Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G162150 Populus trichocarpa HOM05D005259 ORTHO05D006402 0.0e+00 1727.6 858 100.0
Potri.008G162500 Populus trichocarpa HOM05D005259 ORTHO05D006402 0.0e+00 1405.6 878 83.6
Sabra08G0123900 Salix brachista HOM05D005259 ORTHO05D006402 0.0e+00 1254.6 873 76.1
Potri.010G076700 Populus trichocarpa HOM05D005259 ORTHO05D006402 1.9e-300 1035.8 901 63.6
Sabra10G0032100 Salix brachista HOM05D005259 ORTHO05D006402 2.6e-257 892.5 856 58.8
Manes.03G168800 Manihot esculenta HOM05D005259 ORTHO05D006402 1.9e-199 700.3 889 47.5
Atru.chr4.2229 Acer truncatum HOM05D005259 ORTHO05D006402 1.0e-181 641.3 868 45.0
Manes.15G037000 Manihot esculenta HOM05D005259 ORTHO05D006402 1.8e-181 640.6 892 44.1
Ciclev10004215m.g Citrus clementina HOM05D005259 ORTHO05D006402 9.3e-175 618.2 905 43.9
Cfa008379 Carpinus fangiana HOM05D005259 ORTHO05D006402 7.6e-169 598.6 878 43.3
Thecc.04G246200 Theobroma cacao HOM05D005259 ORTHO05D006402 1.6e-166 590.9 895 42.2
CiPaw.01G190300 Carya illinoinensis HOM05D005259 ORTHO05D001287 8.5e-160 568.5 878 42.0
TWI73G0531 Tripterygium wilfordii HOM05D005259 ORTHO05D006402 9.3e-159 565.1 877 42.5
COL.COLO4_15792 Corchorus olitorius HOM05D005259 ORTHO05D006402 1.3e-157 561.2 868 42.4
Duzib052G0218 Durio zibethinus HOM05D005259 ORTHO05D006402 5.1e-157 559.3 896 42.0
TAR633G1135 Trochodendron aralioides HOM05D005259 ORTHO05D006402 1.1e-156 558.1 920 39.9
Prupe.1G030800 Prunus persica HOM05D005259 ORTHO05D006402 2.5e-156 557.0 884 42.2
Duzib212G1015 Durio zibethinus HOM05D005259 ORTHO05D006402 7.4e-156 555.4 871 40.8
TAR362G0225 Trochodendron aralioides HOM05D005259 ORTHO05D006402 4.8e-155 552.7 926 40.4
CiPaw.02G116300 Carya illinoinensis HOM05D005259 ORTHO05D006402 9.1e-154 548.5 875 40.9
Duzib151G0402 Durio zibethinus HOM05D005259 ORTHO05D006402 6.1e-150 535.8 892 39.9
CSS0027429 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 2.4e-146 523.9 882 39.1
Cpa.g.sc58.48 Carica papaya HOM05D005259 ORTHO05D006402 6.9e-146 522.3 860 41.3
CSS0043582 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 1.5e-145 521.2 881 39.0
QL06p015741 Quercus lobata HOM05D005259 ORTHO05D006402 6.1e-142 509.2 844 41.8
MD16G1208700 Malus domestica HOM05D005259 ORTHO05D006402 1.0e-133 481.9 884 38.7
RcHm_v2.0_Chr4g0390511 Rosa chinensis HOM05D005259 ORTHO05D006402 1.6e-126 458.0 893 38.6
FAN12G0451 Fragaria x ananassa HOM05D005259 ORTHO05D006402 1.1e-119 435.3 883 37.0
FvH4_4g02690 Fragaria vesca HOM05D005259 ORTHO05D006402 3.6e-118 430.3 886 36.8
Actinidia04478 Actinidia chinensis HOM05D005259 ORTHO05D002253 7.5e-116 422.5 887 34.7
FAN17G1158 Fragaria x ananassa HOM05D005259 ORTHO05D006402 2.2e-115 421.0 890 36.1
Eucgr.H03158 Eucalyptus grandis HOM05D005259 ORTHO05D006402 1.4e-114 418.3 875 35.5
FAN22G1888 Fragaria x ananassa HOM05D005259 ORTHO05D006402 1.8e-114 417.9 883 35.8
GSVIVG01018119001 Vitis vinifera HOM05D005259 ORTHO05D006402 5.4e-114 416.4 885 34.5
Dinv29911 Davidia involucrata HOM05D005259 ORTHO05D006402 6.6e-112 409.5 647 40.5
Sc13g0005040 Simmondsia chinensis HOM05D005259 ORTHO05D006402 1.1e-111 408.7 901 34.2
Hma1.2p1_0650F.1_g195420 Hydrangea macrophylla HOM05D005259 ORTHO05D006402 2.1e-110 404.4 886 35.2
Peaxi162Scf00813g00016 Petunia axillaris HOM05D005259 ORTHO05D006402 4.9e-107 393.3 883 33.5
MBI04_g07579_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 1.8e-106 391.3 915 33.7
MD13G1207300 Malus domestica HOM05D005259 ORTHO05D006402 9.2e-106 389.0 883 34.8
ClCG05G004600 Citrullus lanatus HOM05D005259 ORTHO05D006402 1.6e-105 388.3 878 34.2
PSO210G6035 Papaver somniferum HOM05D005259 ORTHO05D006402 2.7e-105 387.5 894 32.4
PSO832G3620 Papaver somniferum HOM05D005259 ORTHO05D006402 4.6e-105 386.7 893 32.1
VMungo1215G2763 Vigna mungo HOM05D005259 ORTHO05D006402 2.5e-103 380.9 870 33.6
Gohir.A09G223300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 7.3e-103 379.4 845 35.0
Gorai.006G246800 Gossypium raimondii HOM05D005259 ORTHO05D006402 3.6e-102 377.1 845 35.0
Gohir.D09G225300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 8.0e-102 375.9 845 35.0
MELO3C006469.2 Cucumis melo HOM05D005259 ORTHO05D006402 2.3e-101 374.4 882 34.1
Sed0002321 Sechium edule HOM05D005259 ORTHO05D006402 3.1e-101 374.0 882 34.7
Glyma.01G234600 Glycine max HOM05D005259 ORTHO05D006402 9.8e-100 369.0 874 33.0
CAN.G1007.13 Capsicum annuum HOM05D005259 ORTHO05D006402 3.7e-99 367.1 887 31.9
Glyma.11G008300 Glycine max HOM05D005259 ORTHO05D006402 2.4e-98 364.4 876 32.6
arahy.Tifrunner.gnm1.ann1.SM0BS0 Arachis hypogaea HOM05D005259 ORTHO05D006402 9.2e-98 362.5 885 32.8
LjContig00222g0005017 Lotus japonicus HOM05D005259 ORTHO05D006402 2.0e-97 361.3 886 32.3
Nn1g02609 Nelumbo nucifera HOM05D005259 ORTHO05D006402 2.3e-96 357.8 925 31.9
PGSC0003DMG400001126 Solanum tuberosum HOM05D005259 ORTHO05D006402 7.3e-95 352.8 890 31.3
CsaV3_3G012580 Cucumis sativus L. HOM05D005259 ORTHO05D006402 3.6e-94 350.5 905 32.9
Lalb_Chr09g0320051 Lupinus albus HOM05D005259 ORTHO05D006402 3.4e-92 344.0 877 31.5
Nn3g19539 Nelumbo nucifera HOM05D005259 ORTHO05D006402 4.4e-92 343.6 931 30.8
Phvul.002G042000 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 7.5e-92 342.8 868 32.1
Medtr5g007040 Medicago truncatula HOM05D005259 ORTHO05D006402 1.3e-91 342.0 870 32.2
Nitab4.5_0004798g0010 Nicotiana tabacum HOM05D005259 ORTHO05D006402 8.3e-91 339.3 869 31.9
Aqoxy5G00317 Aquilegia oxysepala HOM05D005259 ORTHO05D006402 2.4e-90 337.8 906 31.8
vmacro08412 Vaccinium macrocarpon HOM05D005259 ORTHO05D006402 5.4e-90 336.7 893 31.5
Sopen09g032310 Solanum pennellii HOM05D005259 ORTHO05D006402 7.1e-90 336.3 884 31.2
Cc03_g04860 Coffea canephora HOM05D005259 ORTHO05D006402 9.2e-90 335.9 872 32.8
Oeu003588.2 Olea europaea HOM05D005259 ORTHO05D006402 3.9e-88 330.5 921 30.8
Rhsim04G0190300 Rhododendron simsii HOM05D005259 ORTHO05D006402 2.6e-84 317.8 890 30.0
Oeu049793.2 Olea europaea HOM05D005259 ORTHO05D006402 2.4e-82 311.2 902 29.5
Sed0017180 Sechium edule HOM05D005259 ORTHO05D006402 4.1e-82 310.5 874 32.5
Psat2g189680 Pisum sativum HOM05D005259 ORTHO05D006402 1.0e-80 305.8 866 30.0
Haze_11300 Corylus avellana HOM05D005259 ORTHO05D006402 3.1e-77 294.3 416 45.9
TPR.G37888 Trifolium pratense HOM05D005259 ORTHO05D006402 4.0e-77 293.9 887 30.1
MSTRG.9924 Avicennia marina HOM05D005259 ORTHO05D006402 1.2e-76 292.4 862 31.2
Nitab4.5_0000525g0240 Nicotiana tabacum HOM05D005259 ORTHO05D006402 4.4e-76 290.4 849 30.6
MSTRG.24702 Avicennia marina HOM05D005259 ORTHO05D006402 2.4e-74 284.6 869 30.3
DCAR_002351 Daucus carota HOM05D005259 ORTHO05D006402 1.3e-70 272.3 874 30.2
Ca_24427_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 2.6e-68 264.6 866 28.9
Actinidia40086 Actinidia chinensis HOM05D005259 ORTHO05D006402 1.7e-67 261.9 873 27.4
Sp2g08420 Schrenkiella parvula HOM05D005259 ORTHO05D006402 6.4e-67 260.0 875 29.5
Thhalv10003150m.g Eutrema salsugineum HOM05D005259 ORTHO05D006402 7.1e-66 256.5 864 29.6
AT5G43630 Arabidopsis thaliana HOM05D005259 ORTHO05D006402 4.3e-63 247.3 824 29.6
Carub.0008s0502 Capsella rubella HOM05D005259 ORTHO05D006402 6.2e-62 243.4 841 29.8
Dinv44635 Davidia involucrata HOM05D005259 ORTHO05D006402 1.4e-61 242.3 391 40.9
Aa31LG5G3600 Aethionema arabicum HOM05D005259 ORTHO05D006402 1.8e-61 241.9 829 28.6
BolC7t43150H Brassica oleracea HOM05D005259 ORTHO05D006402 1.4e-53 215.7 863 28.2
Medtr6g046940 Medicago truncatula HOM05D005259 ORTHO05D006402 1.4e-53 215.7 657 29.7
BcaC06g31686 Brassica carinata HOM05D005259 ORTHO05D006402 2.4e-53 214.9 878 26.8
BcaC06g34639 Brassica carinata HOM05D005259 ORTHO05D006402 4.0e-53 214.2 863 28.2
C07p26220 Brassica napus HOM05D005259 ORTHO05D006402 4.0e-53 214.2 863 28.2
BraA06t27646Z Brassica rapa HOM05D005259 ORTHO05D006402 4.0e-53 214.2 869 28.3
CDE07G1991 Ceratophyllum demersum HOM05D000989 ORTHO05D006402 2.0e-52 211.8 797 28.9
A06p47780 Brassica napus HOM05D005259 ORTHO05D006402 3.8e-51 207.6 870 28.0
ATR0665G554 Amborella trichopoda HOM05D005259 ORTHO05D006402 3.3e-47 194.5 923 25.1
Actinidia08442 Actinidia chinensis HOM05D005259 ORTHO05D006402 1.2e-44 186.0 371 36.1
Dinv44634 Davidia involucrata HOM05D005259 ORTHO05D006402 2.0e-44 185.3 325 39.1
BcaB07g30565 Brassica carinata HOM05D005259 ORTHO05D006402 1.9e-42 178.7 781 26.6
Actinidia08443 Actinidia chinensis HOM05D005259 ORTHO05D006402 1.0e-40 172.9 399 32.3
Glyma.10G185100 Glycine max HOM05D005259 ORTHO05D006402 7.4e-39 166.8 489 31.5
Nitab4.5_0004798g0040 Nicotiana tabacum HOM05D005259 ORTHO05D006402 7.4e-39 166.8 592 28.7
CARHR006260 Cardamine hirsuta HOM05D005259 ORTHO05D006402 2.4e-37 161.8 457 30.4
Solyc09g083390.3 Solanum lycopersicum HOM05D005259 ORTHO05D006402 6.5e-35 153.7 392 31.6
Lalb_Chr06g0169311 Lupinus albus HOM05D005259 ORTHO05D006402 6.1e-33 147.1 490 29.2
VMungo0720G1316 Vigna mungo HOM05D005259 ORTHO05D006402 5.1e-32 144.1 485 30.7
Lalb_Chr02g0150411 Lupinus albus HOM05D005259 ORTHO05D006402 4.4e-31 141.0 502 29.7
Actinidia05464 Actinidia chinensis HOM05D005259 ORTHO05D006402 4.1e-29 134.4 659 25.5
Nitab4.5_0000525g0230 Nicotiana tabacum HOM05D005259 ORTHO05D006402 2.9e-27 128.3 568 27.5
THA.LOC104815985 Tarenaya hassleriana HOM05D000856 ORTHO05D001792 1.2e-25 122.9 373 27.6
RcHm_v2.0_Chr7g0198831 Rosa chinensis HOM05D005259 ORTHO05D006402 2.1e-25 122.1 144 46.5
Phvul.007G125900 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 2.2e-22 112.1 468 28.8
Dinv29910 Davidia involucrata HOM05D005259 ORTHO05D006402 1.1e-21 109.8 164 42.1
Os01g0775100 Oryza sativa ssp. japonica HOM05D005259 ORTHO05D006402 2.4e-21 108.6 808 23.0
Migut.G00437 Erythranthe guttata HOM05D005259 ORTHO05D006402 2.9e-19 101.7 817 22.9
Lj5g0013708 Lotus japonicus HOM05D005259 ORTHO05D006402 2.9e-19 101.7 476 27.3
Lj6A656T71 Lonicera japonica HOM05D005259 ORTHO05D006402 1.9e-18 99.0 294 28.9
Nitab4.5_0000036g0130 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.9e-18 99.0 232 34.5
Cc00_g33140 Coffea canephora HOM05D005259 ORTHO05D006402 2.1e-17 95.5 123 44.7
HPP92_018440 Vanilla planifolia HOM05D005259 ORTHO05D006402 2.7e-17 95.1 530 22.5
HanXRQChr13g0424471 Helianthus annuus HOM05D005259 ORTHO05D006402 6.1e-17 94.0 234 31.6
HanXRQChr15g0468851 Helianthus annuus HOM05D005259 ORTHO05D006402 8.0e-17 93.6 250 32.0
Lsat_1_v5_gn_5_72841 Lactuca sativa HOM05D005259 ORTHO05D006402 8.0e-17 93.6 257 31.5
Lsat_1_v5_gn_3_123200 Lactuca sativa HOM05D005259 ORTHO05D006402 1.0e-16 93.2 204 33.8
ECA233G4142 Erigeron canadensis HOM05D005259 ORTHO05D006402 8.8e-16 90.1 232 32.3
SGA_v2.0_scaffold88G27281 Striga asiatica HOM05D005259 ORTHO05D006402 8.8e-16 90.1 399 24.1
ECA240G1753 Erigeron canadensis HOM05D005259 ORTHO05D006402 1.7e-14 85.9 228 31.1
Ca_09836_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 5.3e-13 80.9 392 25.5
Migut.N00239 Erythranthe guttata HOM05D005259 ORTHO05D006402 1.6e-12 79.3 123 36.6
SMO111G0058 Selaginella moellendorffii HOM05D007564 ORTHO05D013712 1.7e-11 75.9 378 25.9
SMO276G0057 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 5.0e-11 74.3 468 22.0
HanXRQChr03g0092361 Helianthus annuus HOM05D005259 ORTHO05D006402 1.5e-10 72.8 88 46.6
Cc00_g10240 Coffea canephora HOM05D005259 ORTHO05D006402 2.5e-10 72.0 80 47.5
THA.LOC104815984 Tarenaya hassleriana HOM05D005259 ORTHO05D006402 5.5e-10 70.9 238 29.4
SalBow3G4073 Salvia bowleyana HOM05D005259 ORTHO05D006402 1.0e-08 66.6 87 44.8
SMO205G0008 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 1.0e-08 66.6 394 24.1


User provided reference genes

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