Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G076500 Populus trichocarpa HOM05D004187 ORTHO05D004890 7.4e-112 407.1 195 100.0
QL08p059729 Quercus lobata HOM05D004187 ORTHO05D004890 2.0e-40 169.9 201 43.3
Dinv03045 Davidia involucrata HOM05D004187 ORTHO05D004890 6.4e-39 164.9 180 46.7
Prupe.2G235500 Prunus persica HOM05D004187 ORTHO05D004890 8.4e-39 164.5 192 45.8
RcHm_v2.0_Chr1g0367131 Rosa chinensis HOM05D004187 ORTHO05D004890 1.4e-38 163.7 185 48.6
arahy.Tifrunner.gnm1.ann1.8FXP11 Arachis hypogaea HOM05D004187 ORTHO05D004890 2.1e-37 159.8 125 60.0
Cfa008463 Carpinus fangiana HOM05D004187 ORTHO05D004890 2.1e-37 159.8 121 61.2
Glyma.01G235900 Glycine max HOM05D004187 ORTHO05D004890 2.7e-37 159.5 121 60.3
arahy.Tifrunner.gnm1.ann1.Q6C7EF Arachis hypogaea HOM05D004187 ORTHO05D004890 4.6e-37 158.7 125 59.2
arahy.Tifrunner.gnm1.ann1.Q4QH0F Arachis hypogaea HOM05D004187 ORTHO05D004890 6.0e-37 158.3 125 58.4
CiPaw.02G122700 Carya illinoinensis HOM05D004187 ORTHO05D004890 6.0e-37 158.3 131 56.5
Gorai.011G165600 Gossypium raimondii HOM05D004187 ORTHO05D004890 6.0e-37 158.3 140 52.9
MBI11_g32998_MAGBIO Magnolia biondii HOM05D002650 ORTHO05D002924 6.0e-37 158.3 150 55.3
RcHm_v2.0_Chr4g0407591 Rosa chinensis HOM05D004187 ORTHO05D004890 7.8e-37 157.9 134 54.5
GSVIVG01018017001 Vitis vinifera HOM05D004187 ORTHO05D004890 7.8e-37 157.9 121 59.5
MELO3C006513.2 Cucumis melo HOM05D004187 ORTHO05D004890 1.0e-36 157.5 125 56.8
CsaV3_3G013040 Cucumis sativus L. HOM05D004187 ORTHO05D004890 1.0e-36 157.5 125 56.8
MD16G1197500 Malus domestica HOM05D004187 ORTHO05D004890 1.0e-36 157.5 141 54.6
Haze_11210 Corylus avellana HOM05D004187 ORTHO05D004890 1.3e-36 157.1 121 60.3
Gohir.A10G118400 Gossypium hirsutum HOM05D004187 ORTHO05D004890 1.3e-36 157.1 140 52.9
QL06p001566 Quercus lobata HOM05D004187 ORTHO05D004890 1.3e-36 157.1 121 59.5
Ca_24413_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 1.7e-36 156.8 124 58.1
TWI73G1209 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 1.7e-36 156.8 128 54.7
Sed0024336 Sechium edule HOM05D004187 ORTHO05D004890 2.3e-36 156.4 125 56.0
TAR362G0393 Trochodendron aralioides HOM05D004187 ORTHO05D004890 2.3e-36 156.4 119 63.0
Medtr5g006610 Medicago truncatula HOM05D004187 ORTHO05D004890 3.0e-36 156.0 121 60.3
Aqoxy2G03437 Aquilegia oxysepala HOM05D004187 ORTHO05D004890 3.9e-36 155.6 120 60.8
Haze_17068 Corylus avellana HOM05D004187 ORTHO05D004890 5.1e-36 155.2 214 41.6
Duzib212G0360 Durio zibethinus HOM05D004187 ORTHO05D004890 5.1e-36 155.2 140 52.9
Gohir.D10G148300 Gossypium hirsutum HOM05D004187 ORTHO05D004890 5.1e-36 155.2 136 54.4
Cfa001472 Carpinus fangiana HOM05D004187 ORTHO05D004890 6.6e-36 154.8 203 41.4
ClCG05G004990 Citrullus lanatus HOM05D004187 ORTHO05D004890 6.6e-36 154.8 125 56.0
Thecc.04G235800 Theobroma cacao HOM05D002650 ORTHO05D002924 6.6e-36 154.8 125 56.0
VMungo0251G0090 Vigna mungo HOM05D004187 ORTHO05D004890 1.1e-35 154.1 131 55.7
Nn1g02390 Nelumbo nucifera HOM05D004187 ORTHO05D004890 1.5e-35 153.7 119 60.5
CANSAT78G1519 Cannabis sativa HOM05D004187 ORTHO05D004890 1.9e-35 153.3 128 54.7
TWI53G1349 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 1.9e-35 153.3 137 54.7
arahy.Tifrunner.gnm1.ann1.LSRC2Y Arachis hypogaea HOM05D004187 ORTHO05D004890 2.5e-35 152.9 125 56.8
Medtr5g006600 Medicago truncatula HOM05D004187 ORTHO05D004890 3.3e-35 152.5 125 56.0
TPR.G37866 Trifolium pratense HOM05D004187 ORTHO05D004890 3.3e-35 152.5 125 56.0
Prupe.1G018500 Prunus persica HOM05D004187 ORTHO05D004890 4.3e-35 152.1 167 46.1
Dinv25939 Davidia involucrata HOM05D004187 ORTHO05D004890 5.6e-35 151.8 128 56.2
FvH4_4g00760 Fragaria vesca HOM05D004187 ORTHO05D004890 7.3e-35 151.4 136 51.5
FAN12G2319 Fragaria x ananassa HOM05D004187 ORTHO05D004890 7.3e-35 151.4 136 51.5
Phvul.002G043400 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 7.3e-35 151.4 133 55.6
Lalb_Chr05g0211101 Lupinus albus HOM05D004187 ORTHO05D004890 9.6e-35 151.0 121 58.7
PSO210G5857 Papaver somniferum HOM05D004187 ORTHO05D004890 9.6e-35 151.0 117 60.7
Rhsim02G0027200 Rhododendron simsii HOM05D004187 ORTHO05D004890 9.6e-35 151.0 138 50.0
PSO170G4884 Papaver somniferum HOM05D004187 ORTHO05D004890 1.6e-34 150.2 117 60.7
TAR633G0827 Trochodendron aralioides HOM05D004187 ORTHO05D004890 2.1e-34 149.8 123 58.5
Psat2g190440 Pisum sativum HOM05D004187 ORTHO05D004890 2.8e-34 149.4 125 54.4
Rhsim04G0199500 Rhododendron simsii HOM05D004187 ORTHO05D004890 2.8e-34 149.4 160 46.9
FAN22G0369 Fragaria x ananassa HOM05D004187 ORTHO05D004890 3.6e-34 149.1 128 53.9
COL.COLO4_15044 Corchorus olitorius HOM05D004187 ORTHO05D004890 6.2e-34 148.3 216 42.1
FAN18G3642 Fragaria x ananassa HOM05D004187 ORTHO05D004890 6.2e-34 148.3 158 46.2
FvH4_5g32450 Fragaria vesca HOM05D004187 ORTHO05D004890 8.1e-34 147.9 158 46.2
FAN13G2545 Fragaria x ananassa HOM05D004187 ORTHO05D004890 8.1e-34 147.9 158 46.8
Sed0012407 Sechium edule HOM05D004187 ORTHO05D004890 8.1e-34 147.9 120 56.7
COL.COLO4_21526 Corchorus olitorius HOM05D004187 ORTHO05D004890 1.8e-33 146.7 113 58.4
vmacro15360 Vaccinium macrocarpon HOM05D004187 ORTHO05D004890 1.8e-33 146.7 119 56.3
TPR.G37887 Trifolium pratense HOM05D004187 ORTHO05D004890 2.4e-33 146.4 142 51.4
Actinidia40129 Actinidia chinensis HOM05D004187 ORTHO05D004890 3.1e-33 146.0 146 46.6
AUR62008916 Chenopodium quinoa HOM05D004187 ORTHO05D004890 5.2e-33 145.2 124 52.4
Glyma.11G007300 Glycine max HOM05D004187 ORTHO05D004890 5.2e-33 145.2 113 59.3
CSS0034976 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 6.9e-33 144.8 134 49.3
AL3G36980 Arabidopsis lyrata HOM05D004187 ORTHO05D004890 9.0e-33 144.4 140 50.7
Ciclev10005993m.g Citrus clementina HOM05D004187 ORTHO05D004890 9.0e-33 144.4 143 49.7
Carub.0003s2284 Capsella rubella HOM05D004187 ORTHO05D004890 1.2e-32 144.1 128 52.3
THA.LOC104803042 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 1.2e-32 144.1 170 44.1
Thhalv10021679m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 1.5e-32 143.7 131 48.9
FAN08G0419 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.5e-32 143.7 121 54.5
CSS0045006 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 2.0e-32 143.3 121 53.7
Manes.15G031200 Manihot esculenta HOM05D004187 ORTHO05D004890 2.0e-32 143.3 119 54.6
Nitab4.5_0000050g0260 Nicotiana tabacum HOM05D004187 ORTHO05D004890 2.6e-32 142.9 121 52.9
CARHR098560 Cardamine hirsuta HOM05D004187 ORTHO05D004890 3.4e-32 142.5 131 50.4
Thhalv10017318m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 5.8e-32 141.7 124 50.8
Psat2g190480 Pisum sativum HOM05D004187 ORTHO05D004890 7.6e-32 141.4 125 51.2
PGR129G0008 Punica granatum HOM05D004187 ORTHO05D004890 9.9e-32 141.0 158 48.7
PGR142G1722 Punica granatum HOM05D004187 ORTHO05D004890 9.9e-32 141.0 158 48.7
LjContig00408g0013113 Lotus japonicus HOM05D004187 ORTHO05D004890 1.3e-31 140.6 121 54.5
Potri.008G155800 Populus trichocarpa HOM05D004187 ORTHO05D004890 1.3e-31 140.6 120 52.5
PGSC0003DMG401028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.3e-31 140.6 166 42.2
Ca_24412_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 2.2e-31 139.8 125 52.0
Ca_30960_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 2.2e-31 139.8 125 52.0
Sabra08G0118600 Salix brachista HOM05D004187 ORTHO05D004890 2.2e-31 139.8 132 50.0
Sc19g0004030 Simmondsia chinensis HOM05D004187 ORTHO05D004890 2.2e-31 139.8 119 54.6
Peaxi162Scf00092g00016 Petunia axillaris HOM05D004187 ORTHO05D004890 2.9e-31 139.4 119 51.3
Rhsim03G0003800 Rhododendron simsii HOM05D004187 ORTHO05D004890 2.9e-31 139.4 184 39.7
Sopen10g014270 Solanum pennellii HOM05D004187 ORTHO05D004890 2.9e-31 139.4 142 46.5
Actinidia32414 Actinidia chinensis HOM05D004187 ORTHO05D004890 4.9e-31 138.7 191 40.3
AT3G22680 Arabidopsis thaliana HOM05D004187 ORTHO05D004890 4.9e-31 138.7 128 50.8
AUR62001090 Chenopodium quinoa HOM05D004187 ORTHO05D004890 6.4e-31 138.3 178 42.7
Cc10_g08560 Coffea canephora HOM05D004187 ORTHO05D004890 1.1e-30 137.5 117 55.6
Nitab4.5_0001792g0010 Nicotiana tabacum HOM05D004187 ORTHO05D004890 1.1e-30 137.5 113 54.0
Atru.chr4.2392 Acer truncatum HOM05D004187 ORTHO05D004890 1.4e-30 137.1 125 48.0
Eucgr.H03428 Eucalyptus grandis HOM05D004187 ORTHO05D004890 1.4e-30 137.1 132 50.8
Manes.03G175300 Manihot esculenta HOM05D004187 ORTHO05D004890 1.9e-30 136.7 117 53.0
Atru.chr4.2417 Acer truncatum HOM05D004187 ORTHO05D004890 3.2e-30 136.0 125 48.8
ECA233G0410 Erigeron canadensis HOM05D004187 ORTHO05D004890 3.2e-30 136.0 141 48.2
ECA247G0434 Erigeron canadensis HOM05D000045 ORTHO05D004890 3.2e-30 136.0 164 43.3
ECA247G1582 Erigeron canadensis HOM05D004187 ORTHO05D004890 5.4e-30 135.2 165 41.2
Peaxi162Scf00245g00106 Petunia axillaris HOM05D004187 ORTHO05D004890 5.4e-30 135.2 152 44.1
Manes.12G002301 Manihot esculenta HOM05D004187 ORTHO05D004890 7.1e-30 134.8 110 57.3
A03p42920 Brassica napus HOM05D004187 ORTHO05D004890 9.3e-30 134.4 124 52.4
BraA03t13436Z Brassica rapa HOM05D004187 ORTHO05D004890 9.3e-30 134.4 124 52.4
Lj3A731T58 Lonicera japonica HOM05D004187 ORTHO05D004890 9.3e-30 134.4 119 52.1
MSTRG.4047 Avicennia marina HOM05D004187 ORTHO05D004890 1.2e-29 134.0 119 52.9
Hma1.2p1_0207F.1_g088010 Hydrangea macrophylla HOM05D004187 ORTHO05D004890 1.6e-29 133.7 139 48.2
ATR0665G390 Amborella trichopoda HOM05D004187 ORTHO05D004890 2.1e-29 133.3 123 50.4
BcaC05g28028 Brassica carinata HOM05D004187 ORTHO05D004890 2.1e-29 133.3 124 51.6
C05p40440 Brassica napus HOM05D004187 ORTHO05D004890 2.1e-29 133.3 124 51.6
BolC5t32785H Brassica oleracea HOM05D004187 ORTHO05D004890 2.1e-29 133.3 124 51.6
CDE07G0031 Ceratophyllum demersum HOM05D004187 ORTHO05D004890 2.1e-29 133.3 119 50.4
Atru.chr1.2916 Acer truncatum HOM05D004187 ORTHO05D004890 2.7e-29 132.9 114 50.0
DCAR_031726 Daucus carota HOM05D004187 ORTHO05D004890 2.7e-29 132.9 143 45.5
Sp3g20440 Schrenkiella parvula HOM05D004187 ORTHO05D004890 2.7e-29 132.9 131 47.3
BcaC01g03429 Brassica carinata HOM05D004187 ORTHO05D004890 3.5e-29 132.5 128 50.0
BcaC01g03430 Brassica carinata HOM05D004187 ORTHO05D004890 3.5e-29 132.5 128 50.0
C03p52670 Brassica napus HOM05D004187 ORTHO05D004890 3.5e-29 132.5 128 50.0
BolC3t17535H Brassica oleracea HOM05D004187 ORTHO05D004890 3.5e-29 132.5 128 50.0
Solyc09g082480.2 Solanum lycopersicum HOM05D004187 ORTHO05D004890 4.6e-29 132.1 120 50.0
BraA05t21487Z Brassica rapa HOM05D004187 ORTHO05D004890 7.8e-29 131.3 124 51.6
Nitab4.5_0000085g0360 Nicotiana tabacum HOM05D004187 ORTHO05D004890 7.8e-29 131.3 142 43.7
BcaB06g26379 Brassica carinata HOM05D004187 ORTHO05D004890 1.3e-28 130.6 131 45.8
A05p26020 Brassica napus HOM05D004187 ORTHO05D004890 1.7e-28 130.2 124 51.6
PGSC0003DMG402028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 3.0e-28 129.4 113 51.3
THA.LOC104808564 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 3.0e-28 129.4 119 51.3
CAN.G1402.3 Capsicum annuum HOM05D004187 ORTHO05D004890 3.9e-28 129.0 184 37.0
Nitab4.5_0001547g0030 Nicotiana tabacum HOM05D004187 ORTHO05D004890 3.9e-28 129.0 178 39.3
Solyc10g045190.3 Solanum lycopersicum HOM05D004187 ORTHO05D004890 3.9e-28 129.0 113 51.3
Sopen09g031340 Solanum pennellii HOM05D004187 ORTHO05D004890 1.1e-27 127.5 120 48.3
SalBow2G2347 Salvia bowleyana HOM05D004187 ORTHO05D004890 3.3e-27 125.9 119 50.4
PGSC0003DMG400039476 Solanum tuberosum HOM05D004187 ORTHO05D004890 3.3e-27 125.9 113 48.7
Aa31LG3G2350 Aethionema arabicum HOM05D004187 ORTHO05D004890 5.6e-27 125.2 136 48.5
Lj1g0019332 Lotus japonicus HOM05D004187 ORTHO05D004890 7.3e-27 124.8 194 40.2
HanXRQChr08g0219391 Helianthus annuus HOM05D004187 ORTHO05D004890 9.6e-27 124.4 167 40.1
Lj1g0009372 Lotus japonicus HOM05D004187 ORTHO05D004890 2.8e-26 122.9 194 39.2
Lj1g0011366 Lotus japonicus HOM05D004187 ORTHO05D004890 2.8e-26 122.9 195 39.5
SalBow2G0844 Salvia bowleyana HOM05D004187 ORTHO05D004890 2.8e-26 122.9 119 49.6
Duzib114G0324 Durio zibethinus HOM05D004187 ORTHO05D004890 3.6e-26 122.5 111 54.1
Atru.chr1.2920 Acer truncatum HOM05D004187 ORTHO05D004890 4.8e-26 122.1 149 42.3
VMungo1383G1788 Vigna mungo HOM05D004187 ORTHO05D004890 4.8e-26 122.1 193 37.8
Migut.G00365 Erythranthe guttata HOM05D004187 ORTHO05D004890 2.4e-25 119.8 134 44.8
Thhalv10029384m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 4.0e-25 119.0 127 44.1
Lsat_1_v5_gn_8_21341 Lactuca sativa HOM05D004187 ORTHO05D004890 5.3e-25 118.6 148 41.2
HPP92_009615 Vanilla planifolia HOM05D004187 ORTHO05D004890 5.3e-25 118.6 146 39.7
AUR62001087 Chenopodium quinoa HOM05D004187 ORTHO05D004890 4.5e-24 115.5 90 55.6
SGA_v2.0_scaffold191G40487 Striga asiatica HOM05D004187 ORTHO05D004890 4.5e-24 115.5 119 48.7
Sopen09g031300 Solanum pennellii HOM05D004187 ORTHO05D004890 6.4e-23 111.7 113 46.9
Atru.chr7.913 Acer truncatum HOM05D004187 ORTHO05D004890 8.4e-23 111.3 109 46.8
PGSC0003DMG400039782 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.4e-22 109.8 97 48.5
PGSC0003DMG400040737 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.4e-22 109.8 108 45.4
Thecc.10G042200 Theobroma cacao HOM05D009017 ORTHO05D010462 9.3e-22 107.8 180 38.3
Lalb_Chr10g0091621 Lupinus albus HOM05D004187 ORTHO05D004890 2.7e-21 106.3 127 41.7
Sopen09g031290 Solanum pennellii HOM05D004187 ORTHO05D004890 1.3e-20 104.0 97 50.5
Ca_12246_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 3.0e-20 102.8 108 45.4
Phvul.008G010500 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 5.1e-20 102.1 111 43.2
PGSC0003DMG400032269 Solanum tuberosum HOM05D004187 ORTHO05D004890 8.7e-20 101.3 82 53.7
unitig_22.g6822 Utricularia gibba HOM05D004187 ORTHO05D004890 1.1e-19 100.9 133 39.1
Solyc09g082430.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 2.1e-18 96.7 97 50.5
Solyc09g082420.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 4.8e-18 95.5 90 52.2
Nn6g35138 Nelumbo nucifera HOM05D004187 ORTHO05D004890 6.9e-17 91.7 73 60.3
Gohir.A10G219300 Gossypium hirsutum HOM05D009017 ORTHO05D010462 2.0e-16 90.1 179 34.6
PGSC0003DMG400013771 Solanum tuberosum HOM05D004187 ORTHO05D004890 6.4e-15 85.1 92 42.4
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 2.7e-13 79.7 125 40.8
Solyc09g082440.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 4.6e-13 79.0 62 56.5
PGSC0003DMG400032265 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.0e-12 77.8 66 50.0
Lalb_Chr16g0376451 Lupinus albus HOM05D004187 ORTHO05D004890 4.0e-09 65.9 50 58.0
Sabra10G0059200 Salix brachista HOM05D004187 ORTHO05D004890 1.3e-07 60.8 126 31.0


User provided reference genes

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