Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G101200 Populus trichocarpa HOM05D004611 ORTHO05D005794 0.0e+00 2161.3 1142 100.0
Sabra08G0076500 Salix brachista HOM05D004611 ORTHO05D005794 0.0e+00 2049.6 1135 93.5
Manes.03G208700 Manihot esculenta HOM05D004611 ORTHO05D005794 0.0e+00 1710.3 1150 78.7
Prupe.1G111500 Prunus persica HOM05D004611 ORTHO05D005794 0.0e+00 1628.2 1166 74.4
CiPaw.02G072100 Carya illinoinensis HOM05D004611 ORTHO05D005794 0.0e+00 1621.3 1170 73.3
TWI73G0848 Tripterygium wilfordii HOM05D004611 ORTHO05D005794 0.0e+00 1615.1 1160 75.4
Cfa015689 Carpinus fangiana HOM05D004611 ORTHO05D005794 0.0e+00 1612.8 1169 74.0
Gohir.A02G056200 Gossypium hirsutum HOM05D004611 ORTHO05D005794 0.0e+00 1602.8 1150 73.9
QL06p013322 Quercus lobata HOM05D004611 ORTHO05D005794 0.0e+00 1599.3 1166 73.1
RcHm_v2.0_Chr4g0426211 Rosa chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1597.4 1158 73.7
MD13G1148000 Malus domestica HOM05D004611 ORTHO05D005794 0.0e+00 1589.3 1187 71.8
MD16G1147800 Malus domestica HOM05D004611 ORTHO05D005794 0.0e+00 1580.1 1185 72.0
FvH4_4g20770 Fragaria vesca HOM05D004611 ORTHO05D005794 0.0e+00 1578.5 1159 73.3
Thecc.04G307400 Theobroma cacao HOM05D004611 ORTHO05D005794 0.0e+00 1577.8 1150 73.4
ClCG06G004360 Citrullus lanatus HOM05D004611 ORTHO05D005794 0.0e+00 1569.3 1151 72.4
Lj6A696G31 Lonicera japonica HOM05D004611 ORTHO05D005794 0.0e+00 1568.5 1184 71.5
FAN07G0444 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1567.7 1200 70.8
Ciclev10004185m.g Citrus clementina HOM05D004611 ORTHO05D005794 0.0e+00 1565.4 1188 71.7
Glyma.09G031900 Glycine max HOM05D004611 ORTHO05D005794 0.0e+00 1562.4 1180 71.4
PGR004G0015 Punica granatum HOM05D004611 ORTHO05D005794 0.0e+00 1559.3 1159 71.9
COL.COLO4_34558 Corchorus olitorius HOM05D004611 ORTHO05D005794 0.0e+00 1557.0 1147 72.1
Duzib151G0109 Durio zibethinus HOM05D004611 ORTHO05D005794 0.0e+00 1555.4 1148 72.6
CSS0006805 Camellia sinensis var. sinensis HOM05D004611 ORTHO05D005794 0.0e+00 1554.7 1174 70.9
Gorai.005G069100 Gossypium raimondii HOM05D004611 ORTHO05D005794 0.0e+00 1554.7 1151 72.3
FAN12G0652 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1552.7 1200 70.6
Gohir.D02G061400 Gossypium hirsutum HOM05D004611 ORTHO05D005794 0.0e+00 1551.6 1148 72.3
arahy.Tifrunner.gnm1.ann1.VX19JK Arachis hypogaea HOM05D004611 ORTHO05D005794 0.0e+00 1551.2 1171 71.2
arahy.Tifrunner.gnm1.ann1.J0E0JD Arachis hypogaea HOM05D004611 ORTHO05D005794 0.0e+00 1548.1 1171 71.1
Sed0020756 Sechium edule HOM05D004611 ORTHO05D005794 0.0e+00 1545.8 1159 70.8
Nn8g40813 Nelumbo nucifera HOM05D004611 ORTHO05D005794 0.0e+00 1545.4 1163 70.0
Atru.chr4.3104 Acer truncatum HOM05D004611 ORTHO05D005794 0.0e+00 1541.2 1147 72.8
Eucgr.H04083 Eucalyptus grandis HOM05D004611 ORTHO05D005794 0.0e+00 1540.0 1171 70.1
Lalb_Chr18g0058501 Lupinus albus HOM05D004611 ORTHO05D005794 0.0e+00 1535.8 1171 70.3
Rhsim02G0001700 Rhododendron simsii HOM05D004611 ORTHO05D005794 0.0e+00 1534.6 1169 69.7
vmacro15164 Vaccinium macrocarpon HOM05D004611 ORTHO05D005794 0.0e+00 1534.2 1172 70.1
Actinidia02513 Actinidia chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1530.4 1181 69.3
Lj6g0013514 Lotus japonicus HOM05D004611 ORTHO05D005794 0.0e+00 1525.0 1171 70.9
MELO3C021251.2 Cucumis melo HOM05D004611 ORTHO05D005794 0.0e+00 1505.0 1151 69.8
Glyma.15G136900 Glycine max HOM05D004611 ORTHO05D005794 0.0e+00 1504.2 1179 69.7
DCAR_030442 Daucus carota HOM05D004611 ORTHO05D005794 0.0e+00 1494.6 1149 69.1
Nitab4.5_0000062g0520 Nicotiana tabacum HOM05D004611 ORTHO05D005794 0.0e+00 1491.5 1170 68.5
CANSAT78G0742 Cannabis sativa HOM05D004611 ORTHO05D005794 0.0e+00 1488.4 1190 69.2
CsaV3_6G000020 Cucumis sativus L. HOM05D004611 ORTHO05D005794 0.0e+00 1488.4 1151 69.2
Ca_00946_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 0.0e+00 1487.2 1172 69.1
Ca_00952_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 0.0e+00 1487.2 1172 69.1
Phvul.006G121000 Phaseolus vulgaris HOM05D004611 ORTHO05D005794 0.0e+00 1483.8 1174 69.0
Psat1g162720 Pisum sativum HOM05D004611 ORTHO05D005794 0.0e+00 1479.5 1176 68.7
Haze_00831 Corylus avellana HOM05D004611 ORTHO05D005794 0.0e+00 1472.6 1168 69.2
GSVIVG01034941001 Vitis vinifera HOM05D004611 ORTHO05D005794 0.0e+00 1472.6 1138 69.8
VMungo0540G0237 Vigna mungo HOM05D004611 ORTHO05D005794 0.0e+00 1464.5 1171 68.7
THA.LOC104818864 Tarenaya hassleriana HOM05D004611 ORTHO05D005794 0.0e+00 1463.4 1147 68.9
PSO541G3737 Papaver somniferum HOM05D004611 ORTHO05D005794 0.0e+00 1463.0 1152 67.5
PSO675G3276 Papaver somniferum HOM05D004611 ORTHO05D005794 0.0e+00 1455.3 1153 67.5
Aqoxy2G02628 Aquilegia oxysepala HOM05D004611 ORTHO05D005794 0.0e+00 1454.5 1189 66.2
Cc03_g00470 Coffea canephora HOM05D004611 ORTHO05D005794 0.0e+00 1448.3 1165 67.1
MSTRG.21753 Avicennia marina HOM05D004611 ORTHO05D005794 0.0e+00 1446.0 1164 66.8
AUR62030016 Chenopodium quinoa HOM05D004611 ORTHO05D005794 0.0e+00 1446.0 1161 66.6
Migut.N00024 Erythranthe guttata HOM05D004611 ORTHO05D005794 0.0e+00 1444.5 1157 66.9
CAN.G179.3 Capsicum annuum HOM05D004611 ORTHO05D005794 0.0e+00 1437.2 1170 66.8
SGA_v2.0_scaffold123G33405 Striga asiatica HOM05D004611 ORTHO05D005794 0.0e+00 1431.4 1219 65.2
AL8G23880 Arabidopsis lyrata HOM05D004611 ORTHO05D005794 0.0e+00 1424.8 1148 67.8
CARHR258790 Cardamine hirsuta HOM05D004611 ORTHO05D005794 0.0e+00 1419.8 1146 67.5
AT5G49930 Arabidopsis thaliana HOM05D004611 ORTHO05D005794 0.0e+00 1417.1 1147 67.4
Lsat_1_v5_gn_1_40220 Lactuca sativa HOM05D004611 ORTHO05D005794 0.0e+00 1411.4 1144 66.3
Thhalv10012510m.g Eutrema salsugineum HOM05D004611 ORTHO05D005794 0.0e+00 1407.1 1171 66.4
BcaB01g02933 Brassica carinata HOM05D004611 ORTHO05D005794 0.0e+00 1406.0 1170 66.3
Sc25g0001590 Simmondsia chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1405.6 1127 67.1
Carub.0008s0980 Capsella rubella HOM05D004611 ORTHO05D005794 0.0e+00 1404.0 1147 66.5
BcaC01g04844 Brassica carinata HOM05D004611 ORTHO05D005794 0.0e+00 1402.9 1166 65.8
C03p33270 Brassica napus HOM05D004611 ORTHO05D005794 0.0e+00 1402.5 1166 66.0
BolC3t15649H Brassica oleracea HOM05D004611 ORTHO05D005794 0.0e+00 1401.3 1169 66.0
BraA03t11969Z Brassica rapa HOM05D004611 ORTHO05D005794 0.0e+00 1399.8 1169 66.0
DCAR_002526 Daucus carota HOM05D004611 ORTHO05D005794 0.0e+00 1397.5 1169 65.4
Sp6g11490 Schrenkiella parvula HOM05D004611 ORTHO05D005794 0.0e+00 1397.1 1175 65.9
A03p27560 Brassica napus HOM05D004611 ORTHO05D005794 0.0e+00 1394.8 1170 65.7
ATR0693G069 Amborella trichopoda HOM05D004611 ORTHO05D005794 0.0e+00 1394.0 1154 65.2
TPR.G10113 Trifolium pratense HOM05D004611 ORTHO05D005794 0.0e+00 1389.8 1143 66.0
Aa31LG3G6800 Aethionema arabicum HOM05D004611 ORTHO05D005794 0.0e+00 1387.5 1148 66.0
MBI19_g32689_MAGBIO Magnolia biondii HOM05D004611 ORTHO05D005794 0.0e+00 1383.2 1171 64.9
Ah.07g203900 Amaranthus hybridus HOM05D004611 ORTHO05D005794 0.0e+00 1373.6 1168 64.4
AUR62002591 Chenopodium quinoa HOM05D004611 ORTHO05D005794 0.0e+00 1373.2 1160 64.8
EL10Ac3g06291 Beta vulgaris HOM05D004611 ORTHO05D005794 0.0e+00 1372.1 1160 64.7
HanXRQChr11g0353941 Helianthus annuus HOM05D004611 ORTHO05D005794 0.0e+00 1370.1 1183 64.6
ECA247G1486 Erigeron canadensis HOM05D004611 ORTHO05D005794 0.0e+00 1337.4 1157 63.5
Os12g0564600 Oryza sativa ssp. japonica HOM05D004611 ORTHO05D005794 0.0e+00 1299.6 1175 61.5
Zm00001eb136770 Zea mays HOM05D004611 ORTHO05D005794 0.0e+00 1291.6 1217 59.5
TAR362G1323 Trochodendron aralioides HOM05D004611 ORTHO05D005794 0.0e+00 1279.6 950 71.7
Dinv15127 Davidia involucrata HOM05D004611 ORTHO05D005794 0.0e+00 1277.7 908 74.8
Nitab4.5_0003678g0010 Nicotiana tabacum HOM05D004611 ORTHO05D005794 0.0e+00 1165.6 1051 61.5
FAN17G1213 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1163.7 927 69.0
Pp3c6_29680 Physcomitrium patens HOM05D004611 ORTHO05D005794 0.0e+00 1106.7 1251 51.5
AagrBONN_evm.TU.Sc2ySwM_344.977 Anthoceros agrestis HOM05D004611 ORTHO05D005794 0.0e+00 1080.1 1225 50.9
CDE02G0179 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 0.0e+00 1080.1 751 73.2
Mapoly0029s0152 Marchantia polymorpha HOM05D004611 ORTHO05D005794 3.8e-309 1065.1 1232 49.9
SMO356G0321 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 2.1e-291 1006.1 1156 50.8
GSVIVG01017617001 Vitis vinifera HOM05D004611 ORTHO05D005794 3.9e-277 958.7 760 67.1
CBR_g49302 Chara braunii HOM05D004611 ORTHO05D005794 4.0e-258 895.6 1387 43.8
Peaxi162Scf00126g01513 Petunia axillaris HOM05D004611 ORTHO05D005794 2.1e-243 846.7 608 73.0
Solyc01g057850.4 Solanum lycopersicum HOM05D004611 ORTHO05D005794 1.8e-237 827.0 611 72.0
Sopen01g023180 Solanum pennellii HOM05D004611 ORTHO05D005794 2.0e-225 786.9 565 73.1
PGSC0003DMG401001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 1.0e-224 784.6 558 74.2
unitig_746.g26903 Utricularia gibba HOM05D004611 ORTHO05D005794 1.2e-222 777.7 640 65.3
Oeu045272.1 Olea europaea HOM05D004611 ORTHO05D005794 1.1e-218 764.6 557 72.2
Sopen01g023170 Solanum pennellii HOM05D004611 ORTHO05D005794 6.5e-208 728.8 622 64.1
Oeu045271.1 Olea europaea HOM05D004611 ORTHO05D005794 2.2e-195 687.2 586 63.5
PRCOL_00000926 Prasinoderma coloniale HOM05D004611 ORTHO05D005794 6.8e-181 639.0 1169 38.1
HPP92_010928 Vanilla planifolia HOM05D004611 ORTHO05D005794 5.9e-177 625.9 561 61.3
Solyc01g057840.3 Solanum lycopersicum HOM05D004611 ORTHO05D005794 1.0e-173 615.1 540 62.0
PGSC0003DMG402001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 1.2e-166 591.7 538 61.3
Actinidia14243 Actinidia chinensis HOM05D004611 ORTHO05D005794 8.4e-147 525.8 482 62.0
Peaxi162Scf00126g01512 Petunia axillaris HOM05D004611 ORTHO05D005794 8.7e-144 515.8 538 54.8
HPP92_010927 Vanilla planifolia HOM05D004611 ORTHO05D005794 8.4e-139 499.2 412 63.8
GSVIVG01017631001 Vitis vinifera HOM05D004611 ORTHO05D005794 2.0e-132 478.0 322 75.2
Cpa.g.sc146.72 Carica papaya HOM05D004611 ORTHO05D005794 1.2e-129 468.8 350 70.3
unitig_746.g26902 Utricularia gibba HOM05D004611 ORTHO05D005794 6.5e-115 419.9 468 53.8
GSVIVG01017626001 Vitis vinifera HOM05D004611 ORTHO05D005794 8.2e-110 402.9 361 62.6
GSVIVG01017613001 Vitis vinifera HOM05D004611 ORTHO05D005794 2.2e-107 394.8 379 59.6
MCO13G239 Micromonas commoda HOM05D004611 ORTHO05D005794 8.5e-107 392.9 1202 27.9
SEGI_12646 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 3.6e-105 387.5 536 45.5
arahy.Tifrunner.gnm1.ann1.JPBR4U Arachis hypogaea HOM05D004611 ORTHO05D005794 1.8e-93 348.6 240 76.7
Cfa025106 Carpinus fangiana HOM05D004611 ORTHO05D005794 4.1e-93 347.4 1182 28.7
SEGI_02813 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 9.4e-90 336.3 372 50.0
Oeu046590.2 Olea europaea HOM05D004611 ORTHO05D005794 1.9e-82 312.0 418 49.8
Cre17.g734961 Chlamydomonas reinhardtii HOM05D004611 ORTHO05D005794 5.5e-82 310.5 261 58.6
TAR362G0625 Trochodendron aralioides HOM05D004611 ORTHO05D005794 3.5e-76 291.2 221 69.7
CDE02G2799 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 6.8e-72 276.9 250 61.6
Lsat_1_v5_gn_5_111761 Lactuca sativa HOM05D004611 ORTHO05D029976 2.7e-68 265.0 342 48.5
Cpa.g.sc146.70 Carica papaya HOM05D004611 ORTHO05D005794 2.3e-67 261.9 241 61.4
Lsat_1_v5_gn_3_85221 Lactuca sativa HOM05D004611 ORTHO05D029976 7.2e-66 256.9 342 47.4
Lsat_1_v5_gn_2_109460 Lactuca sativa HOM05D004611 ORTHO05D029976 2.1e-65 255.4 342 46.8
arahy.Tifrunner.gnm1.ann1.PAF7VJ Arachis hypogaea HOM05D004611 ORTHO05D005794 4.7e-65 254.2 149 87.2
Lsat_1_v5_gn_1_27520 Lactuca sativa HOM05D004611 ORTHO05D029976 4.7e-65 254.2 342 47.1
GSVIVG01017633001 Vitis vinifera HOM05D004611 ORTHO05D005794 4.7e-65 254.2 184 70.7
SEGI_18823 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 3.0e-64 251.5 147 84.4
Actinidia07518 Actinidia chinensis HOM05D004611 ORTHO05D005794 2.4e-61 241.9 217 59.9
Actinidia07517 Actinidia chinensis HOM05D004611 ORTHO05D005794 6.6e-51 207.2 106 98.1
arahy.Tifrunner.gnm1.ann1.MSK2EL Arachis hypogaea HOM05D004611 ORTHO05D005794 2.3e-48 198.7 113 87.6
arahy.Tifrunner.gnm1.ann1.631YT7 Arachis hypogaea HOM05D004611 ORTHO05D005794 4.4e-47 194.5 111 87.4
arahy.Tifrunner.gnm1.ann1.N4MQ0H Arachis hypogaea HOM05D004611 ORTHO05D005794 1.3e-46 193.0 113 85.8
arahy.Tifrunner.gnm1.ann1.80REVR Arachis hypogaea HOM05D004611 ORTHO05D005794 2.4e-45 188.7 113 84.1
arahy.Tifrunner.gnm1.ann1.G1FZ3Z Arachis hypogaea HOM05D004611 ORTHO05D005794 2.4e-45 188.7 113 84.1
arahy.Tifrunner.gnm1.ann1.KEPZ3C Arachis hypogaea HOM05D004611 ORTHO05D005794 3.9e-43 181.4 109 85.3
CANSAT35G0087 Cannabis sativa HOM05D004611 ORTHO05D005794 6.6e-43 180.6 170 61.8
SMO356G0537 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 8.6e-43 180.3 581 29.4
arahy.Tifrunner.gnm1.ann1.F9ANIH Arachis hypogaea HOM05D004611 ORTHO05D005794 7.3e-42 177.2 106 86.8
arahy.Tifrunner.gnm1.ann1.LTB099 Arachis hypogaea HOM05D004611 ORTHO05D005794 1.5e-39 169.5 99 86.9
Actinidia25067 Actinidia chinensis HOM05D004611 ORTHO05D005794 9.9e-39 166.8 89 94.4
Atru.chr6.2576 Acer truncatum HOM05D004611 ORTHO05D005794 4.1e-37 161.4 97 80.4
Cpa.g.sc146.71 Carica papaya HOM05D004611 ORTHO05D005794 6.2e-33 147.5 82 87.8
SMO356G0656 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 4.2e-29 134.8 120 58.3
TPR.G40539 Trifolium pratense HOM05D004611 ORTHO05D005794 5.1e-27 127.9 174 47.7
SMO356G0045 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 4.3e-26 124.8 177 39.0
TPR.G31403 Trifolium pratense HOM05D004611 ORTHO05D005794 1.5e-23 116.3 71 83.1
arahy.Tifrunner.gnm1.ann1.0CQZ6Z Arachis hypogaea HOM05D000862 ORTHO05D000003 4.2e-21 108.2 75 73.3
arahy.Tifrunner.gnm1.ann1.R4H24K Arachis hypogaea HOM05D000862 ORTHO05D000003 1.2e-20 106.7 75 72.0
HanXRQChr06g0164931 Helianthus annuus HOM05D004611 ORTHO05D005794 1.2e-20 106.7 73 71.2
COL.COLO4_13521 Corchorus olitorius HOM05D004611 ORTHO05D005794 2.7e-20 105.5 91 64.8
HanXRQChr04g0096671 Helianthus annuus HOM05D004611 ORTHO05D005794 3.0e-19 102.1 102 52.9


User provided reference genes

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