Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.007G107400 Populus trichocarpa HOM05D003810 ORTHO05D004416 2.8e-302 1041.2 546 100.0
Sabra07G0088100 Salix brachista HOM05D003810 ORTHO05D004416 1.4e-272 942.6 595 84.4
Manes.02G224100 Manihot esculenta HOM05D003810 ORTHO05D004416 7.4e-202 707.6 485 74.4
Thecc.09G267400 Theobroma cacao HOM05D003810 ORTHO05D004416 5.7e-186 654.8 539 63.5
Potri.005G061432 Populus trichocarpa HOM05D003810 ORTHO05D004416 5.9e-183 644.8 364 92.3
Duzib150G1314 Durio zibethinus HOM05D003810 ORTHO05D004416 6.1e-180 634.8 539 62.7
Gorai.001G127200 Gossypium raimondii HOM05D003810 ORTHO05D004416 8.0e-180 634.4 539 62.3
Gohir.D07G118250 Gossypium hirsutum HOM05D003810 ORTHO05D004416 3.0e-179 632.5 539 62.2
Ciclev10007802m.g Citrus clementina HOM05D003810 ORTHO05D004416 1.4e-176 623.6 539 61.6
Eucgr.J01409 Eucalyptus grandis HOM05D003810 ORTHO05D004416 5.9e-175 618.2 541 60.4
GSVIVG01014785001 Vitis vinifera HOM05D003810 ORTHO05D004416 1.7e-174 616.7 541 61.4
Rhsim04G0009500 Rhododendron simsii HOM05D003810 ORTHO05D004416 3.0e-171 605.9 542 60.3
CSS0024914 Camellia sinensis var. sinensis HOM05D003810 ORTHO05D004416 6.8e-171 604.7 544 60.5
QL08p001596 Quercus lobata HOM05D003810 ORTHO05D004416 2.6e-170 602.8 560 59.5
Atru.chr2.3847 Acer truncatum HOM05D003810 ORTHO05D004416 9.8e-170 600.9 541 59.1
MELO3C020474.2 Cucumis melo HOM05D003810 ORTHO05D004416 9.8e-170 600.9 541 60.6
Dinv40895 Davidia involucrata HOM05D003810 ORTHO05D004416 1.7e-169 600.1 541 59.5
CsaV3_4G027560 Cucumis sativus L. HOM05D003810 ORTHO05D004416 2.2e-169 599.7 541 60.6
COL.COLO4_25217 Corchorus olitorius HOM05D003810 ORTHO05D004416 2.8e-169 599.4 539 59.4
Cfa016940 Carpinus fangiana HOM05D003810 ORTHO05D004416 7.0e-168 594.7 549 59.0
Atru.chr12.1053 Acer truncatum HOM05D003810 ORTHO05D004416 1.2e-167 594.0 540 58.9
CANSAT11G0157 Cannabis sativa HOM05D003810 ORTHO05D004416 2.7e-167 592.8 546 59.5
Sed0019869 Sechium edule HOM05D003810 ORTHO05D004416 3.3e-165 585.9 543 59.1
RcHm_v2.0_Chr7g0221221 Rosa chinensis HOM05D003810 ORTHO05D004416 6.1e-164 581.6 542 57.6
TWI23G0485 Tripterygium wilfordii HOM05D003810 ORTHO05D004416 1.8e-163 580.1 545 58.3
Sc14g0003560 Simmondsia chinensis HOM05D003810 ORTHO05D004416 1.2e-162 577.4 543 57.6
FvH4_5g28910 Fragaria vesca HOM05D003810 ORTHO05D004416 4.4e-162 575.5 539 57.0
CiPaw.11G208700 Carya illinoinensis HOM05D003810 ORTHO05D004416 9.8e-162 574.3 543 57.8
MD15G1441400 Malus domestica HOM05D003810 ORTHO05D004416 2.9e-161 572.8 538 58.7
PGR042G2745 Punica granatum HOM05D003810 ORTHO05D004416 8.3e-161 571.2 542 56.3
THA.LOC104815683 Tarenaya hassleriana HOM05D003810 ORTHO05D004416 1.6e-159 567.0 537 58.1
Aa31LG10G490 Aethionema arabicum HOM05D003810 ORTHO05D004416 5.9e-159 565.1 537 57.2
TPR.G13386 Trifolium pratense HOM05D003810 ORTHO05D004416 5.9e-159 565.1 535 58.1
Hma1.2p1_0193F.1_g084130 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 1.0e-158 564.3 555 57.1
Thhalv10011333m.g Eutrema salsugineum HOM05D003810 ORTHO05D004416 1.7e-158 563.5 534 57.7
HanXRQChr05g0160211 Helianthus annuus HOM05D003810 ORTHO05D004416 1.9e-157 560.1 540 56.3
PSO063G0853 Papaver somniferum HOM05D003810 ORTHO05D004416 2.5e-157 559.7 548 55.8
Lj5g0018758 Lotus japonicus HOM05D003810 ORTHO05D004416 3.3e-157 559.3 536 58.0
AT1G55750 Arabidopsis thaliana HOM05D003810 ORTHO05D004416 4.3e-157 558.9 537 57.0
Prupe.1G583500 Prunus persica HOM05D003810 ORTHO05D004416 4.3e-157 558.9 552 56.2
PSO782G5597 Papaver somniferum HOM05D003810 ORTHO05D004416 5.6e-157 558.5 548 55.7
Phvul.007G134900 Phaseolus vulgaris HOM05D003810 ORTHO05D004416 5.6e-157 558.5 538 57.6
FAN04G0096 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.6e-156 557.0 540 56.3
VMungo0720G2836 Vigna mungo HOM05D003810 ORTHO05D004416 1.6e-156 557.0 538 57.4
AL1G63840 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 2.8e-156 556.2 537 57.0
Haze_09895 Corylus avellana HOM05D003810 ORTHO05D004416 3.6e-156 555.8 574 55.1
MSTRG.13036 Avicennia marina HOM05D003810 ORTHO05D004416 4.7e-156 555.4 541 56.7
Carub.0001s4426 Capsella rubella HOM05D003810 ORTHO05D004416 8.0e-156 554.7 538 56.9
Sopen10g001850 Solanum pennellii HOM05D003810 ORTHO05D004416 6.8e-155 551.6 541 56.6
Solyc10g005900.3 Solanum lycopersicum HOM05D003810 ORTHO05D004416 2.6e-154 549.7 541 56.4
BcaB05g24435 Brassica carinata HOM05D003810 ORTHO05D004416 4.4e-154 548.9 529 56.9
Cpa.g.sc181.12 Carica papaya HOM05D003810 ORTHO05D004416 4.4e-154 548.9 506 60.3
Actinidia00838 Actinidia chinensis HOM05D003810 ORTHO05D004416 9.8e-154 547.7 492 61.6
Glyma.20G197500 Glycine max HOM05D003810 ORTHO05D004416 9.8e-154 547.7 538 56.7
Nitab4.5_0001622g0070 Nicotiana tabacum HOM05D003810 ORTHO05D004416 1.3e-153 547.4 541 56.4
AT3G61420 Arabidopsis thaliana HOM05D003810 ORTHO05D004416 1.7e-153 547.0 532 56.4
vmacro09609 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 2.9e-153 546.2 676 48.2
vmacro22299 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 2.9e-153 546.2 676 48.2
Nitab4.5_0000611g0250 Nicotiana tabacum HOM05D003810 ORTHO05D004416 3.7e-153 545.8 541 56.4
CAN.G492.44 Capsicum annuum HOM05D003810 ORTHO05D004416 4.9e-153 545.4 538 55.9
Cc00_g20590 Coffea canephora HOM05D003810 ORTHO05D004416 4.9e-153 545.4 535 55.9
Migut.H01729 Erythranthe guttata HOM05D003810 ORTHO05D004416 4.9e-153 545.4 539 55.5
ClCG04G003010 Citrullus lanatus HOM05D003810 ORTHO05D004416 3.2e-152 542.7 542 56.6
Sp5g24310 Schrenkiella parvula HOM05D003810 ORTHO05D004416 4.1e-152 542.3 529 56.5
ATR0751G036 Amborella trichopoda HOM05D003810 ORTHO05D004416 1.2e-151 540.8 544 54.6
BcaC03g15064 Brassica carinata HOM05D003810 ORTHO05D004416 2.0e-151 540.0 528 56.1
Ca_10408_v3 Cicer arietinum L. HOM05D003810 ORTHO05D004416 2.0e-151 540.0 564 53.9
Psat6g170400 Pisum sativum HOM05D003810 ORTHO05D004416 2.7e-151 539.7 532 56.6
CARHR045410 Cardamine hirsuta HOM05D003810 ORTHO05D004416 3.5e-151 539.3 539 55.5
Peaxi162Scf00212g00616 Petunia axillaris HOM05D003810 ORTHO05D004416 3.5e-151 539.3 534 55.8
Aqoxy3G00950 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 4.6e-151 538.9 548 54.2
C02p26210 Brassica napus HOM05D003810 ORTHO05D004416 7.8e-151 538.1 528 55.9
BolC2t08687H Brassica oleracea HOM05D003810 ORTHO05D004416 7.8e-151 538.1 528 55.9
Medtr1g090110 Medicago truncatula HOM05D003810 ORTHO05D004416 2.3e-150 536.6 532 55.8
AL5G43720 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 5.0e-150 535.4 532 55.3
FAN08G2973 Fragaria x ananassa HOM05D003810 ORTHO05D004416 3.3e-149 532.7 546 54.0
arahy.Tifrunner.gnm1.ann1.KKS8QY Arachis hypogaea HOM05D003810 ORTHO05D004416 4.3e-149 532.3 536 54.9
MBI15_g00877_MAGBIO Magnolia biondii HOM05D003810 ORTHO05D004416 1.1e-147 527.7 548 54.6
A02p15760 Brassica napus HOM05D003810 ORTHO05D004416 1.4e-147 527.3 530 55.1
ECA246G2898 Erigeron canadensis HOM05D003810 ORTHO05D004416 2.3e-147 526.6 538 53.2
BraA02t06637Z Brassica rapa HOM05D003810 ORTHO05D004416 3.1e-147 526.2 531 55.2
Nn2g14662 Nelumbo nucifera HOM05D003810 ORTHO05D004416 2.0e-146 523.5 549 54.3
AUR62017624 Chenopodium quinoa HOM05D003810 ORTHO05D004416 7.5e-146 521.5 547 55.4
DCAR_017597 Daucus carota HOM05D003810 ORTHO05D004416 9.9e-146 521.2 530 55.7
FAN18G3759 Fragaria x ananassa HOM05D003810 ORTHO05D004416 3.7e-145 519.2 663 46.2
Glyma.10G193000 Glycine max HOM05D003810 ORTHO05D004416 1.4e-144 517.3 511 56.8
Aqoxy2G00893 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 4.6e-143 512.3 546 53.5
Lj3C711T10 Lonicera japonica HOM05D003810 ORTHO05D004416 1.3e-142 510.8 488 57.2
Oeu062684.4 Olea europaea HOM05D003810 ORTHO05D004416 1.9e-141 506.9 634 48.7
Ah.01g013210 Amaranthus hybridus HOM05D003810 ORTHO05D004416 8.9e-139 498.0 491 56.4
arahy.Tifrunner.gnm1.ann1.60T2A8 Arachis hypogaea HOM05D003810 ORTHO05D004416 3.4e-138 496.1 536 52.6
EL10Ac9g22878 Beta vulgaris HOM05D003810 ORTHO05D004416 3.8e-137 492.7 547 52.3
Lsat_1_v5_gn_1_66020 Lactuca sativa HOM05D003810 ORTHO05D004416 1.4e-136 490.7 549 51.2
Medtr6g071555 Medicago truncatula HOM05D003810 ORTHO05D004416 1.4e-136 490.7 533 52.2
Lj3A773G17 Lonicera japonica HOM05D003810 ORTHO05D004416 2.4e-136 490.0 525 53.0
HPP92_028601 Vanilla planifolia HOM05D003810 ORTHO05D004416 9.2e-136 488.0 535 51.6
Os08g0338200 Oryza sativa ssp. japonica HOM05D003810 ORTHO05D004416 2.1e-135 486.9 545 51.4
AUR62015172 Chenopodium quinoa HOM05D003810 ORTHO05D004416 4.4e-130 469.2 518 54.1
CDE04G2581 Ceratophyllum demersum HOM05D003810 ORTHO05D004416 2.4e-128 463.4 525 52.0
FAN14G4445 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.3e-126 457.6 579 47.2
Gohir.A07G114448 Gossypium hirsutum HOM05D003810 ORTHO05D004416 1.2e-122 444.5 360 64.2
unitig_61.g26129 Utricularia gibba HOM05D003810 ORTHO05D004416 3.4e-122 443.0 537 48.8
SGA_v2.0_scaffold42G15939 Striga asiatica HOM05D003810 ORTHO05D004416 1.7e-121 440.7 594 46.5
TAR629G3163 Trochodendron aralioides HOM05D003810 ORTHO05D004416 6.0e-119 432.2 452 54.6
Lsat_1_v5_gn_9_33460 Lactuca sativa HOM05D003810 ORTHO05D004416 1.8e-118 430.6 541 47.9
SGA_v2.0_scaffold146G36126 Striga asiatica HOM05D003810 ORTHO05D004416 5.1e-118 429.1 540 47.8
Dinv10375 Davidia involucrata HOM05D003810 ORTHO05D004416 1.6e-116 424.1 538 48.1
Duzib168G0397 Durio zibethinus HOM05D003810 ORTHO05D004416 8.1e-116 421.8 376 62.0
Lj1A897G41 Lonicera japonica HOM05D003810 ORTHO05D004416 2.4e-115 420.2 408 56.9
Zm00001eb172700 Zea mays HOM05D003810 ORTHO05D004416 2.9e-113 413.3 478 50.0
FvH4_6g25000 Fragaria vesca HOM05D003810 ORTHO05D004416 7.1e-112 408.7 415 53.7
Aqoxy7G03331 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 8.7e-110 401.7 434 53.2
TAR627G1185 Trochodendron aralioides HOM05D003810 ORTHO05D004416 7.4e-109 398.7 371 58.5
Pp3c26_14480 Physcomitrium patens HOM05D003810 ORTHO05D004416 2.2e-105 387.1 547 40.8
Prupe.5G213500 Prunus persica HOM05D003810 ORTHO05D004416 5.5e-104 382.5 474 47.0
BcaB07g33855 Brassica carinata HOM05D003810 ORTHO05D004416 1.9e-101 374.0 509 43.4
AagrBONN_evm.TU.Sc2ySwM_117.3105 Anthoceros agrestis HOM05D003810 ORTHO05D004416 2.5e-101 373.6 544 43.0
Mapoly0009s0093 Marchantia polymorpha HOM05D003810 ORTHO05D004416 8.2e-100 368.6 545 41.5
Lalb_Chr06g0169751 Lupinus albus HOM05D003810 ORTHO05D004416 4.8e-92 342.8 329 57.4
Prupe.5G046900 Prunus persica HOM05D003810 ORTHO05D004416 3.8e-89 333.2 477 43.8
QL04p000617 Quercus lobata HOM05D003810 ORTHO05D004416 1.4e-86 324.7 428 48.6
CiPaw.14G066900 Carya illinoinensis HOM05D003810 ORTHO05D004416 4.2e-80 303.1 279 59.1
FAN02G0111 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.7e-76 291.2 448 43.3
BcaC08g42928 Brassica carinata HOM05D003810 ORTHO05D004416 2.4e-75 287.3 415 44.6
FAN02G0356 Fragaria x ananassa HOM05D003810 ORTHO05D004416 9.1e-75 285.4 381 47.0
Thhalv10011448m.g Eutrema salsugineum HOM05D003810 ORTHO05D004416 1.6e-74 284.6 507 38.7
MD08G1246300 Malus domestica HOM05D003810 ORTHO05D004416 2.5e-72 277.3 231 62.8
CARHR219980 Cardamine hirsuta HOM05D003810 ORTHO05D004416 3.6e-71 273.5 311 50.8
SMO228G0023 Selaginella moellendorffii HOM05D003810 ORTHO05D004416 3.1e-67 260.4 553 34.2
SHI21694 Sapria himalayana HOM05D003810 ORTHO05D004416 7.7e-66 255.8 239 56.9
Potri.005G061366 Populus trichocarpa HOM05D003810 ORTHO05D004416 1.5e-64 251.5 151 84.8
FAN02G2818 Fragaria x ananassa HOM05D003810 ORTHO05D004416 2.3e-62 244.2 303 46.5
FAN09G2262 Fragaria x ananassa HOM05D003810 ORTHO05D004416 2.8e-60 237.3 333 45.9
BolC6t35297H Brassica oleracea HOM05D003810 ORTHO05D004416 2.7e-58 230.7 323 44.3
Lj3g0026478 Lotus japonicus HOM05D003810 ORTHO05D004416 2.9e-57 227.3 277 47.3
FAN05G0299 Fragaria x ananassa HOM05D003810 ORTHO05D010162 3.8e-57 226.9 248 52.0
Lalb_Chr06g0169761 Lupinus albus HOM05D003810 ORTHO05D004416 1.9e-56 224.6 204 58.3
CBR_g28523 Chara braunii HOM05D000019 ORTHO05D000002 3.3e-56 223.8 249 47.4
RcHm_v2.0_Chr2g0090241 Rosa chinensis HOM05D003810 ORTHO05D004416 4.0e-54 216.9 518 35.3
CiPaw.14G066700 Carya illinoinensis HOM05D003810 ORTHO05D004416 2.0e-50 204.5 208 52.4
Rhsim05G0134800 Rhododendron simsii HOM05D003492 ORTHO05D005115 7.5e-45 186.0 345 38.3
Gohir.A07G114432 Gossypium hirsutum HOM05D003810 ORTHO05D004416 3.7e-44 183.7 151 63.6
Hma1.2p1_2995F.1_g331440 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 8.3e-44 182.6 245 49.4
Lj1A897G42 Lonicera japonica HOM05D003810 ORTHO05D004416 2.3e-41 174.5 131 67.2
Sabra05G0051600 Salix brachista HOM05D003810 ORTHO05D004416 8.6e-41 172.6 243 50.6
MD08G1246400 Malus domestica HOM05D003810 ORTHO05D004416 1.1e-38 165.6 150 58.7
Hma1.2p1_2995F.1_g331430 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 1.9e-35 154.8 199 45.7
CAN.G306.2 Capsicum annuum HOM05D003810 ORTHO05D004416 9.2e-35 152.5 182 51.1
CAN.G306.3 Capsicum annuum HOM05D003810 ORTHO05D004416 1.2e-34 152.1 182 51.1
HPP92_016056 Vanilla planifolia HOM05D003810 ORTHO05D004416 1.6e-34 151.8 123 60.2
Hund17709 Selenicereus undatus HOM05D003810 ORTHO05D004416 3.5e-34 150.6 224 43.3
TAR627G1127 Trochodendron aralioides HOM05D003810 ORTHO05D004416 3.0e-33 147.5 121 62.0
SHI21692 Sapria himalayana HOM05D003810 ORTHO05D004416 2.8e-31 141.0 104 66.3
ECA233G1945 Erigeron canadensis HOM05D000449 ORTHO05D003939 6.2e-31 139.8 239 38.9
Actinidia03659 Actinidia chinensis HOM05D003810 ORTHO05D004416 5.2e-30 136.7 141 53.2
Oeu005536.2 Olea europaea HOM05D003810 ORTHO05D004416 5.1e-25 120.2 166 44.6
QL12p013194 Quercus lobata HOM05D003810 ORTHO05D004416 2.4e-22 111.3 191 40.3
SGA_v2.0_scaffold126G33829 Striga asiatica HOM05D003810 ORTHO05D004416 2.1e-18 98.2 173 42.2
PRCOL_00004489 Prasinoderma coloniale HOM05D003810 ORTHO05D004416 5.6e-16 90.1 528 23.9
SalBow3G3831 Salvia bowleyana HOM05D003810 ORTHO05D004416 5.6e-16 90.1 67 64.2
CAN.G790.44 Capsicum annuum HOM05D000872 ORTHO05D000777 8.1e-15 86.3 80 55.0
MCO14G434 Micromonas commoda HOM05D003810 ORTHO05D004416 8.1e-15 86.3 362 26.2
SHI21696 Sapria himalayana HOM05D003810 ORTHO05D004416 7.6e-13 79.7 95 47.4
CAN.G1328.7 Capsicum annuum HOM05D003810 ORTHO05D004416 1.7e-12 78.6 79 49.4
CAN.G312.5 Capsicum annuum HOM05D003810 ORTHO05D000001 2.2e-12 78.2 75 53.3
Hund08475 Selenicereus undatus HOM05D000185 ORTHO05D000105 8.4e-12 76.3 58 67.2
CAN.G289.45 Capsicum annuum HOM05D002177 ORTHO05D004416 3.2e-11 74.3 80 48.8
CAN.G1057.19 Capsicum annuum HOM05D000222 ORTHO05D004416 4.2e-11 73.9 80 47.5
Cre10.g466550 Chlamydomonas reinhardtii HOM05D003810 ORTHO05D004416 6.0e-10 70.1 259 25.5
CDE07G1690 Ceratophyllum demersum HOM05D003810 ORTHO05D004416 3.9e-09 67.4 71 47.9
MD08G1246200 Malus domestica HOM05D003810 ORTHO05D004416 1.8e-06 58.5 151 30.5


User provided reference genes

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