Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G281000 Populus trichocarpa HOM05D003985 ORTHO05D005253 0.0e+00 1312.0 632 100.0
Sabra18G0005700 Salix brachista HOM05D003985 ORTHO05D005253 0.0e+00 1111.3 661 82.9
Potri.018G000500 Populus trichocarpa HOM05D003985 ORTHO05D005253 0.0e+00 1101.3 661 82.6
Atru.chr7.2713 Acer truncatum HOM05D003985 ORTHO05D005253 2.1e-288 995.3 665 74.7
QL12p024588 Quercus lobata HOM05D003985 ORTHO05D005253 8.1e-285 983.4 665 73.8
Gorai.001G001100 Gossypium raimondii HOM05D003985 ORTHO05D005253 1.1e-284 983.0 666 72.5
Gohir.A07G001000 Gossypium hirsutum HOM05D003985 ORTHO05D005253 1.4e-284 982.6 666 73.0
CiPaw.08G017300 Carya illinoinensis HOM05D003985 ORTHO05D005253 3.1e-284 981.5 665 73.7
Thecc.09G001600 Theobroma cacao HOM05D003985 ORTHO05D005253 5.8e-283 977.2 666 72.5
Gohir.D07G001400 Gossypium hirsutum HOM05D003985 ORTHO05D005253 2.2e-282 975.3 666 72.1
Glyma.04G074200 Glycine max HOM05D003985 ORTHO05D005253 7.9e-280 966.8 665 72.6
Phvul.009G099900 Phaseolus vulgaris HOM05D003985 ORTHO05D005253 5.1e-279 964.1 665 72.8
Dinv37477 Davidia involucrata HOM05D003985 ORTHO05D005253 7.4e-278 960.3 670 72.1
Prupe.1G463300 Prunus persica HOM05D003985 ORTHO05D005253 2.1e-277 958.7 666 71.6
GSVIVG01035593001 Vitis vinifera HOM05D003985 ORTHO05D005253 4.8e-277 957.6 670 72.1
Glyma.06G075300 Glycine max HOM05D003985 ORTHO05D005253 6.2e-277 957.2 663 71.9
Aqoxy7G02572 Aquilegia oxysepala HOM05D003985 ORTHO05D005253 4.0e-276 954.5 668 70.2
Nn7g37851 Nelumbo nucifera HOM05D003985 ORTHO05D005253 1.5e-275 952.6 667 71.8
TWI63G1282 Tripterygium wilfordii HOM05D003985 ORTHO05D005253 2.6e-275 951.8 667 70.3
TAR625G0977 Trochodendron aralioides HOM05D003985 ORTHO05D005253 3.4e-275 951.4 672 71.6
arahy.Tifrunner.gnm1.ann1.S977N0 Arachis hypogaea HOM05D003985 ORTHO05D005253 5.8e-275 950.7 665 71.0
MD08G1132700 Malus domestica HOM05D003985 ORTHO05D005253 7.6e-275 950.3 666 70.6
Actinidia14151 Actinidia chinensis HOM05D003985 ORTHO05D005253 2.2e-274 948.7 664 71.1
Ciclev10007631m.g Citrus clementina HOM05D003985 ORTHO05D005253 2.2e-274 948.7 717 67.5
Hma1.2p1_0214F.1_g090700 Hydrangea macrophylla HOM05D003985 ORTHO05D005253 2.9e-274 948.3 670 71.2
arahy.Tifrunner.gnm1.ann1.66HY6B Arachis hypogaea HOM05D003985 ORTHO05D005253 4.9e-274 947.6 665 70.7
Lj1g0007461 Lotus japonicus HOM05D003985 ORTHO05D005253 2.4e-273 945.3 666 70.3
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 1.3e-271 939.5 665 71.3
FAN15G3026 Fragaria x ananassa HOM05D003985 ORTHO05D005253 1.3e-271 939.5 666 70.1
RcHm_v2.0_Chr6g0312391 Rosa chinensis HOM05D003985 ORTHO05D005253 1.8e-271 939.1 666 70.3
BcaNung01543 Brassica carinata HOM05D003985 ORTHO05D005253 2.3e-271 938.7 665 69.6
Sed0018239 Sechium edule HOM05D003985 ORTHO05D005253 2.3e-271 938.7 665 70.1
FAN24G2613 Fragaria x ananassa HOM05D003985 ORTHO05D005253 3.0e-271 938.3 666 70.0
THA.LOC104803893 Tarenaya hassleriana HOM05D003985 ORTHO05D005253 6.7e-271 937.2 666 69.5
Ca_15682_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 3.3e-270 934.9 665 70.8
BcaNung02721 Brassica carinata HOM05D003985 ORTHO05D005253 5.6e-270 934.1 665 69.3
Cc07_g19480 Coffea canephora HOM05D003985 ORTHO05D005253 1.3e-269 932.9 666 70.3
BcaB03g12676 Brassica carinata HOM05D003985 ORTHO05D005253 2.1e-269 932.2 666 69.4
BcaNung03411 Brassica carinata HOM05D003985 ORTHO05D005253 2.1e-269 932.2 665 69.3
MD15G1112100 Malus domestica HOM05D003985 ORTHO05D005253 6.2e-269 930.6 664 69.0
Eucgr.D02618 Eucalyptus grandis HOM05D003985 ORTHO05D005253 1.1e-268 929.9 667 69.3
BraA03t15094Z Brassica rapa HOM05D003985 ORTHO05D005253 3.1e-268 928.3 665 69.2
Sp7g29000 Schrenkiella parvula HOM05D003985 ORTHO05D005253 3.1e-268 928.3 665 68.7
Carub.0007s0941 Capsella rubella HOM05D003985 ORTHO05D005253 1.5e-267 926.0 665 69.2
Thhalv10024653m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 2.0e-267 925.6 665 69.0
TPR.G12431 Trifolium pratense HOM05D003985 ORTHO05D005253 2.0e-267 925.6 665 70.1
Lalb_Chr11g0064061 Lupinus albus HOM05D003985 ORTHO05D005253 2.6e-267 925.2 666 69.4
PSO170G0668 Papaver somniferum HOM05D003985 ORTHO05D005253 1.3e-266 922.9 668 69.9
PSO455G0188 Papaver somniferum HOM05D003985 ORTHO05D005253 2.2e-266 922.2 667 69.9
HanXRQChr03g0082341 Helianthus annuus HOM05D003985 ORTHO05D005253 8.4e-266 920.2 686 67.2
Cfa013241 Carpinus fangiana HOM05D003985 ORTHO05D005253 1.4e-265 919.5 617 73.7
CARHR239030 Cardamine hirsuta HOM05D003985 ORTHO05D005253 1.9e-265 919.1 665 68.4
ECA240G2540 Erigeron canadensis HOM05D003985 ORTHO05D005253 1.9e-265 919.1 673 68.4
Medtr3g108640 Medicago truncatula HOM05D003985 ORTHO05D005253 1.9e-265 919.1 666 69.8
BraA08t33849Z Brassica rapa HOM05D003985 ORTHO05D005253 7.1e-265 917.1 666 68.3
AL7G20950 Arabidopsis lyrata HOM05D003985 ORTHO05D005253 3.5e-264 914.8 665 68.0
DCAR_001159 Daucus carota HOM05D003985 ORTHO05D005253 4.6e-264 914.4 669 68.9
Sc06g0000030 Simmondsia chinensis HOM05D003985 ORTHO05D005253 6.0e-264 914.1 670 68.8
Sc06g0001350 Simmondsia chinensis HOM05D003985 ORTHO05D005253 6.0e-264 914.1 670 68.8
Nitab4.5_0000860g0110 Nicotiana tabacum HOM05D003985 ORTHO05D005253 1.0e-263 913.3 671 67.5
MSTRG.13931 Avicennia marina HOM05D003985 ORTHO05D005253 1.3e-263 912.9 668 68.6
CAN.G940.15 Capsicum annuum HOM05D003985 ORTHO05D005253 1.8e-263 912.5 671 67.7
Peaxi162Scf00045g01452 Petunia axillaris HOM05D003985 ORTHO05D005253 1.8e-263 912.5 670 68.1
Sopen08g001940 Solanum pennellii HOM05D003985 ORTHO05D005253 2.3e-263 912.1 671 67.8
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 2.3e-263 912.1 681 67.1
BcaC01g01113 Brassica carinata HOM05D003985 ORTHO05D005253 3.0e-263 911.8 665 68.0
BolC3t21136H Brassica oleracea HOM05D003985 ORTHO05D005253 3.0e-263 911.8 665 68.0
Manes.12G085100 Manihot esculenta HOM05D003985 ORTHO05D005253 1.1e-262 909.8 610 75.7
Solyc08g005970.3 Solanum lycopersicum HOM05D003985 ORTHO05D005253 1.5e-262 909.4 671 67.7
Psat0s2583g0040 Pisum sativum HOM05D003985 ORTHO05D005253 1.9e-262 909.1 665 68.3
AT4G31120 Arabidopsis thaliana HOM05D003985 ORTHO05D005253 4.3e-262 907.9 665 67.5
C03p88280 Brassica napus HOM05D003985 ORTHO05D005253 4.3e-262 907.9 665 67.8
MELO3C030447.2 Cucumis melo HOM05D003985 ORTHO05D005253 4.3e-262 907.9 690 66.7
Migut.E01402 Erythranthe guttata HOM05D003985 ORTHO05D005253 6.3e-261 904.0 670 67.5
Oeu002012.3 Olea europaea HOM05D003985 ORTHO05D005253 6.3e-261 904.0 721 64.1
Haze_21675 Corylus avellana HOM05D003985 ORTHO05D005253 1.4e-260 902.9 664 68.8
A08p18880 Brassica napus HOM05D003985 ORTHO05D005253 1.8e-260 902.5 692 65.8
Lsat_1_v5_gn_5_59301 Lactuca sativa HOM05D003985 ORTHO05D005253 1.8e-260 902.5 660 67.9
PGR044G2633 Punica granatum HOM05D003985 ORTHO05D005253 5.9e-259 897.5 695 65.2
FAN27G1558 Fragaria x ananassa HOM05D003985 ORTHO05D005253 3.8e-258 894.8 691 65.8
Aa31LG2G19220 Aethionema arabicum HOM05D003985 ORTHO05D005253 1.1e-257 893.3 685 65.8
FAN20G2665 Fragaria x ananassa HOM05D003985 ORTHO05D005253 3.6e-256 888.3 683 65.7
ATR0626G195 Amborella trichopoda HOM05D003985 ORTHO05D005253 8.7e-255 883.6 675 66.4
ClCG05G017380 Citrullus lanatus HOM05D003985 ORTHO05D005253 6.9e-252 874.0 663 66.4
AUR62020691 Chenopodium quinoa HOM05D003985 ORTHO05D005253 1.2e-251 873.2 665 66.3
SalBow8G1365 Salvia bowleyana HOM05D003985 ORTHO05D005253 1.0e-250 870.2 695 64.5
CSS0024851 Camellia sinensis var. sinensis HOM05D003985 ORTHO05D005253 2.9e-250 868.6 649 68.9
Lj8A420G13 Lonicera japonica HOM05D003985 ORTHO05D005253 7.2e-249 864.0 670 67.0
AUR62028034 Chenopodium quinoa HOM05D003985 ORTHO05D005253 6.7e-247 857.4 716 61.9
HPP92_026442 Vanilla planifolia HOM05D003985 ORTHO05D005253 8.8e-247 857.1 671 64.5
BolC7t46300H Brassica oleracea HOM05D003985 ORTHO05D005253 8.2e-245 850.5 688 64.1
SEGI_26514 Sequoiadendron giganteum HOM05D003985 ORTHO05D005253 3.1e-244 848.6 679 62.7
Lalb_Chr08g0243681 Lupinus albus HOM05D003985 ORTHO05D005253 7.2e-241 837.4 605 70.1
Os02g0139200 Oryza sativa ssp. japonica HOM05D003985 ORTHO05D005253 9.4e-241 837.0 670 62.7
Zm00001eb232020 Zea mays HOM05D003985 ORTHO05D005253 1.7e-237 826.2 669 62.2
CiPaw.07G215500 Carya illinoinensis HOM05D003985 ORTHO05D005253 8.2e-237 823.9 561 72.0
Zm00001eb209210 Zea mays HOM05D003985 ORTHO05D005253 1.8e-236 822.8 670 61.5
EL10Ac2g03661 Beta vulgaris HOM05D003985 ORTHO05D005253 3.1e-236 822.0 700 61.1
unitig_0.g2194 Utricularia gibba HOM05D003985 ORTHO05D005253 1.0e-234 817.0 666 62.6
AagrBONN_evm.TU.Sc2ySwM_228.4220 Anthoceros agrestis HOM05D003985 ORTHO05D005253 3.2e-233 812.0 681 61.2
MBI13_g33580_MAGBIO Magnolia biondii HOM05D003985 ORTHO05D005253 3.2e-233 812.0 648 65.3
C07p58460 Brassica napus HOM05D003985 ORTHO05D005253 4.2e-233 811.6 580 69.3
Mapoly0116s0029 Marchantia polymorpha HOM05D003985 ORTHO05D005253 5.5e-233 811.2 679 60.5
Sed0018865 Sechium edule HOM05D003985 ORTHO05D005253 2.7e-232 808.9 664 60.8
A03p60550 Brassica napus HOM05D003985 ORTHO05D005253 6.7e-231 804.3 580 69.1
Pp3c1_39750 Physcomitrium patens HOM05D003985 ORTHO05D005253 1.4e-228 796.6 676 60.2
CDE06G1054 Ceratophyllum demersum HOM05D003985 ORTHO05D005253 7.2e-225 784.3 673 60.9
CBR_g50848 Chara braunii HOM05D003985 ORTHO05D005253 4.7e-224 781.6 679 58.5
Hund03241 Selenicereus undatus HOM05D003985 ORTHO05D005253 1.2e-222 776.9 803 54.0
Pp3c17_13030 Physcomitrium patens HOM05D003985 ORTHO05D005253 3.4e-222 775.4 676 58.9
CsaV3_3G046890 Cucumis sativus L. HOM05D003985 ORTHO05D005253 1.1e-220 770.4 543 69.2
Sp4g03340 Schrenkiella parvula HOM05D003985 ORTHO05D005253 4.9e-213 745.0 656 57.9
SMO334G0088 Selaginella moellendorffii HOM05D003985 ORTHO05D005253 3.5e-211 738.8 674 57.4
Lj8C416G1 Lonicera japonica HOM05D003985 ORTHO05D005253 5.0e-210 734.9 629 63.9
vmacro05088 Vaccinium macrocarpon HOM05D003985 ORTHO05D005253 7.3e-209 731.1 868 49.5
FvH4_2g30610 Fragaria vesca HOM05D003985 ORTHO05D005253 1.4e-204 716.8 515 69.1
Hma1.2p1_0268F.1_g107610 Hydrangea macrophylla HOM05D003985 ORTHO05D005253 1.1e-201 707.2 489 71.8
Carub.0004s0367 Capsella rubella HOM05D003985 ORTHO05D005253 7.3e-201 704.5 652 55.8
Pp3c17_13031 Physcomitrium patens HOM05D003985 ORTHO05D005253 3.7e-189 665.6 676 53.4
Rhsim07G0173800 Rhododendron simsii HOM05D003985 ORTHO05D005253 8.3e-189 664.5 512 67.0
TPR.G30956 Trifolium pratense HOM05D003985 ORTHO05D005253 3.3e-177 625.9 667 50.5
Ca_12891_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 9.6e-169 597.8 658 50.5
VMungo1309G1102 Vigna mungo HOM05D003985 ORTHO05D005253 1.9e-156 557.0 329 81.8
CARHR117750 Cardamine hirsuta HOM05D003985 ORTHO05D005253 7.1e-156 555.1 663 48.6
MD15G1112600 Malus domestica HOM05D003985 ORTHO05D005253 4.6e-155 552.4 390 70.3
Aa31sc593G10 Aethionema arabicum HOM05D003985 ORTHO05D005253 2.3e-154 550.1 515 57.9
Cre03.g176550 Chlamydomonas reinhardtii HOM05D003985 ORTHO05D005253 4.3e-153 545.8 721 42.2
Aa31LG7G12410 Aethionema arabicum HOM05D003985 ORTHO05D005253 9.0e-151 538.1 643 46.3
Thhalv10000136m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 1.1e-148 531.2 521 54.9
MCO04G116 Micromonas commoda HOM05D003985 ORTHO05D005253 1.1e-148 531.2 678 45.0
C01p07840 Brassica napus HOM05D003985 ORTHO05D005253 8.5e-141 505.0 328 74.4
BolC1t00771H Brassica oleracea HOM05D003985 ORTHO05D005253 5.1e-138 495.7 320 74.7
PRCOL_00000397 Prasinoderma coloniale HOM05D003985 ORTHO05D005253 4.2e-132 476.1 682 43.0
Nitab4.5_0020175g0010 Nicotiana tabacum HOM05D003985 ORTHO05D005253 1.1e-127 461.5 276 79.0
Thhalv10000691m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 3.9e-122 443.0 651 43.5
Ca_12890_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 1.3e-120 438.0 640 41.4
CARHR117740 Cardamine hirsuta HOM05D003985 ORTHO05D005253 2.1e-115 420.6 324 66.4
Nitab4.5_0003763g0040 Nicotiana tabacum HOM05D003985 ORTHO05D005253 8.8e-114 415.2 380 57.4
Cpa.g.sc52.83 Carica papaya HOM05D003985 ORTHO05D005253 2.2e-112 410.6 636 39.9
SHI03164 Sapria himalayana HOM05D003985 ORTHO05D005253 1.3e-104 384.8 391 55.0
VMungo1309G0405 Vigna mungo HOM05D003985 ORTHO05D005253 8.6e-101 372.1 296 64.9
BcaC09g51896 Brassica carinata HOM05D003985 ORTHO05D005253 4.0e-98 363.2 301 65.8
MD15G1112700 Malus domestica HOM05D003985 ORTHO05D005253 5.4e-87 326.2 233 67.4
MBI13_g46508_MAGBIO Magnolia biondii HOM05D003985 ORTHO05D005253 2.1e-70 271.2 231 56.7
SHI03163 Sapria himalayana HOM05D003985 ORTHO05D005253 3.9e-69 266.9 221 60.2
Haze_26428 Corylus avellana HOM05D003985 ORTHO05D005253 4.7e-67 260.0 500 36.4
Haze_26909 Corylus avellana HOM05D003985 ORTHO05D005253 3.1e-66 257.3 502 35.3
MD15G1111800 Malus domestica HOM05D003985 ORTHO05D005253 2.3e-61 241.1 304 45.7
Haze_26350 Corylus avellana HOM05D003985 ORTHO05D005253 5.1e-61 240.0 655 29.3
TPR.G30955 Trifolium pratense HOM05D003985 ORTHO05D005253 1.1e-60 238.8 436 36.2
Ca_12894_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 1.4e-58 231.9 200 58.5
COL.COLO4_18638 Corchorus olitorius HOM05D003985 ORTHO05D005253 2.2e-56 224.6 554 34.7
Ca_12896_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 7.1e-47 193.0 269 41.6
HanXRQChr08g0231401 Helianthus annuus HOM05D003985 ORTHO05D005253 7.1e-39 166.4 138 65.9
Ca_02459_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 7.9e-38 162.9 138 64.5
Oeu057141.1 Olea europaea HOM05D003985 ORTHO05D005253 8.7e-29 132.9 112 61.6
TPR.G30953 Trifolium pratense HOM05D003985 ORTHO05D005253 9.7e-28 129.4 108 62.0
TPR.G30960 Trifolium pratense HOM05D003985 ORTHO05D005253 2.0e-25 121.7 126 50.8
Rhsim07G0173700 Rhododendron simsii HOM05D003985 ORTHO05D023785 4.5e-25 120.6 229 37.6
arahy.Tifrunner.gnm1.ann1.AXX9EX Arachis hypogaea HOM05D003985 ORTHO05D023785 3.9e-21 107.5 80 63.8
Lalb_Chr08g0243671 Lupinus albus HOM05D003985 ORTHO05D044681 5.1e-21 107.1 59 71.2
Cc01_g20960 Coffea canephora HOM05D003985 ORTHO05D044681 9.7e-20 102.8 61 67.2
TPR.G39898 Trifolium pratense HOM05D003985 ORTHO05D044347 2.2e-19 101.7 69 65.2
BcaC09g51897 Brassica carinata HOM05D003985 ORTHO05D023785 2.4e-18 98.2 88 55.7
Ca_27914_v3 Cicer arietinum L. HOM05D003985 ORTHO05D044347 3.8e-16 90.9 65 70.8
Ca_12155_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 1.2e-14 85.9 50 80.0
Zm00001eb086470 Zea mays HOM05D000879 ORTHO05D002043 2.3e-13 81.6 162 33.3
TPR.G36216 Trifolium pratense HOM05D003985 ORTHO05D005253 3.0e-13 81.3 99 46.5
TPR.G29968 Trifolium pratense HOM05D001758 ORTHO05D005969 1.5e-12 79.0 53 71.7
TPR.G20415 Trifolium pratense HOM05D003985 ORTHO05D038560 2.0e-12 78.6 84 52.4
TAR636G2548 Trochodendron aralioides HOM05D003985 ORTHO05D031326 1.7e-11 75.5 50 70.0
BcaB02g10473 Brassica carinata HOM05D012099 ORTHO05D014504 3.8e-08 64.3 42 66.7
AL7G31410 Arabidopsis lyrata HOM05D003985 ORTHO05D031326 5.0e-08 63.9 42 71.4
BolC1t00770H Brassica oleracea HOM05D003985 ORTHO05D023785 5.0e-08 63.9 74 50.0
TPR.G33018 Trifolium pratense HOM05D000456 ORTHO05D000887 1.4e-07 62.4 47 74.5
AL4G14710 Arabidopsis lyrata HOM05D003985 ORTHO05D038560 4.2e-07 60.8 76 46.1
AL6G47194 Arabidopsis lyrata HOM05D003985 ORTHO05D031326 5.5e-07 60.5 42 66.7
CSS0001762 Camellia sinensis var. sinensis HOM05D003985 ORTHO05D023785 5.5e-07 60.5 52 63.5
SMO334G0030 Selaginella moellendorffii HOM05D003985 ORTHO05D005253 9.4e-07 59.7 48 52.1
QL03p050850 Quercus lobata HOM05D000143 ORTHO05D000072 1.2e-06 59.3 48 58.3


User provided reference genes

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