Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G216400 Populus trichocarpa HOM05D003777 ORTHO05D004690 0.0e+00 1204.5 664 100.0
Sabra06G0166800 Salix brachista HOM05D003777 ORTHO05D004690 0.0e+00 1103.2 630 94.4
Manes.12G016400 Manihot esculenta HOM05D003777 ORTHO05D004690 5.3e-279 964.1 667 79.8
QL03p055332 Quercus lobata HOM05D003777 ORTHO05D004690 2.3e-269 932.2 618 80.9
Manes.13G014300 Manihot esculenta HOM05D003777 ORTHO05D004690 5.5e-268 927.5 629 79.7
CiPaw.05G173500 Carya illinoinensis HOM05D003777 ORTHO05D004690 4.1e-263 911.4 670 75.5
TWI75G0300 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 7.0e-263 910.6 633 77.7
TWI36G1566 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 1.6e-262 909.4 635 78.0
Phvul.002G176900 Phaseolus vulgaris HOM05D003777 ORTHO05D004690 2.8e-259 898.7 667 72.6
Thecc.02G272700 Theobroma cacao HOM05D003777 ORTHO05D004690 4.7e-259 897.9 654 75.4
CSS0004768 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 1.2e-257 893.3 657 76.6
Cfa009302 Carpinus fangiana HOM05D003777 ORTHO05D004690 1.7e-256 889.4 671 75.4
Dinv18168 Davidia involucrata HOM05D003777 ORTHO05D004690 1.6e-254 882.9 682 71.8
CANSAT01G1767 Cannabis sativa HOM05D003777 ORTHO05D004690 6.0e-254 880.9 635 74.2
Cpa.g.sc86.2 Carica papaya HOM05D003777 ORTHO05D004690 1.3e-253 879.8 658 76.3
GSVIVG01010320001 Vitis vinifera HOM05D003777 ORTHO05D004690 8.0e-251 870.5 631 75.0
Glyma.05G144700 Glycine max HOM05D003777 ORTHO05D004690 8.9e-250 867.1 633 73.1
Nitab4.5_0002026g0090 Nicotiana tabacum HOM05D003777 ORTHO05D004690 2.9e-248 862.1 669 71.3
Duzib268G0959 Durio zibethinus HOM05D003777 ORTHO05D004690 4.9e-248 861.3 673 71.3
arahy.Tifrunner.gnm1.ann1.SED4J7 Arachis hypogaea HOM05D003777 ORTHO05D004690 1.1e-247 860.1 702 69.1
Nitab4.5_0000492g0120 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.1e-247 860.1 669 71.0
Gohir.D05G312600 Gossypium hirsutum HOM05D003777 ORTHO05D004690 1.4e-247 859.8 669 73.2
vmacro01091 Vaccinium macrocarpon HOM05D003777 ORTHO05D004690 1.9e-247 859.4 681 72.4
Lj4g0007172 Lotus japonicus HOM05D003777 ORTHO05D004690 5.4e-247 857.8 668 70.8
THA.LOC104825526 Tarenaya hassleriana HOM05D003777 ORTHO05D004690 7.1e-247 857.4 667 70.8
TAR374G1267 Trochodendron aralioides HOM05D003777 ORTHO05D004690 7.1e-247 857.4 639 72.0
Psat7g080080 Pisum sativum HOM05D003777 ORTHO05D004690 9.2e-247 857.1 634 72.6
Sed0005823 Sechium edule HOM05D003777 ORTHO05D004690 9.2e-247 857.1 619 74.8
TAR374G0928 Trochodendron aralioides HOM05D003777 ORTHO05D004690 1.2e-246 856.7 639 72.0
Gohir.A05G311500 Gossypium hirsutum HOM05D003777 ORTHO05D004690 1.6e-246 856.3 673 72.5
arahy.Tifrunner.gnm1.ann1.9WV3XJ Arachis hypogaea HOM05D003777 ORTHO05D004690 2.7e-246 855.5 667 71.1
Atru.chr11.2223 Acer truncatum HOM05D003777 ORTHO05D004690 6.0e-246 854.4 654 74.5
Duzib248G0478 Durio zibethinus HOM05D003777 ORTHO05D004690 7.8e-246 854.0 674 71.5
Solyc11g062270.2 Solanum lycopersicum HOM05D003777 ORTHO05D004690 3.0e-245 852.0 621 73.9
DCAR_021624 Daucus carota HOM05D003777 ORTHO05D004690 8.6e-245 850.5 638 71.8
Gorai.009G334100 Gossypium raimondii HOM05D003777 ORTHO05D004690 1.1e-244 850.1 669 72.8
Ca_18071_v3 Cicer arietinum L. HOM05D003777 ORTHO05D004690 1.9e-244 849.4 670 71.3
Lsat_1_v5_gn_2_96961 Lactuca sativa HOM05D003777 ORTHO05D004690 2.5e-244 849.0 670 70.4
MD13G1110100 Malus domestica HOM05D003777 ORTHO05D004690 7.3e-244 847.4 672 70.1
Sopen11g024250 Solanum pennellii HOM05D003777 ORTHO05D004690 2.1e-243 845.9 633 72.7
arahy.Tifrunner.gnm1.ann1.238UV6 Arachis hypogaea HOM05D003777 ORTHO05D004690 3.6e-243 845.1 668 70.7
Aa31LG4G12090 Aethionema arabicum HOM05D003777 ORTHO05D004690 2.3e-242 842.4 667 71.5
CsaV3_5G030580 Cucumis sativus L. HOM05D003777 ORTHO05D004690 4.0e-242 841.6 672 70.2
Actinidia08096 Actinidia chinensis HOM05D003777 ORTHO05D004690 1.2e-241 840.1 650 71.7
arahy.Tifrunner.gnm1.ann1.35MH8V Arachis hypogaea HOM05D003777 ORTHO05D004690 2.0e-241 839.3 682 69.6
MSTRG.12471 Avicennia marina HOM05D003777 ORTHO05D004690 2.0e-241 839.3 623 73.0
Medtr8g079990 Medicago truncatula HOM05D003777 ORTHO05D004690 2.6e-241 839.0 635 72.1
Oeu015952.1 Olea europaea HOM05D003777 ORTHO05D004690 2.6e-241 839.0 669 70.0
BcaB03g15177 Brassica carinata HOM05D003777 ORTHO05D004690 4.4e-241 838.2 671 69.7
Sp5g22670 Schrenkiella parvula HOM05D003777 ORTHO05D004690 1.3e-240 836.6 668 69.0
BcaC08g46176 Brassica carinata HOM05D003777 ORTHO05D004690 2.2e-240 835.9 670 69.0
C06p42580 Brassica napus HOM05D003777 ORTHO05D004690 2.2e-240 835.9 670 69.0
BolC6t39181H Brassica oleracea HOM05D003777 ORTHO05D004690 2.2e-240 835.9 670 69.0
MD16G1110000 Malus domestica HOM05D003777 ORTHO05D004690 2.2e-240 835.9 675 69.3
Lalb_Chr07g0187251 Lupinus albus HOM05D003777 ORTHO05D004690 3.7e-240 835.1 666 70.0
PGR102G0273 Punica granatum HOM05D003777 ORTHO05D004690 4.9e-240 834.7 669 70.7
CAN.G487.1 Capsicum annuum HOM05D003777 ORTHO05D004690 6.4e-240 834.3 668 69.6
Glyma.08G101100 Glycine max HOM05D003777 ORTHO05D004690 6.4e-240 834.3 633 71.1
PSO170G4787 Papaver somniferum HOM05D003777 ORTHO05D004690 1.9e-239 832.8 673 69.8
MELO3C011898.2 Cucumis melo HOM05D003777 ORTHO05D004690 4.1e-239 831.6 638 72.1
VMungo0251G0828 Vigna mungo HOM05D003777 ORTHO05D004690 1.7e-237 826.2 709 65.6
A07p32470 Brassica napus HOM05D003777 ORTHO05D004690 1.5e-236 823.2 668 69.2
ClCG05G026250 Citrullus lanatus HOM05D003777 ORTHO05D004690 2.5e-236 822.4 657 70.2
Dinv11003 Davidia involucrata HOM05D003777 ORTHO05D004690 4.3e-236 821.6 673 68.8
AT1G67680 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 5.6e-236 821.2 678 67.0
Hund25014 Selenicereus undatus HOM05D003777 ORTHO05D004690 7.3e-236 820.8 635 71.7
Aqoxy5G03557 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 1.2e-235 820.1 655 69.0
DCAR_021625 Daucus carota HOM05D003777 ORTHO05D004690 4.7e-235 818.1 639 70.1
Peaxi162Scf00029g02527 Petunia axillaris HOM05D003777 ORTHO05D004690 4.7e-235 818.1 668 69.0
PSO063G1619 Papaver somniferum HOM05D003777 ORTHO05D004690 2.4e-234 815.8 629 70.7
AL2G26380 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 4.0e-234 815.1 666 68.0
Thhalv10018246m.g Eutrema salsugineum HOM05D003777 ORTHO05D004690 6.8e-234 814.3 669 67.4
SGA_v2.0_scaffold247G44863 Striga asiatica HOM05D003777 ORTHO05D004690 8.9e-234 813.9 697 66.9
TPR.G17105 Trifolium pratense HOM05D003777 ORTHO05D004690 2.6e-233 812.4 673 68.2
ECA233G1683 Erigeron canadensis HOM05D003777 ORTHO05D004690 3.8e-232 808.5 672 68.2
Hma1.2p1_0079F.1_g041650 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 8.4e-232 807.4 670 68.4
CARHR060270 Cardamine hirsuta HOM05D003777 ORTHO05D004690 1.9e-231 806.2 637 70.0
RcHm_v2.0_Chr4g0431561 Rosa chinensis HOM05D003777 ORTHO05D004690 1.2e-230 803.5 670 69.4
RcHm_v2.0_Chr4g0431581 Rosa chinensis HOM05D003777 ORTHO05D004690 2.1e-230 802.7 670 69.3
Eucgr.B03455 Eucalyptus grandis HOM05D003777 ORTHO05D004690 1.3e-229 800.0 674 66.8
A07p34190 Brassica napus HOM05D003777 ORTHO05D004690 3.9e-229 798.5 670 67.0
Carub.0002s1406 Capsella rubella HOM05D003777 ORTHO05D004690 3.3e-228 795.4 670 66.4
FvH4_4g24580 Fragaria vesca HOM05D003777 ORTHO05D004690 1.3e-227 793.5 671 68.0
FAN12G3799 Fragaria x ananassa HOM05D003777 ORTHO05D004690 1.3e-227 793.5 671 68.0
Rhsim12G0035800 Rhododendron simsii HOM05D003777 ORTHO05D004690 2.1e-227 792.7 756 61.4
FAN07G0030 Fragaria x ananassa HOM05D003777 ORTHO05D004690 1.1e-226 790.4 671 67.7
FAN22G1648 Fragaria x ananassa HOM05D003777 ORTHO05D004690 1.1e-223 780.4 671 67.1
Ah.10g034950 Amaranthus hybridus HOM05D003777 ORTHO05D004690 4.2e-223 778.5 636 67.6
Prupe.1G234800 Prunus persica HOM05D003777 ORTHO05D004690 7.1e-223 777.7 572 75.0
FAN17G2971 Fragaria x ananassa HOM05D003777 ORTHO05D004690 1.2e-222 776.9 651 68.0
Ciclev10030955m.g Citrus clementina HOM05D003777 ORTHO05D004690 1.7e-221 773.1 635 70.2
Migut.D00587 Erythranthe guttata HOM05D003777 ORTHO05D004690 1.3e-219 766.9 605 70.4
HanXRQChr04g0126141 Helianthus annuus HOM05D003777 ORTHO05D004690 1.1e-218 763.8 628 68.0
AUR62017151 Chenopodium quinoa HOM05D003777 ORTHO05D004690 1.5e-217 760.0 679 63.8
COL.COLO4_23602 Corchorus olitorius HOM05D003777 ORTHO05D004690 1.6e-214 750.0 668 64.2
TPR.G27143 Trifolium pratense HOM05D003777 ORTHO05D004690 2.7e-214 749.2 554 71.3
EL10Ac9g22111 Beta vulgaris HOM05D003777 ORTHO05D004690 4.6e-214 748.4 676 63.9
AT1G67650 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 1.8e-213 746.5 675 62.5
CSS0018349 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 3.0e-213 745.7 513 76.4
AUR62035656 Chenopodium quinoa HOM05D003777 ORTHO05D004690 8.7e-213 744.2 675 62.5
Nitab4.5_0002757g0020 Nicotiana tabacum HOM05D003777 ORTHO05D004690 5.3e-210 734.9 536 74.8
Actinidia30683 Actinidia chinensis HOM05D003777 ORTHO05D004690 1.0e-208 730.7 659 65.3
unitig_744.g24046 Utricularia gibba HOM05D003777 ORTHO05D004690 5.5e-207 724.9 683 61.8
MBI11_g31858_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 1.9e-204 716.5 687 61.9
BraA07t31048Z Brassica rapa HOM05D003777 ORTHO05D004690 2.1e-203 713.0 562 68.3
HPP92_012793 Vanilla planifolia HOM05D003777 ORTHO05D004690 1.2e-201 707.2 676 60.1
Os01g0889000 Oryza sativa ssp. japonica HOM05D003777 ORTHO05D004690 3.2e-199 699.1 659 62.2
CDE07G0923 Ceratophyllum demersum HOM05D003777 ORTHO05D004690 1.0e-197 694.1 675 59.0
BcaB03g15368 Brassica carinata HOM05D003777 ORTHO05D004690 5.1e-197 691.8 665 60.6
ATR0824G106 Amborella trichopoda HOM05D003777 ORTHO05D004690 2.5e-196 689.5 658 59.7
Sed0021346 Sechium edule HOM05D003777 ORTHO05D004690 3.4e-193 679.1 552 69.0
PGSC0003DMG400032494 Solanum tuberosum HOM05D003777 ORTHO05D004690 2.5e-183 646.4 477 72.5
Sc04g0009890 Simmondsia chinensis HOM05D003777 ORTHO05D004690 5.1e-181 638.6 516 68.8
Carub.0002s1402 Capsella rubella HOM05D003777 ORTHO05D004690 1.7e-179 633.6 544 65.3
Nitab4.5_0001925g0190 Nicotiana tabacum HOM05D003777 ORTHO05D004690 2.8e-179 632.9 621 59.9
AL2G26340 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 1.6e-177 627.1 638 57.8
Lj2C633G4 Lonicera japonica HOM05D003777 ORTHO05D004690 4.8e-171 605.5 506 65.2
BolC2t08468H Brassica oleracea HOM05D003777 ORTHO05D004690 1.1e-167 594.3 620 56.6
Lalb_Chr12g0206451 Lupinus albus HOM05D003777 ORTHO05D004690 2.1e-166 590.1 457 72.9
SHI17928 Sapria himalayana HOM05D003777 ORTHO05D004690 6.8e-165 585.1 633 56.2
Lalb_Chr12g0206431 Lupinus albus HOM05D003777 ORTHO05D004690 3.7e-163 579.3 450 72.7
C06p38540 Brassica napus HOM05D003777 ORTHO05D004690 5.7e-156 555.4 451 67.2
CSS0034811 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 1.1e-151 541.2 450 72.2
Mapoly0007s0138 Marchantia polymorpha HOM05D003777 ORTHO05D004690 2.8e-150 536.6 648 47.7
Zm00001eb145240 Zea mays HOM05D003777 ORTHO05D004690 7.0e-146 521.9 494 61.3
SEGI_14731 Sequoiadendron giganteum HOM05D003777 ORTHO05D004690 8.6e-144 515.0 552 53.4
Pp3c19_7700 Physcomitrium patens HOM05D003777 ORTHO05D004690 3.6e-142 509.6 676 44.4
BolC6t38947H Brassica oleracea HOM05D003777 ORTHO05D004690 1.2e-132 478.0 409 65.3
Lalb_Chr12g0206401 Lupinus albus HOM05D003777 ORTHO05D004690 8.6e-128 461.8 336 73.5
SMO356G0370 Selaginella moellendorffii HOM05D003777 ORTHO05D004690 4.1e-122 443.0 589 45.8
C02p23330 Brassica napus HOM05D003777 ORTHO05D004690 9.6e-119 431.8 423 57.9
TAR622G1358 Trochodendron aralioides HOM05D003777 ORTHO05D004690 2.4e-117 427.2 337 71.5
CBR_g26341 Chara braunii HOM05D003777 ORTHO05D004690 3.3e-111 406.8 654 41.4
AUR62017138 Chenopodium quinoa HOM05D003777 ORTHO05D004690 3.9e-88 330.1 355 54.6
CSS0039153 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 1.4e-72 278.5 199 72.4
Oeu007469.1 Olea europaea HOM05D003777 ORTHO05D004690 2.2e-70 271.2 325 53.5
BraA07t30871Z Brassica rapa HOM05D003777 ORTHO05D004690 3.7e-70 270.4 209 68.4
MCO13G157 Micromonas commoda HOM05D003777 ORTHO05D004690 1.8e-69 268.1 639 33.2
PGSC0003DMG400024128 Solanum tuberosum HOM05D003777 ORTHO05D004690 7.7e-68 262.7 186 73.7
ECA238G3243 Erigeron canadensis HOM05D003777 ORTHO05D004690 1.1e-66 258.8 224 60.3
Hma1.2p1_0075F.1_g039220 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 8.2e-62 242.7 245 57.1
Nn4g21997 Nelumbo nucifera HOM05D003777 ORTHO05D004690 1.8e-61 241.5 171 80.7
Cre03.g182500 Chlamydomonas reinhardtii HOM05D003777 ORTHO05D004690 7.0e-61 239.6 709 31.6
TAR622G0547 Trochodendron aralioides HOM05D003777 ORTHO05D004690 1.2e-57 228.8 170 68.8
PGSC0003DMG400017991 Solanum tuberosum HOM05D003777 ORTHO05D004690 1.6e-57 228.4 174 72.4
Solyc10g044443.1 Solanum lycopersicum HOM05D003777 ORTHO05D004690 4.5e-52 210.3 177 62.1
Psat3g102200 Pisum sativum HOM05D003777 ORTHO05D004690 7.7e-52 209.5 155 67.1
Psat5g044680 Pisum sativum HOM05D003777 ORTHO05D004690 2.2e-51 208.0 155 67.1
PGSC0003DMG400024126 Solanum tuberosum HOM05D003777 ORTHO05D004690 1.1e-50 205.7 168 69.0
Sopen01g018830 Solanum pennellii HOM05D003777 ORTHO05D004690 3.6e-49 200.7 177 59.3
PRCOL_00006597 Prasinoderma coloniale HOM05D003777 ORTHO05D004690 8.0e-49 199.5 643 31.4
Aqoxy6G02118 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 2.0e-44 184.9 127 74.8
Sopen01g018820 Solanum pennellii HOM05D003777 ORTHO05D004690 8.5e-43 179.5 174 59.2
Haze_17766 Corylus avellana HOM05D001576 ORTHO05D000401 7.2e-42 176.4 117 76.1
Aqoxy6G02120 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 9.2e-37 159.5 136 69.1
CAN.G1295.1 Capsicum annuum HOM05D003777 ORTHO05D004690 3.5e-36 157.5 150 58.7
Psat3g103880 Pisum sativum HOM05D003777 ORTHO05D004690 9.5e-34 149.4 189 47.1
Lalb_Chr12g0206411 Lupinus albus HOM05D003777 ORTHO05D004690 2.2e-30 138.3 92 76.1
Lalb_Chr12g0206441 Lupinus albus HOM05D003777 ORTHO05D004690 2.2e-30 138.3 92 76.1
Lalb_Chr12g0206461 Lupinus albus HOM05D003777 ORTHO05D004690 2.2e-30 138.3 92 76.1
CAN.G1310.4 Capsicum annuum HOM05D003777 ORTHO05D004690 1.0e-27 129.4 92 72.8
Lalb_Chr12g0206421 Lupinus albus HOM05D003777 ORTHO05D004690 1.7e-27 128.6 111 59.5
Aqoxy6G02119 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 2.8e-25 121.3 97 70.1
C06p38550 Brassica napus HOM05D003777 ORTHO05D004690 7.0e-21 106.7 99 65.7
TAR636G3069 Trochodendron aralioides HOM05D003847 ORTHO05D004976 1.0e-19 102.8 96 55.2
TAR622G0255 Trochodendron aralioides HOM05D003777 ORTHO05D004690 5.0e-19 100.5 91 62.6
MBI11_g11081_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 8.6e-19 99.8 99 53.5
MBI11_g45427_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 5.6e-18 97.1 96 54.2
BcaC03g14865 Brassica carinata HOM05D003777 ORTHO05D004690 1.2e-17 95.9 76 64.5
Solyc01g047580.1 Solanum lycopersicum HOM05D003777 ORTHO05D004690 1.1e-16 92.8 118 50.0
BcaC03g14858 Brassica carinata HOM05D003777 ORTHO05D004690 2.6e-15 88.2 63 68.3
PGSC0003DMG400024133 Solanum tuberosum HOM05D003777 ORTHO05D004690 1.7e-14 85.5 58 72.4
SHI17930 Sapria himalayana HOM05D003777 ORTHO05D012379 2.4e-13 81.6 78 52.6
Nitab4.5_0004629g0100 Nicotiana tabacum HOM05D003777 ORTHO05D004690 2.1e-12 78.6 49 73.5
Psat4g130680 Pisum sativum HOM05D003777 ORTHO05D037365 3.5e-12 77.8 99 41.4
SEGI_18986 Sequoiadendron giganteum HOM05D003777 ORTHO05D000001 3.5e-12 77.8 82 48.8
Cfa022335 Carpinus fangiana HOM05D003777 ORTHO05D004690 3.6e-09 67.8 625 23.2
CAN.G151.20 Capsicum annuum HOM05D000329 ORTHO05D000833 3.1e-08 64.7 48 68.8
Hma1.2p1_0214F.1_g090690 Hydrangea macrophylla HOM05D003777 ORTHO05D012379 1.2e-07 62.8 49 67.3
Actinidia09282 Actinidia chinensis HOM05D003777 ORTHO05D004690 2.2e-06 58.5 345 28.4


User provided reference genes

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