Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G024900 Populus trichocarpa HOM05D007625 ORTHO05D009738 1.6e-140 502.7 247 100.0
Sabra10G0014200 Salix brachista HOM05D007625 ORTHO05D009738 9.0e-131 470.3 246 93.5
Actinidia00027 Actinidia chinensis HOM05D007625 ORTHO05D009738 1.4e-102 376.7 247 72.9
Ciclev10005679m.g Citrus clementina HOM05D007625 ORTHO05D009738 5.2e-102 374.8 242 76.4
Atru.chr4.2832 Acer truncatum HOM05D007625 ORTHO05D009738 8.8e-102 374.0 246 74.0
Manes.03G194700 Manihot esculenta HOM05D007625 ORTHO05D009738 7.4e-101 370.9 243 76.5
TAR633G2367 Trochodendron aralioides HOM05D007625 ORTHO05D009738 2.8e-100 369.0 247 74.5
TWI09G0101 Tripterygium wilfordii HOM05D007625 ORTHO05D009738 1.4e-99 366.7 245 74.7
Thecc.04G284200 Theobroma cacao HOM05D007625 ORTHO05D009738 7.7e-98 360.9 248 73.0
QL06p008815 Quercus lobata HOM05D007625 ORTHO05D009738 2.2e-97 359.4 248 73.0
Prupe.1G137400 Prunus persica HOM05D007625 ORTHO05D009738 6.5e-97 357.8 245 73.5
CSS0007271 Camellia sinensis var. sinensis HOM05D007625 ORTHO05D009738 4.2e-96 355.1 242 70.2
CANSAT78G1499 Cannabis sativa HOM05D007625 ORTHO05D009738 5.5e-96 354.8 247 69.6
Duzib212G0442 Durio zibethinus HOM05D007625 ORTHO05D009738 5.5e-96 354.8 248 70.6
GSVIVG01017755001 Vitis vinifera HOM05D007625 ORTHO05D009738 1.0e-94 350.5 234 74.4
FAN07G2640 Fragaria x ananassa HOM05D007625 ORTHO05D009738 1.4e-94 350.1 242 69.4
Lsat_1_v5_gn_5_53001 Lactuca sativa HOM05D007625 ORTHO05D009738 1.4e-94 350.1 242 72.3
Psat4g025880 Pisum sativum HOM05D007625 ORTHO05D009738 1.8e-94 349.7 247 69.2
Lj4g0027770 Lotus japonicus HOM05D007625 ORTHO05D009738 3.0e-94 349.0 247 69.6
FvH4_4g17960 Fragaria vesca HOM05D007625 ORTHO05D009738 4.0e-94 348.6 245 68.2
Medtr4g119840 Medicago truncatula HOM05D007625 ORTHO05D009738 8.8e-94 347.4 247 68.4
RcHm_v2.0_Chr4g0422131 Rosa chinensis HOM05D007625 ORTHO05D009738 1.2e-93 347.1 245 68.6
Rhsim02G0009500 Rhododendron simsii HOM05D007625 ORTHO05D009738 1.5e-93 346.7 247 68.0
Ca_21505_v3 Cicer arietinum L. HOM05D007625 ORTHO05D009738 2.0e-93 346.3 247 69.2
BcaB06g25757 Brassica carinata HOM05D007625 ORTHO05D009738 4.4e-93 345.1 247 69.2
Gohir.A09G239300 Gossypium hirsutum HOM05D007625 ORTHO05D009738 2.2e-92 342.8 242 68.2
Dinv44384 Davidia involucrata HOM05D007625 ORTHO05D005073 2.8e-92 342.4 246 68.7
Gohir.D09G240200 Gossypium hirsutum HOM05D007625 ORTHO05D009738 3.7e-92 342.0 250 67.6
PGR031G0588 Punica granatum HOM05D007625 ORTHO05D009738 3.7e-92 342.0 247 68.0
AL3G29430 Arabidopsis lyrata HOM05D007625 ORTHO05D009738 4.8e-92 341.7 247 66.8
FAN12G1696 Fragaria x ananassa HOM05D007625 ORTHO05D009738 4.8e-92 341.7 240 67.9
CARHR091770 Cardamine hirsuta HOM05D007625 ORTHO05D009738 8.3e-92 340.9 247 66.4
MD13G1169000 Malus domestica HOM05D007625 ORTHO05D009738 8.3e-92 340.9 243 69.1
arahy.Tifrunner.gnm1.ann1.QKB3E6 Arachis hypogaea HOM05D007625 ORTHO05D009738 1.1e-91 340.5 249 66.3
arahy.Tifrunner.gnm1.ann1.96EVWK Arachis hypogaea HOM05D007625 ORTHO05D009738 1.4e-91 340.1 249 66.7
TPR.G3171 Trifolium pratense HOM05D007625 ORTHO05D009738 1.4e-91 340.1 249 68.3
Thhalv10021369m.g Eutrema salsugineum HOM05D007625 ORTHO05D009738 1.8e-91 339.7 247 68.0
VMungo1215G1867 Vigna mungo HOM05D007625 ORTHO05D009738 2.4e-91 339.3 249 67.1
MBI18_g04687_MAGBIO Magnolia biondii HOM05D007625 ORTHO05D009738 4.1e-91 338.6 247 67.6
Sp3g14890 Schrenkiella parvula HOM05D007625 ORTHO05D009738 4.1e-91 338.6 247 68.0
Rhsim02G0010500 Rhododendron simsii HOM05D007625 ORTHO05D009738 7.0e-91 337.8 239 68.2
Gorai.006G263200 Gossypium raimondii HOM05D007625 ORTHO05D009738 2.0e-90 336.3 241 67.2
Glyma.07G247900 Glycine max HOM05D007625 ORTHO05D009738 4.5e-90 335.1 247 65.2
Lalb_Chr13g0303611 Lupinus albus HOM05D007625 ORTHO05D009738 5.9e-90 334.7 244 67.2
Phvul.003G105100 Phaseolus vulgaris HOM05D007625 ORTHO05D009738 1.0e-89 334.0 250 66.4
SGA_v2.0_scaffold428G51521 Striga asiatica HOM05D007625 ORTHO05D009738 1.3e-89 333.6 242 68.6
Aqoxy2G02997 Aquilegia oxysepala HOM05D007625 ORTHO05D009738 2.9e-89 332.4 247 66.8
BraA05t22123Z Brassica rapa HOM05D007625 ORTHO05D009738 2.9e-89 332.4 262 64.9
PSO017G7039 Papaver somniferum HOM05D007625 ORTHO05D009738 1.9e-88 329.7 245 68.6
CSS0032939 Camellia sinensis var. sinensis HOM05D007625 ORTHO05D009738 4.2e-88 328.6 261 62.8
BolC5t33727H Brassica oleracea HOM05D007625 ORTHO05D009738 9.4e-88 327.4 262 63.7
Cc03_g01990 Coffea canephora HOM05D007625 ORTHO05D009738 9.4e-88 327.4 234 69.2
FAN12G4294 Fragaria x ananassa HOM05D007625 ORTHO05D009738 2.7e-87 325.9 234 67.5
C05p49750 Brassica napus HOM05D007625 ORTHO05D009738 8.0e-87 324.3 251 65.7
Eucgr.B01310 Eucalyptus grandis HOM05D007625 ORTHO05D009738 1.4e-86 323.6 242 68.2
FAN17G2144 Fragaria x ananassa HOM05D007625 ORTHO05D009738 1.8e-86 323.2 271 60.5
Hund20557 Selenicereus undatus HOM05D007625 ORTHO05D009738 3.0e-86 322.4 244 67.6
Migut.N00092 Erythranthe guttata HOM05D007625 ORTHO05D009738 1.2e-85 320.5 242 66.5
Hma1.2p1_1567F.1_g291060 Hydrangea macrophylla HOM05D007625 ORTHO05D009738 1.2e-85 320.5 211 73.9
AT3G16565 Arabidopsis thaliana HOM05D007625 ORTHO05D009738 2.6e-85 319.3 280 58.6
ATR0796G164 Amborella trichopoda HOM05D007625 ORTHO05D009738 2.8e-84 315.8 246 64.2
HanXRQChr03g0080751 Helianthus annuus HOM05D007625 ORTHO05D009738 2.8e-84 315.8 247 63.6
ECA240G3588 Erigeron canadensis HOM05D007625 ORTHO05D009738 4.1e-83 312.0 242 64.5
DCAR_027078 Daucus carota HOM05D007625 ORTHO05D009738 7.0e-83 311.2 249 62.2
BcaNung06438 Brassica carinata HOM05D007625 ORTHO05D009738 3.5e-82 308.9 220 68.6
Hma1.2p1_0078F.1_g040640 Hydrangea macrophylla HOM05D007625 ORTHO05D009738 4.5e-82 308.5 211 72.0
vmacro15237 Vaccinium macrocarpon HOM05D007625 ORTHO05D009738 8.6e-81 304.3 248 62.9
Cpa.g.sc16.167 Carica papaya HOM05D007625 ORTHO05D009738 1.5e-77 293.5 207 69.6
Lj3A816T27 Lonicera japonica HOM05D007625 ORTHO05D009738 2.9e-76 289.3 216 67.6
Os01g0120400 Oryza sativa ssp. japonica HOM05D007625 ORTHO05D009738 1.4e-75 287.0 245 58.0
SalBow5G0239 Salvia bowleyana HOM05D007625 ORTHO05D009738 7.0e-75 284.6 215 64.7
Nn3g21433 Nelumbo nucifera HOM05D007625 ORTHO05D009738 1.7e-68 263.5 247 58.7
AUR62035873 Chenopodium quinoa HOM05D007625 ORTHO05D009738 2.9e-68 262.7 195 67.2
Pp3c1_7890 Physcomitrium patens HOM05D007625 ORTHO05D009738 2.9e-68 262.7 248 57.3
Glyma.17G026200 Glycine max HOM05D007625 ORTHO05D009738 5.2e-62 241.9 222 57.7
Lj3A819G38 Lonicera japonica HOM05D007625 ORTHO05D009738 2.6e-61 239.6 259 53.7
CDE12G0709 Ceratophyllum demersum HOM05D007625 ORTHO05D009738 5.4e-59 231.9 245 53.5
Carub.0003s1629 Capsella rubella HOM05D007625 ORTHO05D009738 7.8e-58 228.0 151 68.2
SMO356G0461 Selaginella moellendorffii HOM05D007625 ORTHO05D009738 7.8e-58 228.0 243 51.4
Aa31LG8G3700 Aethionema arabicum HOM05D007625 ORTHO05D009738 1.9e-56 223.4 262 50.4
SMO002G0002 Selaginella moellendorffii HOM05D007625 ORTHO05D009738 1.6e-55 220.3 235 51.5
AagrBONN_evm.TU.Sc2ySwM_228.2358 Anthoceros agrestis HOM05D007625 ORTHO05D009738 2.6e-53 213.0 175 60.6
EL10Ac3g06592 Beta vulgaris HOM05D007625 ORTHO05D009738 2.2e-52 209.9 213 54.9
Sc19g0005180 Simmondsia chinensis HOM05D007625 ORTHO05D009738 4.6e-50 202.2 245 48.6
Zm00001eb334800 Zea mays HOM05D007625 ORTHO05D009738 3.0e-49 199.5 182 57.1
MCO16G322 Micromonas commoda HOM05D007625 ORTHO05D009738 9.3e-43 177.9 257 40.9
BcaB03g15776 Brassica carinata HOM05D007625 ORTHO05D009738 1.3e-31 141.0 117 64.1
unitig_0.g621 Utricularia gibba HOM05D007625 ORTHO05D009738 1.9e-24 117.1 147 46.9
Hma1.2p1_0785F.1_g217410 Hydrangea macrophylla HOM05D007625 ORTHO05D009738 2.8e-23 113.2 66 74.2
Cpa.g.c47082 Carica papaya HOM05D007625 ORTHO05D009738 2.9e-20 103.2 84 63.1
Medtr4g123440 Medicago truncatula HOM05D007625 ORTHO05D009738 1.2e-18 97.8 116 53.4
Aqoxy2G02999 Aquilegia oxysepala HOM05D007625 ORTHO05D009738 6.7e-17 92.0 66 66.7
Glyma.19G060100 Glycine max HOM05D007625 ORTHO05D009738 1.3e-15 87.8 99 49.5
MD16G1169600 Malus domestica HOM05D007625 ORTHO05D009738 5.3e-14 82.4 66 60.6
Carub.0006s2052 Capsella rubella HOM05D001816 ORTHO05D002001 3.5e-10 69.7 212 29.2
AT5G22800 Arabidopsis thaliana HOM05D001816 ORTHO05D002001 6.1e-10 68.9 212 29.2
PGR044G0467 Punica granatum HOM05D001816 ORTHO05D002001 7.9e-10 68.6 246 27.2
Aa31LG2G15270 Aethionema arabicum HOM05D001816 ORTHO05D002001 1.3e-09 67.8 218 28.9
BcaB05g22693 Brassica carinata HOM05D001816 ORTHO05D002001 1.3e-09 67.8 211 29.4
BcaC03g13917 Brassica carinata HOM05D001816 ORTHO05D002001 1.8e-09 67.4 210 30.0
C02p11280 Brassica napus HOM05D001816 ORTHO05D002001 1.8e-09 67.4 210 30.0
AL6G33900 Arabidopsis lyrata HOM05D001816 ORTHO05D002001 3.0e-09 66.6 218 28.9
BNapus_Darmor_BZH_scaffold_38p00390 Brassica napus HOM05D001816 ORTHO05D002001 3.0e-09 66.6 210 29.5
Thhalv10012575m.g Eutrema salsugineum HOM05D001816 ORTHO05D002001 3.0e-09 66.6 209 29.7
Rhsim03G0224600 Rhododendron simsii HOM05D001816 ORTHO05D002001 3.0e-09 66.6 227 29.1
BolC2t07196H Brassica oleracea HOM05D001816 ORTHO05D002001 3.9e-09 66.2 210 29.5
BraA02t05688Z Brassica rapa HOM05D001816 ORTHO05D002001 5.1e-09 65.9 210 29.5
ClCG10G011880 Citrullus lanatus HOM05D001816 ORTHO05D002001 1.5e-08 64.3 221 27.1
CsaV3_3G031480 Cucumis sativus L. HOM05D001816 ORTHO05D002001 1.5e-08 64.3 216 25.0
Sed0023453 Sechium edule HOM05D001816 ORTHO05D002001 1.5e-08 64.3 225 28.4
Eucgr.I01492 Eucalyptus grandis HOM05D001816 ORTHO05D002001 1.9e-08 63.9 211 28.4
Manes.04G066500 Manihot esculenta HOM05D001816 ORTHO05D002001 1.9e-08 63.9 258 26.0
Sp6g22620 Schrenkiella parvula HOM05D001816 ORTHO05D002001 2.5e-08 63.5 211 28.9
Sed0023914 Sechium edule HOM05D001816 ORTHO05D002001 2.5e-08 63.5 221 27.1
Carub.0001s3933 Capsella rubella HOM05D001816 ORTHO05D002001 3.3e-08 63.2 222 27.9
Ciclev10030624m.g Citrus clementina HOM05D001816 ORTHO05D002001 3.3e-08 63.2 250 25.6
Sed0006167 Sechium edule HOM05D001816 ORTHO05D002001 3.3e-08 63.2 215 24.7
Pp3c27_7320 Physcomitrium patens HOM05D001816 ORTHO05D002001 5.7e-08 62.4 215 27.4
A05p20290 Brassica napus HOM05D001816 ORTHO05D002001 7.4e-08 62.0 217 27.6
Cre08.g368900 Chlamydomonas reinhardtii HOM05D001816 ORTHO05D002001 7.4e-08 62.0 211 26.1
THA.LOC104807386 Tarenaya hassleriana HOM05D001816 ORTHO05D002001 7.4e-08 62.0 211 28.9
Hma1.2p1_0419F.1_g149540 Hydrangea macrophylla HOM05D001816 ORTHO05D002001 9.7e-08 61.6 220 26.4
Manes.11G108600 Manihot esculenta HOM05D001816 ORTHO05D002001 9.7e-08 61.6 216 27.3
CARHR040290 Cardamine hirsuta HOM05D001816 ORTHO05D002001 1.3e-07 61.2 234 27.4
DCAR_020432 Daucus carota HOM05D001816 ORTHO05D002001 1.3e-07 61.2 251 25.5
THA.LOC104801893 Tarenaya hassleriana HOM05D001816 ORTHO05D002001 1.3e-07 61.2 216 27.3
AL1G57820 Arabidopsis lyrata HOM05D001816 ORTHO05D002001 1.6e-07 60.8 254 26.4
BraA05t20939Z Brassica rapa HOM05D001816 ORTHO05D002001 1.6e-07 60.8 104 39.4
Sp1g37060 Schrenkiella parvula HOM05D001816 ORTHO05D002001 1.6e-07 60.8 216 28.7
Zm00001eb409500 Zea mays HOM05D001816 ORTHO05D002001 1.6e-07 60.8 243 25.5
CiPaw.05G167200 Carya illinoinensis HOM05D001816 ORTHO05D002001 2.2e-07 60.5 215 27.9
Cre02.g143200 Chlamydomonas reinhardtii HOM05D001816 ORTHO05D002001 2.2e-07 60.5 229 24.9
MD13G1007000 Malus domestica HOM05D001816 ORTHO05D002001 2.2e-07 60.5 250 24.0
Nn2g12439 Nelumbo nucifera HOM05D001816 ORTHO05D002001 2.2e-07 60.5 226 25.7
Nn8g39979 Nelumbo nucifera HOM05D001816 ORTHO05D002001 2.2e-07 60.5 216 26.4
SalBow2G2560 Salvia bowleyana HOM05D001816 ORTHO05D002001 2.2e-07 60.5 212 27.4
AT1G50200 Arabidopsis thaliana HOM05D001816 ORTHO05D002001 2.8e-07 60.1 254 26.4
Lsat_1_v5_gn_7_108581 Lactuca sativa HOM05D001816 ORTHO05D002001 2.8e-07 60.1 260 25.8
Duzib248G0227 Durio zibethinus HOM05D001816 ORTHO05D002001 3.7e-07 59.7 266 24.4
Eucgr.J00856 Eucalyptus grandis HOM05D001816 ORTHO05D002001 3.7e-07 59.7 251 27.1
HanXRQChr11g0337711 Helianthus annuus HOM05D001816 ORTHO05D002001 3.7e-07 59.7 260 25.0
Os10g0182000 Oryza sativa ssp. japonica HOM05D001816 ORTHO05D002001 3.7e-07 59.7 216 27.3
Actinidia24519 Actinidia chinensis HOM05D001816 ORTHO05D002001 4.8e-07 59.3 216 30.1
Haze_00547 Corylus avellana HOM05D001816 ORTHO05D002001 4.8e-07 59.3 229 26.6
Prupe.1G345900 Prunus persica HOM05D001816 ORTHO05D002001 4.8e-07 59.3 259 25.9
Aa31LG10G3980 Aethionema arabicum HOM05D001816 ORTHO05D002001 6.3e-07 58.9 267 26.2
Potri.005G094300 Populus trichocarpa HOM05D001816 ORTHO05D002001 6.3e-07 58.9 216 28.7
Actinidia08767 Actinidia chinensis HOM05D001816 ORTHO05D002001 8.2e-07 58.5 233 27.9
CBR_g34895 Chara braunii HOM05D001816 ORTHO05D002001 8.2e-07 58.5 231 28.1
ECA236G4276 Erigeron canadensis HOM05D001816 ORTHO05D002001 8.2e-07 58.5 215 27.4
Thhalv10011205m.g Eutrema salsugineum HOM05D001816 ORTHO05D002001 8.2e-07 58.5 209 27.3
Lj3g0010854 Lotus japonicus HOM05D001816 ORTHO05D002001 8.2e-07 58.5 220 27.7
Lj3g0027168 Lotus japonicus HOM05D001816 ORTHO05D002001 8.2e-07 58.5 220 27.7
Medtr4g074640 Medicago truncatula HOM05D001816 ORTHO05D002001 8.2e-07 58.5 220 26.4
vmacro06369 Vaccinium macrocarpon HOM05D001816 ORTHO05D002001 8.2e-07 58.5 228 27.2
Ah.08g210750 Amaranthus hybridus HOM05D001816 ORTHO05D002001 1.1e-06 58.2 252 25.4
BcaB04g17263 Brassica carinata HOM05D001816 ORTHO05D002001 1.1e-06 58.2 216 27.3
Gohir.D02G187500 Gossypium hirsutum HOM05D001816 ORTHO05D002001 1.4e-06 57.8 263 24.3
Gorai.005G210000 Gossypium raimondii HOM05D001816 ORTHO05D002001 1.4e-06 57.8 263 24.3
A08p03280 Brassica napus HOM05D001816 ORTHO05D002001 1.8e-06 57.4 217 26.7
BraA08t32361Z Brassica rapa HOM05D001816 ORTHO05D002001 1.8e-06 57.4 217 26.7
Gohir.A03G164100 Gossypium hirsutum HOM05D001816 ORTHO05D002001 1.8e-06 57.4 263 25.1
PRCOL_00002617 Prasinoderma coloniale HOM05D001816 ORTHO05D002001 1.8e-06 57.4 204 27.5
AUR62017503 Chenopodium quinoa HOM05D001816 ORTHO05D002001 2.4e-06 57.0 222 27.0
AUR62028574 Chenopodium quinoa HOM05D001816 ORTHO05D002001 3.1e-06 56.6 226 27.4
AUR62033529 Chenopodium quinoa HOM05D001816 ORTHO05D002001 3.1e-06 56.6 226 27.4
Ca_19037_v3 Cicer arietinum L. HOM05D001816 ORTHO05D002001 3.1e-06 56.6 220 25.5
Dinv29120 Davidia involucrata HOM05D001816 ORTHO05D002001 3.1e-06 56.6 227 26.0
MCO11G803 Micromonas commoda HOM05D001816 ORTHO05D002001 4.1e-06 56.2 208 27.4
C03p89530 Brassica napus HOM05D001816 ORTHO05D002001 6.9e-06 55.5 202 26.7
Lj8C169G8 Lonicera japonica HOM05D001816 ORTHO05D002001 9.0e-06 55.1 220 25.9


User provided reference genes

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