Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.007G139300 Populus trichocarpa HOM05D004354 ORTHO05D005409 0.0e+00 1191.0 573 100.0
Potri.017G012600 Populus trichocarpa HOM05D004354 ORTHO05D005409 3.9e-312 1074.3 574 90.4
Manes.13G144800 Manihot esculenta HOM05D004354 ORTHO05D005409 5.8e-298 1026.9 571 87.2
Thecc.02G182400 Theobroma cacao HOM05D004354 ORTHO05D005409 3.5e-295 1017.7 574 85.7
Prupe.3G139300 Prunus persica HOM05D004354 ORTHO05D005409 2.5e-293 1011.5 569 85.6
COL.COLO4_05947 Corchorus olitorius HOM05D004354 ORTHO05D005409 9.6e-293 1009.6 575 85.6
Gohir.A03G155600 Gossypium hirsutum HOM05D004354 ORTHO05D005409 3.6e-292 1007.7 574 85.7
Gorai.005G200400 Gossypium raimondii HOM05D004354 ORTHO05D005409 1.4e-291 1005.7 574 85.5
Cfa014637 Carpinus fangiana HOM05D004354 ORTHO05D005409 3.1e-291 1004.6 561 85.9
Dinv04814 Davidia involucrata HOM05D004354 ORTHO05D005409 6.9e-291 1003.4 569 84.9
Gohir.D02G178700 Gossypium hirsutum HOM05D004354 ORTHO05D005409 9.0e-291 1003.0 574 85.4
QL08p039658 Quercus lobata HOM05D004354 ORTHO05D005409 2.0e-290 1001.9 577 84.6
Ciclev10014745m.g Citrus clementina HOM05D004354 ORTHO05D005409 3.8e-289 997.7 563 86.5
CiPaw.03G179000 Carya illinoinensis HOM05D004354 ORTHO05D005409 1.0e-286 989.6 558 84.9
GSVIVG01020571001 Vitis vinifera HOM05D004354 ORTHO05D005409 1.1e-285 986.1 571 83.0
Dinv13394 Davidia involucrata HOM05D004354 ORTHO05D005409 4.3e-285 984.2 570 82.8
RcHm_v2.0_Chr2g0127681 Rosa chinensis HOM05D004354 ORTHO05D005409 5.6e-285 983.8 562 84.2
CSS0014582 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 2.8e-284 981.5 555 83.8
MD09G1244500 Malus domestica HOM05D004354 ORTHO05D005409 3.1e-283 978.0 561 83.4
Cc05_g07440 Coffea canephora HOM05D004354 ORTHO05D005409 5.3e-283 977.2 547 83.7
Rhsim06G0139400 Rhododendron simsii HOM05D004354 ORTHO05D005409 3.4e-282 974.5 544 84.2
FvH4_6g26490 Fragaria vesca HOM05D004354 ORTHO05D005409 5.8e-282 973.8 534 86.1
FAN05G5576 Fragaria x ananassa HOM05D004354 ORTHO05D005409 8.4e-281 969.9 538 85.7
MD17G1236500 Malus domestica HOM05D004354 ORTHO05D005409 3.2e-280 968.0 573 81.7
TWI23G0225 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 2.7e-279 964.9 557 83.3
Hma1.2p1_0002F.1_g002080 Hydrangea macrophylla HOM05D004354 ORTHO05D005409 5.1e-278 960.7 571 81.3
Phvul.005G102100 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 1.1e-277 959.5 565 81.8
PGSC0003DMG400032816 Solanum tuberosum HOM05D004354 ORTHO05D005409 1.9e-277 958.7 549 82.3
CANSAT64G2319 Cannabis sativa HOM05D004354 ORTHO05D005409 2.5e-277 958.4 582 79.9
PGR142G0821 Punica granatum HOM05D004354 ORTHO05D005409 2.5e-277 958.4 558 81.5
VMungo1080G0203 Vigna mungo HOM05D004354 ORTHO05D005409 3.3e-277 958.0 557 82.0
Sopen07g027820 Solanum pennellii HOM05D004354 ORTHO05D005409 7.4e-277 956.8 548 82.1
Sopen12g001470 Solanum pennellii HOM05D004354 ORTHO05D005409 7.4e-277 956.8 548 82.1
FAN02G3736 Fragaria x ananassa HOM05D004354 ORTHO05D005409 9.6e-277 956.4 534 84.6
CSS0000262 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 1.3e-276 956.1 555 82.0
Solyc07g053850.3 Solanum lycopersicum HOM05D004354 ORTHO05D005409 8.1e-276 953.4 548 81.8
arahy.Tifrunner.gnm1.ann1.5TEV2E Arachis hypogaea HOM05D004354 ORTHO05D005409 1.4e-275 952.6 588 77.6
Actinidia11091 Actinidia chinensis HOM05D004354 ORTHO05D005409 1.8e-275 952.2 524 85.3
Solyc12g005470.2 Solanum lycopersicum HOM05D004354 ORTHO05D005409 1.8e-275 952.2 548 82.1
Glyma.13G295600 Glycine max HOM05D004354 ORTHO05D005409 5.8e-274 947.2 558 81.5
Eucgr.K01043 Eucalyptus grandis HOM05D004354 ORTHO05D005409 1.0e-273 946.4 545 81.8
arahy.Tifrunner.gnm1.ann1.SG72Z3 Arachis hypogaea HOM05D004354 ORTHO05D005409 2.2e-273 945.3 604 75.5
Lj1A714G27 Lonicera japonica HOM05D004354 ORTHO05D005409 4.9e-273 944.1 548 81.8
Glyma.12G205300 Glycine max HOM05D004354 ORTHO05D005409 1.4e-272 942.6 558 80.8
Lsat_1_v5_gn_4_66820 Lactuca sativa HOM05D004354 ORTHO05D005409 1.4e-272 942.6 545 80.7
Glyma.06G290800 Glycine max HOM05D004354 ORTHO05D005409 3.2e-272 941.4 571 78.3
MSTRG.6802 Avicennia marina HOM05D004354 ORTHO05D005409 7.1e-272 940.3 545 80.7
MELO3C013588.2 Cucumis melo HOM05D004354 ORTHO05D005409 9.3e-272 939.9 546 81.9
Lj3g0011593 Lotus japonicus HOM05D004354 ORTHO05D005409 9.3e-272 939.9 548 81.6
CsaV3_6G015220 Cucumis sativus L. HOM05D004354 ORTHO05D005409 3.9e-270 934.5 537 82.5
DCAR_009753 Daucus carota HOM05D004354 ORTHO05D005409 3.9e-270 934.5 547 80.8
Glyma.12G116100 Glycine max HOM05D004354 ORTHO05D005409 3.9e-270 934.5 571 78.1
Sc21g0003070 Simmondsia chinensis HOM05D004354 ORTHO05D005409 6.7e-270 933.7 554 79.8
Sed0026522 Sechium edule HOM05D004354 ORTHO05D005409 1.5e-269 932.6 572 79.2
TWI59G0686 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 1.5e-269 932.6 572 79.7
Ca_18937_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 1.9e-269 932.2 574 76.8
Lj3g0017215 Lotus japonicus HOM05D004354 ORTHO05D005409 2.5e-269 931.8 574 77.5
Lalb_Chr19g0135191 Lupinus albus HOM05D004354 ORTHO05D005409 9.6e-269 929.9 571 77.2
Phvul.011G119730 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 9.6e-269 929.9 571 77.9
Medtr4g078525 Medicago truncatula HOM05D004354 ORTHO05D005409 6.3e-268 927.2 574 76.8
Oeu036067.1 Olea europaea HOM05D004354 ORTHO05D005409 3.4e-266 921.4 548 78.5
TPR.G2846 Trifolium pratense HOM05D004354 ORTHO05D005409 7.6e-266 920.2 585 75.4
THA.LOC104804057 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 1.3e-265 919.5 555 78.4
Aqoxy1G02375 Aquilegia oxysepala HOM05D004354 ORTHO05D005409 1.7e-265 919.1 543 80.1
TAR626G1453 Trochodendron aralioides HOM05D004354 ORTHO05D005409 7.2e-264 913.7 529 82.6
Aa31LG8G17560 Aethionema arabicum HOM05D004354 ORTHO05D005409 9.3e-264 913.3 559 77.1
Cpa.g.sc83.63 Carica papaya HOM05D004354 ORTHO05D005409 1.2e-263 912.9 583 78.0
Psat7g168720 Pisum sativum HOM05D004354 ORTHO05D005409 3.6e-263 911.4 546 78.6
EL10Ac9g20792 Beta vulgaris HOM05D004354 ORTHO05D005409 3.0e-262 908.3 517 82.2
Carub.0007s1237 Capsella rubella HOM05D004354 ORTHO05D005409 3.9e-262 907.9 548 77.7
Nitab4.5_0001184g0100 Nicotiana tabacum HOM05D004354 ORTHO05D005409 5.1e-262 907.5 548 79.4
vmacro12326 Vaccinium macrocarpon HOM05D004354 ORTHO05D005409 5.1e-262 907.5 533 80.9
HanXRQChr05g0143301 Helianthus annuus HOM05D004354 ORTHO05D005409 8.7e-262 906.7 545 78.5
arahy.Tifrunner.gnm1.ann1.7S1AZB Arachis hypogaea HOM05D004354 ORTHO05D005409 1.1e-261 906.4 570 77.4
Haze_13201 Corylus avellana HOM05D004354 ORTHO05D005409 1.5e-261 906.0 587 76.7
AL3G53730 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 2.5e-261 905.2 567 76.2
Thhalv10002192m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 3.3e-261 904.8 545 77.6
AT4G28370 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 9.7e-261 903.3 556 76.4
PSO541G1897 Papaver somniferum HOM05D004354 ORTHO05D005409 9.7e-261 903.3 542 77.7
Ca_09445_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 1.6e-260 902.5 562 76.7
PSO675G5152 Papaver somniferum HOM05D004354 ORTHO05D005409 1.6e-260 902.5 542 77.5
arahy.Tifrunner.gnm1.ann1.6AZK3P Arachis hypogaea HOM05D004354 ORTHO05D005409 2.2e-260 902.1 568 77.3
Aa31LG2G22230 Aethionema arabicum HOM05D004354 ORTHO05D005409 2.8e-260 901.7 561 77.5
AT2G20650 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 2.8e-260 901.7 553 77.0
Thhalv10024798m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 2.8e-260 901.7 548 77.7
CARHR236110 Cardamine hirsuta HOM05D004354 ORTHO05D005409 3.7e-260 901.4 557 77.2
Lalb_Chr03g0029541 Lupinus albus HOM05D004354 ORTHO05D005409 3.7e-260 901.4 574 74.9
Carub.0003s3517 Capsella rubella HOM05D004354 ORTHO05D005409 1.2e-258 896.3 555 76.4
ECA234G2175 Erigeron canadensis HOM05D004354 ORTHO05D005409 2.6e-258 895.2 534 77.9
Sp3g33900 Schrenkiella parvula HOM05D004354 ORTHO05D005409 1.7e-257 892.5 553 75.9
FAN14G3021 Fragaria x ananassa HOM05D004354 ORTHO05D005409 1.6e-255 885.9 510 83.5
AL7G24220 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 3.6e-255 884.8 548 75.7
BraA07t27805Z Brassica rapa HOM05D004354 ORTHO05D005409 4.4e-253 877.9 553 76.3
BcaC06g36756 Brassica carinata HOM05D004354 ORTHO05D005409 5.7e-253 877.5 553 75.8
C07p00280 Brassica napus HOM05D004354 ORTHO05D005409 5.7e-253 877.5 553 75.9
BolC7t40478H Brassica oleracea HOM05D004354 ORTHO05D005409 5.7e-253 877.5 553 75.8
BcaB03g12570 Brassica carinata HOM05D004354 ORTHO05D005409 1.1e-251 873.2 557 75.4
BcaB03g16858 Brassica carinata HOM05D004354 ORTHO05D005409 1.4e-251 872.8 551 75.9
Peaxi162Scf00008g00611 Petunia axillaris HOM05D004354 ORTHO05D005409 1.8e-251 872.5 560 75.2
Nn1g06483 Nelumbo nucifera HOM05D004354 ORTHO05D005409 2.4e-251 872.1 508 81.5
Migut.M00279 Erythranthe guttata HOM05D004354 ORTHO05D005409 9.1e-251 870.2 548 73.2
Hund01030 Selenicereus undatus HOM05D004354 ORTHO05D005409 1.2e-250 869.8 558 74.6
FAN09G2589 Fragaria x ananassa HOM05D004354 ORTHO05D005409 2.0e-250 869.0 520 81.7
Lalb_Chr01g0005151 Lupinus albus HOM05D004354 ORTHO05D005409 2.0e-250 869.0 550 75.3
BraA08t33968Z Brassica rapa HOM05D004354 ORTHO05D005409 2.6e-250 868.6 556 75.4
BcaC07g38328 Brassica carinata HOM05D004354 ORTHO05D005409 1.3e-249 866.3 556 75.2
C08p10830 Brassica napus HOM05D004354 ORTHO05D005409 1.3e-249 866.3 556 75.2
BolC8t48758H Brassica oleracea HOM05D004354 ORTHO05D005409 2.2e-249 865.5 556 75.0
A08p20090 Brassica napus HOM05D004354 ORTHO05D005409 2.9e-249 865.1 556 75.2
THA.LOC104824696 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 1.9e-248 862.4 559 74.6
MBI18_g19626_MAGBIO Magnolia biondii HOM05D004354 ORTHO05D005409 7.2e-248 860.5 560 74.8
A07p00120 Brassica napus HOM05D004354 ORTHO05D005409 2.8e-244 848.6 544 75.2
CARHR111300 Cardamine hirsuta HOM05D004354 ORTHO05D005409 2.0e-242 842.4 518 76.8
Sed0007610 Sechium edule HOM05D004354 ORTHO05D005409 4.2e-240 834.7 495 80.0
PGSC0003DMG400013734 Solanum tuberosum HOM05D004354 ORTHO05D005409 2.8e-236 822.0 544 74.6
Sp7g26330 Schrenkiella parvula HOM05D004354 ORTHO05D005409 2.7e-234 815.5 548 72.3
ATR0763G074 Amborella trichopoda HOM05D004354 ORTHO05D005409 3.5e-234 815.1 517 74.7
ClCG02G017760 Citrullus lanatus HOM05D004354 ORTHO05D005409 1.2e-231 806.6 526 75.1
Peaxi162Scf01415g00030 Petunia axillaris HOM05D004354 ORTHO05D005409 1.6e-231 806.2 532 72.7
Nitab4.5_0000638g0120 Nicotiana tabacum HOM05D004354 ORTHO05D005409 1.2e-229 800.0 514 74.7
Nitab4.5_0006194g0010 Nicotiana tabacum HOM05D004354 ORTHO05D005409 4.7e-223 778.1 548 70.3
SGA_v2.0_scaffold70G23519 Striga asiatica HOM05D004354 ORTHO05D005409 6.1e-223 777.7 563 67.3
unitig_22.g5828 Utricularia gibba HOM05D004354 ORTHO05D005409 1.1e-216 756.9 550 67.3
Nitab4.5_0001752g0070 Nicotiana tabacum HOM05D004354 ORTHO05D005409 8.3e-212 740.7 477 74.8
Pp3c18_8870 Physcomitrium patens HOM05D004354 ORTHO05D005409 8.1e-199 697.6 582 60.8
Pp3c21_16510 Physcomitrium patens HOM05D004354 ORTHO05D005409 2.3e-198 696.0 565 62.7
Mapoly0093s0076 Marchantia polymorpha HOM05D004354 ORTHO05D005409 8.3e-196 687.6 559 61.7
Zm00001eb322160 Zea mays HOM05D004354 ORTHO05D005409 6.6e-193 677.9 416 78.6
SMO351G0175 Selaginella moellendorffii HOM05D004354 ORTHO05D005409 1.1e-192 677.2 544 62.1
Actinidia11016 Actinidia chinensis HOM05D004354 ORTHO05D005409 3.5e-154 549.3 339 80.2
CDE05G0895 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 2.7e-138 496.5 278 82.7
TAR627G0070 Trochodendron aralioides HOM05D004354 ORTHO05D005409 1.8e-137 493.8 320 75.6
AUR62033734 Chenopodium quinoa HOM05D004354 ORTHO05D005409 2.2e-135 486.9 355 68.5
Atru.chr6.2897 Acer truncatum HOM05D004354 ORTHO05D005409 2.5e-131 473.4 263 88.2
HPP92_012418 Vanilla planifolia HOM05D004354 ORTHO05D005409 4.8e-127 459.1 328 69.5
CBR_g36920 Chara braunii HOM05D004354 ORTHO05D005409 1.6e-122 444.1 565 46.9
AUR62033735 Chenopodium quinoa HOM05D004354 ORTHO05D005409 6.8e-113 412.1 294 69.7
SEGI_11328 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 1.4e-102 377.9 217 75.1
AUR62038896 Chenopodium quinoa HOM05D004354 ORTHO05D005409 3.3e-99 366.7 217 81.1
SGA_v2.0_scaffold34G13945 Striga asiatica HOM05D004354 ORTHO05D005409 5.2e-97 359.4 290 61.0
Os07g0501900 Oryza sativa ssp. japonica HOM05D004354 ORTHO05D005409 1.7e-95 354.4 279 63.1
AUR62038895 Chenopodium quinoa HOM05D004354 ORTHO05D005409 8.9e-89 332.0 227 73.6
PRCOL_00005121 Prasinoderma coloniale HOM05D000722 ORTHO05D000590 1.7e-79 301.2 577 33.1
SGA_v2.0_scaffold4316G54468 Striga asiatica HOM05D004354 ORTHO05D005409 1.6e-77 294.7 198 71.7
CDE05G0163 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 3.8e-71 273.5 201 66.7
SEGI_25482 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 9.9e-64 248.8 145 75.2
Cre08.g381900 Chlamydomonas reinhardtii HOM05D004354 ORTHO05D005409 4.8e-58 229.9 457 31.1
MCO03G390 Micromonas commoda HOM05D004354 ORTHO05D005409 1.2e-53 215.3 228 48.2
Atru.chr6.2898 Acer truncatum HOM05D004354 ORTHO05D005409 5.6e-51 206.5 129 76.7
CDE05G2312 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 1.1e-33 149.1 124 54.8
LjContig00564g0000671 Lotus japonicus HOM05D000084 ORTHO05D000363 2.4e-33 147.9 103 67.0
arahy.Tifrunner.gnm1.ann1.56HDLZ Arachis hypogaea HOM05D004354 ORTHO05D005409 4.5e-32 143.7 100 68.0
AUR62038894 Chenopodium quinoa HOM05D004354 ORTHO05D005409 2.9e-31 141.0 111 59.5
SEGI_31944 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 1.1e-30 139.0 106 60.4
TPR.G10974 Trifolium pratense HOM05D004354 ORTHO05D005409 1.5e-27 128.6 173 44.5
SGA_v2.0_scaffold70G23386 Striga asiatica HOM05D004354 ORTHO05D005409 1.0e-23 115.9 121 52.9
TAR627G0937 Trochodendron aralioides HOM05D004354 ORTHO05D005409 1.6e-21 108.6 54 83.3
Nn1g04142 Nelumbo nucifera HOM05D004354 ORTHO05D005409 7.7e-16 89.7 57 70.2
Glyma.14G107350 Glycine max HOM05D004354 ORTHO05D005409 2.9e-15 87.8 66 60.6
Ciclev10013591m.g Citrus clementina HOM05D004354 ORTHO05D005409 2.0e-11 75.1 43 79.1
Potri.001G400600 Populus trichocarpa HOM05D004354 ORTHO05D001065 4.5e-08 63.9 63 41.3
Cfa022079 Carpinus fangiana HOM05D004354 ORTHO05D124722 5.0e-07 60.5 72 37.5
PGSC0003DMG400000359 Solanum tuberosum HOM05D000634 ORTHO05D000517 6.5e-07 60.1 64 37.5
Sopen11g006440 Solanum pennellii HOM05D000082 ORTHO05D000038 1.1e-06 59.3 119 30.3
FvH4_1g03410 Fragaria vesca HOM05D012452 ORTHO05D017950 1.5e-06 58.9 56 39.3
FAN19G1771 Fragaria x ananassa HOM05D012452 ORTHO05D017950 1.5e-06 58.9 56 39.3
FvH4_1g03372 Fragaria vesca HOM05D012452 ORTHO05D017950 2.5e-06 58.2 56 39.3
FAN23G2234 Fragaria x ananassa HOM05D012452 ORTHO05D017950 2.5e-06 58.2 56 39.3
FAN28G2875 Fragaria x ananassa HOM05D012452 ORTHO05D017950 2.5e-06 58.2 56 39.3
Nn1g06293 Nelumbo nucifera HOM05D000086 ORTHO05D005495 2.5e-06 58.2 56 39.3
Solyc11g011570.1 Solanum lycopersicum HOM05D000082 ORTHO05D000038 5.5e-06 57.0 117 29.9
FAN08G0929 Fragaria x ananassa HOM05D007878 ORTHO05D010022 7.2e-06 56.6 60 36.7
Solyc12g008480.3 Solanum lycopersicum HOM05D000082 ORTHO05D000038 7.2e-06 56.6 64 37.5
CsaV3_5G032780 Cucumis sativus L. HOM05D000082 ORTHO05D000038 9.4e-06 56.2 54 37.0
Gohir.A04G051300 Gossypium hirsutum HOM05D000341 ORTHO05D001197 9.4e-06 56.2 97 33.0


User provided reference genes

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