Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G155800 Populus trichocarpa HOM05D004187 ORTHO05D004890 1.3e-99 366.3 176 100.0
Sabra08G0118600 Salix brachista HOM05D004187 ORTHO05D004890 7.4e-87 323.9 176 88.6
Prupe.1G018500 Prunus persica HOM05D004187 ORTHO05D004890 7.5e-71 270.8 175 71.4
Gohir.A10G118400 Gossypium hirsutum HOM05D004187 ORTHO05D004890 1.8e-69 266.2 186 65.6
Gorai.011G165600 Gossypium raimondii HOM05D004187 ORTHO05D004890 1.6e-68 263.1 186 65.1
Gohir.D10G148300 Gossypium hirsutum HOM05D004187 ORTHO05D004890 2.0e-68 262.7 186 65.6
Manes.15G031200 Manihot esculenta HOM05D004187 ORTHO05D004890 4.5e-68 261.5 176 71.0
Thecc.04G235800 Theobroma cacao HOM05D002650 ORTHO05D002924 5.9e-68 261.2 183 68.3
Cfa008463 Carpinus fangiana HOM05D004187 ORTHO05D004890 7.7e-68 260.8 196 64.3
Rhsim04G0199500 Rhododendron simsii HOM05D004187 ORTHO05D004890 1.3e-67 260.0 176 68.8
MD16G1197500 Malus domestica HOM05D004187 ORTHO05D004890 2.3e-67 259.2 175 68.0
Haze_11210 Corylus avellana HOM05D004187 ORTHO05D004890 8.6e-67 257.3 196 63.8
Ciclev10005993m.g Citrus clementina HOM05D004187 ORTHO05D004890 1.9e-66 256.1 171 68.4
Nn1g02390 Nelumbo nucifera HOM05D004187 ORTHO05D004890 5.5e-66 254.6 176 66.5
Manes.03G175300 Manihot esculenta HOM05D004187 ORTHO05D004890 1.2e-65 253.4 176 68.2
TAR362G0393 Trochodendron aralioides HOM05D004187 ORTHO05D004890 1.6e-65 253.1 176 67.6
TWI73G1209 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 6.1e-65 251.1 182 65.9
Actinidia40129 Actinidia chinensis HOM05D004187 ORTHO05D004890 1.0e-64 250.4 175 66.9
RcHm_v2.0_Chr4g0407591 Rosa chinensis HOM05D004187 ORTHO05D004890 1.0e-64 250.4 175 68.6
MELO3C006513.2 Cucumis melo HOM05D004187 ORTHO05D004890 2.3e-64 249.2 177 68.4
CsaV3_3G013040 Cucumis sativus L. HOM05D004187 ORTHO05D004890 2.3e-64 249.2 177 67.8
Sed0024336 Sechium edule HOM05D004187 ORTHO05D004890 2.3e-64 249.2 176 67.6
TWI53G1349 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 2.3e-64 249.2 180 67.2
CiPaw.02G122700 Carya illinoinensis HOM05D004187 ORTHO05D004890 5.2e-64 248.1 197 62.9
ClCG05G004990 Citrullus lanatus HOM05D004187 ORTHO05D004890 2.6e-63 245.7 183 66.1
QL06p001566 Quercus lobata HOM05D004187 ORTHO05D004890 3.4e-63 245.4 179 64.8
FvH4_4g00760 Fragaria vesca HOM05D004187 ORTHO05D004890 4.4e-63 245.0 175 66.3
FAN12G2319 Fragaria x ananassa HOM05D004187 ORTHO05D004890 4.4e-63 245.0 175 66.3
FAN22G0369 Fragaria x ananassa HOM05D004187 ORTHO05D004890 5.7e-63 244.6 175 66.3
Sed0012407 Sechium edule HOM05D004187 ORTHO05D004890 2.8e-62 242.3 177 66.7
GSVIVG01018017001 Vitis vinifera HOM05D004187 ORTHO05D004890 6.3e-62 241.1 176 64.8
Atru.chr4.2417 Acer truncatum HOM05D004187 ORTHO05D004890 1.8e-61 239.6 203 55.7
THA.LOC104803042 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 1.8e-61 239.6 177 61.0
Duzib212G0360 Durio zibethinus HOM05D004187 ORTHO05D004890 2.4e-61 239.2 176 61.9
FAN13G2545 Fragaria x ananassa HOM05D004187 ORTHO05D004890 4.1e-61 238.4 175 64.6
FvH4_5g32450 Fragaria vesca HOM05D004187 ORTHO05D004890 7.0e-61 237.7 175 65.1
FAN18G3642 Fragaria x ananassa HOM05D004187 ORTHO05D004890 7.0e-61 237.7 175 65.1
CANSAT78G1519 Cannabis sativa HOM05D004187 ORTHO05D004890 9.2e-61 237.3 180 63.9
vmacro15360 Vaccinium macrocarpon HOM05D004187 ORTHO05D004890 3.5e-60 235.3 173 62.4
Hma1.2p1_0207F.1_g088010 Hydrangea macrophylla HOM05D004187 ORTHO05D004890 4.5e-60 235.0 176 63.6
Atru.chr4.2392 Acer truncatum HOM05D004187 ORTHO05D004890 5.9e-60 234.6 203 54.7
Dinv25939 Davidia involucrata HOM05D004187 ORTHO05D004890 1.3e-59 233.4 176 64.2
Eucgr.H03428 Eucalyptus grandis HOM05D004187 ORTHO05D004890 1.7e-59 233.0 172 62.8
MBI11_g32998_MAGBIO Magnolia biondii HOM05D002650 ORTHO05D002924 5.6e-58 228.0 163 64.4
CSS0045006 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 2.1e-57 226.1 176 62.5
Rhsim02G0027200 Rhododendron simsii HOM05D004187 ORTHO05D004890 1.4e-56 223.4 177 61.6
Medtr5g006610 Medicago truncatula HOM05D004187 ORTHO05D004890 6.8e-56 221.1 177 61.6
Nitab4.5_0000050g0260 Nicotiana tabacum HOM05D004187 ORTHO05D004890 2.0e-55 219.5 175 58.3
AUR62001090 Chenopodium quinoa HOM05D004187 ORTHO05D004890 9.8e-55 217.2 175 57.1
PGR129G0008 Punica granatum HOM05D004187 ORTHO05D004890 1.3e-54 216.9 175 58.9
PGR142G1722 Punica granatum HOM05D004187 ORTHO05D004890 1.3e-54 216.9 175 58.9
CSS0034976 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 1.8e-53 213.0 199 54.3
Aqoxy2G03437 Aquilegia oxysepala HOM05D004187 ORTHO05D004890 4.1e-53 211.8 160 61.2
AUR62008916 Chenopodium quinoa HOM05D004187 ORTHO05D004890 4.1e-53 211.8 175 57.1
Glyma.01G235900 Glycine max HOM05D004187 ORTHO05D004890 4.1e-53 211.8 175 58.3
Lalb_Chr05g0211101 Lupinus albus HOM05D004187 ORTHO05D004890 2.0e-52 209.5 174 60.3
Nitab4.5_0000085g0360 Nicotiana tabacum HOM05D004187 ORTHO05D004890 5.9e-52 208.0 175 55.4
MSTRG.4047 Avicennia marina HOM05D004187 ORTHO05D004890 1.0e-51 207.2 162 58.6
SalBow2G2347 Salvia bowleyana HOM05D004187 ORTHO05D004890 2.3e-51 206.1 175 56.6
SalBow2G0844 Salvia bowleyana HOM05D004187 ORTHO05D004890 3.0e-51 205.7 162 58.0
Ca_24413_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 5.0e-51 204.9 175 56.6
Nitab4.5_0001547g0030 Nicotiana tabacum HOM05D004187 ORTHO05D004890 6.6e-51 204.5 175 54.9
arahy.Tifrunner.gnm1.ann1.Q6C7EF Arachis hypogaea HOM05D004187 ORTHO05D004890 1.5e-50 203.4 173 54.9
Carub.0003s2284 Capsella rubella HOM05D004187 ORTHO05D004890 1.5e-50 203.4 159 58.5
FAN08G0419 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.9e-50 203.0 120 75.0
arahy.Tifrunner.gnm1.ann1.LSRC2Y Arachis hypogaea HOM05D004187 ORTHO05D004890 2.5e-50 202.6 175 55.4
Ca_24412_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 2.5e-50 202.6 179 54.2
Ca_30960_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 2.5e-50 202.6 179 54.2
Sc19g0004030 Simmondsia chinensis HOM05D004187 ORTHO05D004890 2.5e-50 202.6 166 57.2
arahy.Tifrunner.gnm1.ann1.Q4QH0F Arachis hypogaea HOM05D004187 ORTHO05D004890 3.3e-50 202.2 175 54.9
VMungo0251G0090 Vigna mungo HOM05D004187 ORTHO05D004890 3.3e-50 202.2 175 55.4
arahy.Tifrunner.gnm1.ann1.8FXP11 Arachis hypogaea HOM05D004187 ORTHO05D004890 5.6e-50 201.4 175 56.0
PGSC0003DMG401028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 7.3e-50 201.1 175 52.0
Medtr5g006600 Medicago truncatula HOM05D004187 ORTHO05D004890 1.6e-49 199.9 151 61.6
AT3G22680 Arabidopsis thaliana HOM05D004187 ORTHO05D004890 2.8e-49 199.1 159 57.2
BcaC01g03429 Brassica carinata HOM05D004187 ORTHO05D004890 2.8e-49 199.1 161 57.1
BcaC01g03430 Brassica carinata HOM05D004187 ORTHO05D004890 2.8e-49 199.1 161 57.1
C03p52670 Brassica napus HOM05D004187 ORTHO05D004890 2.8e-49 199.1 161 57.1
BolC3t17535H Brassica oleracea HOM05D004187 ORTHO05D004890 2.8e-49 199.1 161 57.1
Sopen10g014270 Solanum pennellii HOM05D004187 ORTHO05D004890 2.8e-49 199.1 175 53.7
TPR.G37887 Trifolium pratense HOM05D004187 ORTHO05D004890 2.8e-49 199.1 132 68.2
Lj3A731T58 Lonicera japonica HOM05D004187 ORTHO05D004890 6.2e-49 198.0 175 57.7
Phvul.002G043400 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 6.2e-49 198.0 175 56.0
COL.COLO4_21526 Corchorus olitorius HOM05D004187 ORTHO05D004890 1.1e-48 197.2 113 73.5
LjContig00408g0013113 Lotus japonicus HOM05D004187 ORTHO05D004890 1.4e-48 196.8 124 70.2
TPR.G37866 Trifolium pratense HOM05D004187 ORTHO05D004890 1.4e-48 196.8 138 64.5
CDE07G0031 Ceratophyllum demersum HOM05D004187 ORTHO05D004890 1.8e-48 196.4 176 55.7
Psat2g190440 Pisum sativum HOM05D004187 ORTHO05D004890 1.8e-48 196.4 121 71.1
A03p42920 Brassica napus HOM05D004187 ORTHO05D004890 2.3e-48 196.1 161 56.5
BraA03t13436Z Brassica rapa HOM05D004187 ORTHO05D004890 2.3e-48 196.1 161 56.5
CARHR098560 Cardamine hirsuta HOM05D004187 ORTHO05D004890 2.3e-48 196.1 163 57.1
AL3G36980 Arabidopsis lyrata HOM05D004187 ORTHO05D004890 4.0e-48 195.3 160 56.9
THA.LOC104808564 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 6.8e-48 194.5 176 55.1
BraA05t21487Z Brassica rapa HOM05D004187 ORTHO05D004890 3.4e-47 192.2 162 57.4
Thhalv10021679m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 5.8e-47 191.4 158 55.7
A05p26020 Brassica napus HOM05D004187 ORTHO05D004890 9.8e-47 190.7 162 56.2
DCAR_031726 Daucus carota HOM05D004187 ORTHO05D004890 1.3e-46 190.3 159 55.3
Psat2g190480 Pisum sativum HOM05D004187 ORTHO05D004890 1.7e-46 189.9 151 58.3
BcaC05g28028 Brassica carinata HOM05D004187 ORTHO05D004890 4.9e-46 188.3 161 55.9
C05p40440 Brassica napus HOM05D004187 ORTHO05D004890 4.9e-46 188.3 161 55.9
BolC5t32785H Brassica oleracea HOM05D004187 ORTHO05D004890 4.9e-46 188.3 161 55.9
Glyma.11G007300 Glycine max HOM05D004187 ORTHO05D004890 4.9e-46 188.3 114 70.2
TAR633G0827 Trochodendron aralioides HOM05D004187 ORTHO05D004890 6.4e-46 188.0 123 67.5
PSO210G5857 Papaver somniferum HOM05D004187 ORTHO05D004890 1.1e-45 187.2 173 50.3
PSO170G4884 Papaver somniferum HOM05D004187 ORTHO05D004890 1.9e-45 186.4 173 50.3
Sp3g20440 Schrenkiella parvula HOM05D004187 ORTHO05D004890 1.9e-45 186.4 161 54.7
Cc10_g08560 Coffea canephora HOM05D004187 ORTHO05D004890 3.2e-45 185.7 171 53.8
BcaB06g26379 Brassica carinata HOM05D004187 ORTHO05D004890 5.4e-45 184.9 161 54.7
ECA233G0410 Erigeron canadensis HOM05D004187 ORTHO05D004890 9.2e-45 184.1 177 53.1
Aa31LG3G2350 Aethionema arabicum HOM05D004187 ORTHO05D004890 1.2e-44 183.7 164 54.3
Nitab4.5_0001792g0010 Nicotiana tabacum HOM05D004187 ORTHO05D004890 4.6e-44 181.8 114 66.7
ECA247G1582 Erigeron canadensis HOM05D004187 ORTHO05D004890 1.3e-43 180.3 177 52.0
Migut.G00365 Erythranthe guttata HOM05D004187 ORTHO05D004890 2.3e-43 179.5 175 48.6
ATR0665G390 Amborella trichopoda HOM05D004187 ORTHO05D004890 3.0e-43 179.1 175 52.0
Thhalv10017318m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 3.9e-43 178.7 121 64.5
Peaxi162Scf00245g00106 Petunia axillaris HOM05D004187 ORTHO05D004890 5.0e-43 178.3 167 52.1
SGA_v2.0_scaffold191G40487 Striga asiatica HOM05D004187 ORTHO05D004890 8.6e-43 177.6 132 57.6
HanXRQChr08g0219391 Helianthus annuus HOM05D004187 ORTHO05D004890 1.1e-42 177.2 161 52.8
ECA247G0434 Erigeron canadensis HOM05D000045 ORTHO05D004890 3.3e-42 175.6 163 49.7
Lsat_1_v5_gn_8_21341 Lactuca sativa HOM05D004187 ORTHO05D004890 4.3e-42 175.3 131 58.8
CAN.G1402.3 Capsicum annuum HOM05D004187 ORTHO05D004890 4.7e-41 171.8 198 43.9
AUR62001087 Chenopodium quinoa HOM05D004187 ORTHO05D004890 4.7e-41 171.8 185 48.1
Dinv03045 Davidia involucrata HOM05D004187 ORTHO05D004890 6.2e-41 171.4 123 61.0
HPP92_009615 Vanilla planifolia HOM05D004187 ORTHO05D004890 1.1e-40 170.6 169 47.9
Solyc09g082480.2 Solanum lycopersicum HOM05D004187 ORTHO05D004890 3.1e-40 169.1 122 58.2
Actinidia32414 Actinidia chinensis HOM05D004187 ORTHO05D004890 4.0e-40 168.7 116 61.2
Solyc10g045190.3 Solanum lycopersicum HOM05D004187 ORTHO05D004890 2.0e-39 166.4 114 62.3
PGSC0003DMG402028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.0e-39 166.4 114 61.4
Rhsim03G0003800 Rhododendron simsii HOM05D004187 ORTHO05D004890 2.6e-39 166.0 171 47.4
Peaxi162Scf00092g00016 Petunia axillaris HOM05D004187 ORTHO05D004890 5.8e-39 164.9 119 58.8
Sopen09g031340 Solanum pennellii HOM05D004187 ORTHO05D004890 5.8e-39 164.9 122 56.6
PGSC0003DMG400039476 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.2e-38 162.9 114 57.9
Thhalv10029384m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 8.3e-38 161.0 126 58.7
unitig_22.g6822 Utricularia gibba HOM05D004187 ORTHO05D004890 1.3e-35 153.7 177 42.9
Sopen09g031300 Solanum pennellii HOM05D004187 ORTHO05D004890 3.3e-34 149.1 114 55.3
PGSC0003DMG400040737 Solanum tuberosum HOM05D004187 ORTHO05D004890 6.2e-33 144.8 109 55.0
Prupe.2G235500 Prunus persica HOM05D004187 ORTHO05D004890 8.1e-33 144.4 127 48.8
Potri.008G076500 Populus trichocarpa HOM05D004187 ORTHO05D004890 8.9e-32 141.0 120 52.5
RcHm_v2.0_Chr1g0367131 Rosa chinensis HOM05D004187 ORTHO05D004890 1.5e-31 140.2 124 52.4
QL08p059729 Quercus lobata HOM05D004187 ORTHO05D004890 2.6e-31 139.4 118 49.2
Cfa001472 Carpinus fangiana HOM05D004187 ORTHO05D004890 5.8e-31 138.3 122 52.5
Haze_17068 Corylus avellana HOM05D004187 ORTHO05D004890 7.6e-31 137.9 128 49.2
PGSC0003DMG400039782 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.3e-30 137.1 103 54.4
COL.COLO4_15044 Corchorus olitorius HOM05D004187 ORTHO05D004890 6.4e-30 134.8 123 49.6
Manes.12G002301 Manihot esculenta HOM05D004187 ORTHO05D004890 7.1e-29 131.3 109 56.0
Atru.chr1.2916 Acer truncatum HOM05D004187 ORTHO05D004890 9.2e-29 131.0 116 50.0
Sopen09g031290 Solanum pennellii HOM05D004187 ORTHO05D004890 1.3e-27 127.1 97 56.7
Nn6g35138 Nelumbo nucifera HOM05D004187 ORTHO05D004890 2.3e-27 126.3 110 56.4
Duzib114G0324 Durio zibethinus HOM05D004187 ORTHO05D004890 3.3e-26 122.5 107 47.7
Atru.chr7.913 Acer truncatum HOM05D004187 ORTHO05D004890 2.1e-25 119.8 111 46.8
Solyc09g082430.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 2.8e-25 119.4 96 55.2
Sabra10G0059200 Salix brachista HOM05D004187 ORTHO05D004890 1.1e-24 117.5 125 52.8
Solyc09g082420.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.8e-24 116.7 93 55.9
Lalb_Chr10g0091621 Lupinus albus HOM05D004187 ORTHO05D004890 3.1e-24 115.9 118 45.8
PGSC0003DMG400032269 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.2e-23 114.0 84 54.8
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 8.4e-22 107.8 122 45.9
Ca_12246_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 1.2e-20 104.0 107 47.7
Atru.chr1.2920 Acer truncatum HOM05D004187 ORTHO05D004890 1.6e-20 103.6 125 42.4
Lj1g0009372 Lotus japonicus HOM05D004187 ORTHO05D004890 2.7e-20 102.8 114 43.9
Lj1g0019332 Lotus japonicus HOM05D004187 ORTHO05D004890 2.7e-20 102.8 114 43.9
VMungo1383G1788 Vigna mungo HOM05D004187 ORTHO05D004890 3.5e-20 102.4 173 34.7
Phvul.008G010500 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 7.8e-20 101.3 118 40.7
Lj1g0011366 Lotus japonicus HOM05D004187 ORTHO05D004890 3.9e-19 99.0 114 42.1
PGSC0003DMG400013771 Solanum tuberosum HOM05D004187 ORTHO05D004890 6.6e-19 98.2 77 51.9
Solyc09g082440.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 4.3e-18 95.5 76 56.6
PGSC0003DMG400032265 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.4e-16 90.5 68 51.5
Lalb_Chr16g0376451 Lupinus albus HOM05D004187 ORTHO05D004890 3.1e-16 89.4 102 49.0
Thecc.10G042200 Theobroma cacao HOM05D009017 ORTHO05D010462 2.2e-14 83.2 140 31.4
Potri.010G083751 Populus trichocarpa HOM05D004187 ORTHO05D004890 9.3e-13 77.8 41 80.5
Gohir.A10G219300 Gossypium hirsutum HOM05D009017 ORTHO05D010462 6.7e-11 71.6 99 36.4
Zm00001eb275620 Zea mays HOM05D004187 ORTHO05D004890 1.5e-10 70.5 48 64.6
BcaB03g14654 Brassica carinata HOM05D004187 ORTHO05D004890 4.3e-10 68.9 72 41.7
TAR636G2514 Trochodendron aralioides HOM05D007386 ORTHO05D009210 9.0e-08 61.2 52 59.6


User provided reference genes

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