72 275.0 203 75.9
Aqoxy3G01353 Aquilegia oxysepala HOM05D004549 ORTHO05D005390 7.6e-72 274.2 194 73.7
Ciclev10032789m.g Citrus clementina HOM05D004549 ORTHO05D005390 1.3e-71 273.5 203 78.3
Prupe.1G239600 Prunus persica HOM05D004549 ORTHO05D005390 4.9e-71 271.6 202 79.2
Sed0013558 Sechium edule HOM05D004549 ORTHO05D005390 1.1e-70 270.4 203 73.9
Dinv11022 Davidia involucrata HOM05D004549 ORTHO05D005390 2.4e-70 269.2 197 74.6
CsaV3_2G025120 Cucumis sativus L. HOM05D004549 ORTHO05D005390 3.2e-70 268.9 203 74.9
MELO3C010708.2 Cucumis melo HOM05D004549 ORTHO05D005390 4.2e-70 268.5 203 74.9
Actinidia08109 Actinidia chinensis HOM05D004549 ORTHO05D005390 2.1e-69 266.2 200 73.5
Cc11_g16230 Coffea canephora HOM05D004549 ORTHO05D005390 2.7e-69 265.8 201 75.1
Oeu059785.1 Olea europaea HOM05D004549 ORTHO05D005390 2.7e-69 265.8 198 72.7
Rhsim12G0037700 Rhododendron simsii HOM05D004549 ORTHO05D005390 4.6e-69 265.0 201 73.1
Peaxi162Scf00128g00628 Petunia axillaris HOM05D004549 ORTHO05D005390 6.0e-69 264.6 203 74.4
Nitab4.5_0008037g0010 Nicotiana tabacum HOM05D004549 ORTHO05D005390 3.0e-68 262.3 200 76.0
CiPaw.11G070800 Carya illinoinensis HOM05D004549 ORTHO05D005390 3.9e-68 261.9 203 74.9
Oeu009692.1 Olea europaea HOM05D004549 ORTHO05D005390 6.6e-68 261.2 200 73.0
Atru.chr11.2199 Acer truncatum HOM05D004549 ORTHO05D005390 1.9e-67 259.6 205 74.1
MD16G1106800 Malus domestica HOM05D004549 ORTHO05D005390 3.3e-67 258.8 193 74.1
CAN.G959.23 Capsicum annuum HOM05D004549 ORTHO05D005390 4.3e-67 258.5 204 73.5
Hma1.2p1_0079F.1_g041330 Hydrangea macrophylla HOM05D004549 ORTHO05D005390 9.6e-67 257.3 204 72.1
Sopen10g028800 Solanum pennellii HOM05D004549 ORTHO05D005390 2.8e-66 255.8 200 73.0
Aqoxy5G03620 Aquilegia oxysepala HOM05D004549 ORTHO05D005390 6.2e-66 254.6 204 70.6
Duzib248G1249 Durio zibethinus HOM05D004549 ORTHO05D005390 1.4e-65 253.4 168 81.0
Oeu004470.1 Olea europaea HOM05D004549 ORTHO05D005390 1.8e-65 253.1 199 70.4
Peaxi162Scf00797g00002 Petunia axillaris HOM05D004549 ORTHO05D005390 1.8e-65 253.1 202 73.8
PGSC0003DMG400007201 Solanum tuberosum HOM05D004549 ORTHO05D005390 3.1e-65 252.3 201 73.6
Psat7g059720 Pisum sativum HOM05D004549 ORTHO05D005390 1.2e-64 250.4 202 70.8
CSS0012497 Camellia sinensis var. sinensis HOM05D004549 ORTHO05D005390 2.0e-64 249.6 205 69.8
arahy.Tifrunner.gnm1.ann1.J2LHWB Arachis hypogaea HOM05D004549 ORTHO05D005390 3.4e-64 248.8 204 69.6
FAN07G0129 Fragaria x ananassa HOM05D004549 ORTHO05D005390 4.4e-64 248.4 203 71.4
FAN17G2166 Fragaria x ananassa HOM05D004549 ORTHO05D005390 4.4e-64 248.4 203 71.4
FvH4_4g25080 Fragaria vesca HOM05D004549 ORTHO05D005390 7.6e-64 247.7 204 70.6
FAN12G3122 Fragaria x ananassa HOM05D004549 ORTHO05D005390 7.6e-64 247.7 204 70.6
MD13G1106700 Malus domestica HOM05D004549 ORTHO05D005390 9.9e-64 247.3 194 72.2
FAN22G0462 Fragaria x ananassa HOM05D004549 ORTHO05D005390 1.3e-63 246.9 203 70.4
FAN22G0861 Fragaria x ananassa HOM05D004549 ORTHO05D005390 1.3e-63 246.9 203 70.4
RcHm_v2.0_Chr4g0432261 Rosa chinensis HOM05D004549 ORTHO05D005390 2.2e-63 246.1 206 71.4
PSO478G3953 Papaver somniferum HOM05D004549 ORTHO05D005390 3.8e-63 245.4 206 68.0
PSO017G6717 Papaver somniferum HOM05D004549 ORTHO05D005390 6.4e-63 244.6 206 67.5
Glyma.11G245400 Glycine max HOM05D004549 ORTHO05D005390 5.4e-62 241.5 202 70.3
Ah.03g133600 Amaranthus hybridus HOM05D004549 ORTHO05D005390 2.7e-61 239.2 205 66.8
Lj6g0014292 Lotus japonicus HOM05D004549 ORTHO05D005390 2.7e-61 239.2 208 68.3
TWI75G1071 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 3.5e-61 238.8 197 70.1
Phvul.002G253700 Phaseolus vulgaris HOM05D004549 ORTHO05D005390 5.1e-60 235.0 197 68.0
Lj6g0007818 Lotus japonicus HOM05D004549 ORTHO05D005390 6.6e-60 234.6 208 69.7
TPR.G6278 Trifolium pratense HOM05D004549 ORTHO05D005390 1.5e-59 233.4 205 68.8
MSTRG.13333 Avicennia marina HOM05D004549 ORTHO05D005390 1.9e-59 233.0 201 65.7
Lsat_1_v5_gn_3_29100 Lactuca sativa HOM05D004549 ORTHO05D005390 1.9e-59 233.0 199 67.8
PGR102G3304 Punica granatum HOM05D004549 ORTHO05D005390 1.9e-59 233.0 205 67.3
VMungo0251G3559 Vigna mungo HOM05D004549 ORTHO05D005390 2.5e-59 232.6 197 67.0
EL10As2g23198 Beta vulgaris HOM05D004549 ORTHO05D005390 4.3e-59 231.9 203 67.0
Eucgr.B03236 Eucalyptus grandis HOM05D004549 ORTHO05D005390 5.6e-59 231.5 204 67.2
CsaV3_5G030690 Cucumis sativus L. HOM05D004549 ORTHO05D005354 1.6e-58 229.9 195 68.7
Medtr8g089610 Medicago truncatula HOM05D004549 ORTHO05D005390 1.6e-58 229.9 201 68.7
CANSAT01G2573 Cannabis sativa HOM05D004549 ORTHO05D005390 2.1e-58 229.6 211 65.4
MELO3C011911.2 Cucumis melo HOM05D004549 ORTHO05D005390 3.6e-58 228.8 198 69.2
Lalb_Chr11g0075581 Lupinus albus HOM05D004549 ORTHO05D005390 1.1e-57 227.3 214 64.0
SGA_v2.0_scaffold391G50640 Striga asiatica HOM05D002973 ORTHO05D003383 1.4e-57 226.9 197 64.5
Ca_17796_v3 Cicer arietinum L. HOM05D004549 ORTHO05D005390 1.8e-57 226.5 200 65.0
Migut.E00226 Erythranthe guttata HOM05D004549 ORTHO05D005390 4.0e-57 225.3 198 67.2
Psat5g094200 Pisum sativum HOM05D004549 ORTHO05D005390 4.0e-57 225.3 204 68.1
VMungo1383G1841 Vigna mungo HOM05D004549 ORTHO05D005390 6.9e-57 224.6 204 64.7
Ah.02g130410 Amaranthus hybridus HOM05D004549 ORTHO05D005390 3.4e-56 222.2 204 63.7
HanXRQChr17g0540101 Helianthus annuus HOM05D004549 ORTHO05D005390 5.8e-56 221.5 201 64.7
Ca_25121_v3 Cicer arietinum L. HOM05D004549 ORTHO05D005390 9.9e-56 220.7 204 65.2
Lalb_Chr23g0277771 Lupinus albus HOM05D004549 ORTHO05D005390 9.9e-56 220.7 213 63.4
Sed0000703 Sechium edule HOM05D004549 ORTHO05D005390 9.9e-56 220.7 196 65.3
Glyma.05G172300 Glycine max HOM05D004549 ORTHO05D005390 1.3e-55 220.3 199 63.8
ECA246G5237 Erigeron canadensis HOM05D004549 ORTHO05D005390 1.7e-55 219.9 197 67.5
Medtr3g086230 Medicago truncatula HOM05D004549 ORTHO05D005390 2.9e-55 219.2 203 67.5
Lalb_Chr07g0185571 Lupinus albus HOM05D004549 ORTHO05D005390 3.8e-55 218.8 205 64.9
Phvul.001G257100 Phaseolus vulgaris HOM05D004549 ORTHO05D005390 1.6e-53 213.4 198 62.6
ATR0824G259 Amborella trichopoda HOM05D004549 ORTHO05D005390 3.5e-53 212.2 190 61.1
Glyma.18G011800 Glycine max HOM05D004549 ORTHO05D005390 6.0e-53 211.5 203 62.6
SGA_v2.0_scaffold87G27112 Striga asiatica HOM05D004549 ORTHO05D005390 7.9e-53 211.1 201 63.2
Sc11g0000800 Simmondsia chinensis HOM05D004549 ORTHO05D005390 3.9e-52 208.8 202 60.9
A02p14440 Brassica napus HOM05D004549 ORTHO05D005390 1.5e-51 206.8 211 60.2
Sp5g22750 Schrenkiella parvula HOM05D004549 ORTHO05D005390 3.3e-51 205.7 207 60.9
BraA02t06507Z Brassica rapa HOM05D004549 ORTHO05D005390 7.4e-51 204.5 211 59.2
SalBow8G0177 Salvia bowleyana HOM05D004549 ORTHO05D005390 1.3e-50 203.8 199 61.3
CDE08G0789 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 1.6e-50 203.4 198 60.6
BcaC03g14868 Brassica carinata HOM05D004549 ORTHO05D005390 2.1e-50 203.0 211 58.8
C02p23390 Brassica napus HOM05D004549 ORTHO05D005390 2.1e-50 203.0 211 58.8
BolC2t08472H Brassica oleracea HOM05D004549 ORTHO05D005390 2.1e-50 203.0 211 58.8
BcaB05g24311 Brassica carinata HOM05D004549 ORTHO05D005390 3.7e-50 202.2 214 57.9
C06p38460 Brassica napus HOM05D004549 ORTHO05D005390 6.2e-50 201.4 208 60.6
BolC6t38943H Brassica oleracea HOM05D004549 ORTHO05D005390 6.2e-50 201.4 208 60.6
AUR62005536 Chenopodium quinoa HOM05D004549 ORTHO05D005390 6.2e-50 201.4 201 62.2
THA.LOC104807755 Tarenaya hassleriana HOM05D004549 ORTHO05D005390 6.2e-50 201.4 203 60.6
CDE06G0408 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 8.1e-50 201.1 200 59.5
Thhalv10019165m.g Eutrema salsugineum HOM05D004549 ORTHO05D005390 8.1e-50 201.1 213 60.6
A07p32430 Brassica napus HOM05D004549 ORTHO05D005390 3.1e-49 199.1 211 59.7
BraA07t30866Z Brassica rapa HOM05D004549 ORTHO05D005390 3.1e-49 199.1 211 59.7
unitig_62.g23660 Utricularia gibba HOM05D004549 ORTHO05D005390 4.0e-49 198.7 202 61.4
BcaB03g15371 Brassica carinata HOM05D004549 ORTHO05D005390 5.3e-49 198.4 214 59.3
AUR62024202 Chenopodium quinoa HOM05D004549 ORTHO05D005390 1.2e-48 197.2 202 61.4
BolC6t39200H Brassica oleracea HOM05D004549 ORTHO05D005390 2.0e-48 196.4 206 60.2
A07p34290 Brassica napus HOM05D004549 ORTHO05D005390 2.6e-48 196.1 207 60.4
BraA07t31058Z Brassica rapa HOM05D004549 ORTHO05D005390 1.0e-47 194.1 207 59.9
C06p42290 Brassica napus HOM05D004549 ORTHO05D005390 2.9e-47 192.6 207 59.4
CSS0014809 Camellia sinensis var. sinensis HOM05D004549 ORTHO05D005390 2.5e-46 189.5 160 65.6
CARHR060320 Cardamine hirsuta HOM05D004549 ORTHO05D005390 2.5e-46 189.5 192 58.3
BcaC08g46197 Brassica carinata HOM05D004549 ORTHO05D005390 9.3e-46 187.6 207 58.9
BcaB03g15168 Brassica carinata HOM05D004549 ORTHO05D005390 1.2e-45 187.2 208 57.7
BcaC08g46043 Brassica carinata HOM05D004549 ORTHO05D005390 3.5e-45 185.7 196 57.7
Aa31LG4G12260 Aethionema arabicum HOM05D004549 ORTHO05D005390 8.7e-44 181.0 202 55.9
Ciclev10022422m.g Citrus clementina HOM05D004549 ORTHO05D005390 8.7e-44 181.0 174 56.3
unitig_744.g24296 Utricularia gibba HOM05D004549 ORTHO05D005390 2.5e-43 179.5 201 58.2
CDE09G1301 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 4.0e-41 172.2 199 51.3
HPP92_017052 Vanilla planifolia HOM05D004549 ORTHO05D005390 2.0e-40 169.9 199 52.3
Mapoly0083s0047 Marchantia polymorpha HOM05D004549 ORTHO05D005390 2.2e-39 166.4 171 53.2
TPR.G35846 Trifolium pratense HOM05D004549 ORTHO05D005390 1.9e-38 163.3 176 63.1
Nn3g16614 Nelumbo nucifera HOM05D004549 ORTHO05D005390 3.5e-37 159.1 118 73.7
SEGI_41357 Sequoiadendron giganteum HOM05D004549 ORTHO05D005390 3.5e-37 159.1 138 61.6
Carub.0002s1417 Capsella rubella HOM05D004549 ORTHO05D005390 6.1e-37 158.3 202 50.5
AT1G67740 Arabidopsis thaliana HOM05D004549 ORTHO05D005390 3.9e-36 155.6 200 49.0
AL2G26440 Arabidopsis lyrata HOM05D004549 ORTHO05D005390 3.3e-35 152.5 202 49.5
Pp3c23_21280 Physcomitrium patens HOM05D004549 ORTHO05D005390 4.1e-33 145.6 146 54.1
Pp3c24_20010 Physcomitrium patens HOM05D004549 ORTHO05D005390 6.9e-33 144.8 175 46.3
Pp3c8_24120 Physcomitrium patens HOM05D004549 ORTHO05D005390 6.9e-33 144.8 178 45.5
Os08g0119800 Oryza sativa ssp. japonica HOM05D004549 ORTHO05D005390 3.8e-31 139.0 115 65.2
Prupe.5G159900 Prunus persica HOM05D004549 ORTHO05D005390 7.9e-29 131.3 126 58.7
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 1.1e-27 127.5 149 52.3
CBR_g38912 Chara braunii HOM05D004549 ORTHO05D005390 9.7e-27 124.4 138 48.6
FAN18G0098 Fragaria x ananassa HOM05D004549 ORTHO05D005390 1.1e-25 120.9 132 53.0
RcHm_v2.0_Chr7g0191491 Rosa chinensis HOM05D004549 ORTHO05D005390 3.1e-25 119.4 132 53.0
SMO137G0014 Selaginella moellendorffii HOM05D004549 ORTHO05D005390 1.2e-24 117.5 141 48.9
Medtr2g046810 Medicago truncatula HOM05D004549 ORTHO05D005390 5.5e-22 108.6 161 52.2
unitig_52.g17185 Utricularia gibba HOM05D004549 ORTHO05D005390 2.3e-20 103.2 77 70.1
Sc04g0001060 Simmondsia chinensis HOM05D004549 ORTHO05D005390 3.0e-20 102.8 140 47.9
Zm00001eb261260 Zea mays HOM05D004549 ORTHO05D005390 3.9e-20 102.4 200 39.0
FAN08G1783 Fragaria x ananassa HOM05D004549 ORTHO05D005390 2.2e-18 96.7 99 54.5
Ah.08g218300 Amaranthus hybridus HOM05D004549 ORTHO05D005390 3.7e-18 95.9 190 41.1
Solyc10g077120.3 Solanum lycopersicum HOM05D004549 ORTHO05D005390 4.8e-18 95.5 86 66.3
AUR62001261 Chenopodium quinoa HOM05D004549 ORTHO05D005390 6.3e-18 95.1 140 47.9
Zm00001eb173510 Zea mays HOM05D004549 ORTHO05D005390 3.1e-17 92.8 140 43.6
PRCOL_00004421 Prasinoderma coloniale HOM05D004549 ORTHO05D005390 5.0e-15 85.5 122 42.6
Cre10.g452100 Chlamydomonas reinhardtii HOM05D004549 ORTHO05D005390 1.2e-08 64.3 120 36.7
MCO16G101 Micromonas commoda HOM05D004549 ORTHO05D005390 3.5e-08 62.8 125 37.6


User provided reference genes

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