Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G078800 Populus trichocarpa HOM05D005445 ORTHO05D007043 6.7e-165 583.9 296 100.0
Sabra06G0059700 Salix brachista HOM05D005445 ORTHO05D007043 2.4e-138 495.7 325 81.2
Thecc.09G196900 Theobroma cacao HOM05D005445 ORTHO05D007043 9.5e-127 457.2 321 74.1
Prupe.1G063800 Prunus persica HOM05D005445 ORTHO05D007043 6.4e-123 444.5 321 72.9
Ciclev10008923m.g Citrus clementina HOM05D005445 ORTHO05D007043 2.4e-122 442.6 321 72.9
MD16G1238000 Malus domestica HOM05D005445 ORTHO05D007043 1.7e-120 436.4 321 70.7
Gohir.A08G017100 Gossypium hirsutum HOM05D005445 ORTHO05D007043 3.9e-120 435.3 319 71.5
Cpa.g.sc115.19 Carica papaya HOM05D005445 ORTHO05D007043 1.5e-119 433.3 312 71.8
Gorai.004G024500 Gossypium raimondii HOM05D005445 ORTHO05D007043 3.3e-119 432.2 324 70.4
Manes.02G221800 Manihot esculenta HOM05D005445 ORTHO05D007043 9.5e-119 430.6 303 72.6
Gohir.D08G027500 Gossypium hirsutum HOM05D005445 ORTHO05D007043 1.6e-118 429.9 319 70.8
Atru.chr7.1013 Acer truncatum HOM05D005445 ORTHO05D007043 2.8e-118 429.1 320 71.9
RcHm_v2.0_Chr4g0397601 Rosa chinensis HOM05D005445 ORTHO05D007043 1.8e-117 426.4 320 69.7
FvH4_4g06040 Fragaria vesca HOM05D005445 ORTHO05D007043 2.3e-117 426.0 319 69.3
TWI63G1185 Tripterygium wilfordii HOM05D005445 ORTHO05D007043 8.9e-117 424.1 319 69.6
CiPaw.15G161100 Carya illinoinensis HOM05D005445 ORTHO05D007043 4.4e-116 421.8 321 68.2
CANSAT80G1260 Cannabis sativa HOM05D005445 ORTHO05D007043 5.8e-116 421.4 322 69.3
FAN17G2613 Fragaria x ananassa HOM05D005445 ORTHO05D007043 9.8e-116 420.6 319 68.7
Glyma.05G220700 Glycine max HOM05D005445 ORTHO05D007043 1.3e-115 420.2 314 71.3
QL11p008649 Quercus lobata HOM05D005445 ORTHO05D007043 2.9e-115 419.1 360 62.5
GSVIVG01032266001 Vitis vinifera HOM05D005445 ORTHO05D007043 2.9e-115 419.1 320 68.1
Glyma.08G027200 Glycine max HOM05D005445 ORTHO05D007043 4.9e-115 418.3 322 68.9
Dinv12613 Davidia involucrata HOM05D005445 ORTHO05D007043 6.4e-115 417.9 321 67.0
Duzib168G0912 Durio zibethinus HOM05D005445 ORTHO05D007043 7.0e-114 414.5 335 66.3
Actinidia07565 Actinidia chinensis HOM05D005445 ORTHO05D007043 2.7e-113 412.5 321 67.9
Lj4g0004845 Lotus japonicus HOM05D005445 ORTHO05D007043 7.8e-113 411.0 319 68.7
arahy.Tifrunner.gnm1.ann1.HNJF4G Arachis hypogaea HOM05D005445 ORTHO05D007043 1.3e-112 410.2 321 69.2
CSS0000968 Camellia sinensis var. sinensis HOM05D005445 ORTHO05D007043 1.3e-112 410.2 325 66.8
Solyc07g017400.3 Solanum lycopersicum HOM05D005445 ORTHO05D007043 1.7e-112 409.8 319 66.8
Ca_17431_v3 Cicer arietinum L. HOM05D005445 ORTHO05D007043 5.0e-112 408.3 321 69.5
Ca_17440_v3 Cicer arietinum L. HOM05D005445 ORTHO05D007043 5.0e-112 408.3 321 69.5
Hma1.2p1_0314F.1_g122070 Hydrangea macrophylla HOM05D005445 ORTHO05D007043 8.6e-112 407.5 321 66.0
Sopen07g006100 Solanum pennellii HOM05D005445 ORTHO05D007043 8.6e-112 407.5 319 66.5
Medtr8g101230 Medicago truncatula HOM05D005445 ORTHO05D007043 1.2e-110 403.7 321 68.2
Rhsim04G0099700 Rhododendron simsii HOM05D005445 ORTHO05D007043 4.7e-110 401.7 319 66.5
TPR.G25470 Trifolium pratense HOM05D005445 ORTHO05D007043 8.1e-110 401.0 320 68.1
Cfa020755 Carpinus fangiana HOM05D005445 ORTHO05D007043 3.1e-109 399.1 305 69.2
Lalb_Chr09g0332001 Lupinus albus HOM05D005445 ORTHO05D007043 3.1e-109 399.1 318 67.3
CiPaw.16G104300 Carya illinoinensis HOM05D005445 ORTHO05D007043 5.2e-109 398.3 319 66.8
Psat7g020920 Pisum sativum HOM05D005445 ORTHO05D007043 5.2e-109 398.3 321 67.0
FAN07G1413 Fragaria x ananassa HOM05D005445 ORTHO05D007043 6.8e-109 397.9 318 67.0
CAN.G146.2 Capsicum annuum HOM05D005445 ORTHO05D007043 1.5e-108 396.7 319 64.9
Nitab4.5_0000899g0030 Nicotiana tabacum HOM05D005445 ORTHO05D007043 1.5e-108 396.7 310 65.8
Nitab4.5_0004036g0030 Nicotiana tabacum HOM05D005445 ORTHO05D007043 7.5e-108 394.4 306 66.7
MSTRG.26517 Avicennia marina HOM05D005445 ORTHO05D007043 1.3e-107 393.7 320 63.1
VMungo0251G0086 Vigna mungo HOM05D005445 ORTHO05D007043 4.9e-107 391.7 322 66.1
TAR383G0382 Trochodendron aralioides HOM05D005445 ORTHO05D007043 1.9e-106 389.8 327 62.4
arahy.Tifrunner.gnm1.ann1.K4ERET Arachis hypogaea HOM05D005445 ORTHO05D007043 3.2e-106 389.0 341 63.9
SGA_v2.0_scaffold485G52365 Striga asiatica HOM05D005445 ORTHO05D007043 6.0e-105 384.8 322 62.7
MELO3C003927.2 Cucumis melo HOM05D005445 ORTHO05D007043 1.7e-104 383.3 317 65.0
Phvul.002G302400 Phaseolus vulgaris HOM05D005445 ORTHO05D007043 2.3e-104 382.9 319 65.8
Cc00_g00070 Coffea canephora HOM05D005445 ORTHO05D007043 3.9e-104 382.1 322 62.4
TAR383G1024 Trochodendron aralioides HOM05D005445 ORTHO05D007043 3.9e-104 382.1 317 62.8
Nn8g41135 Nelumbo nucifera HOM05D005445 ORTHO05D007043 6.6e-104 381.3 325 62.5
CsaV3_2G009110 Cucumis sativus L. HOM05D005445 ORTHO05D007043 8.6e-104 380.9 318 64.8
DCAR_020460 Daucus carota HOM05D005445 ORTHO05D007043 3.3e-103 379.0 320 62.2
SalBow5G4362 Salvia bowleyana HOM05D005445 ORTHO05D007043 1.6e-102 376.7 324 62.0
Sp4g09300 Schrenkiella parvula HOM05D005445 ORTHO05D007043 2.1e-102 376.3 300 67.0
THA.LOC104815270 Tarenaya hassleriana HOM05D005445 ORTHO05D007043 8.9e-101 370.9 290 67.9
Aqoxy7G02630 Aquilegia oxysepala HOM05D005445 ORTHO05D007043 1.5e-100 370.2 319 61.8
ClCG11G011350 Citrullus lanatus HOM05D005445 ORTHO05D007043 2.6e-100 369.4 318 63.8
AT2G26590 Arabidopsis thaliana HOM05D005445 ORTHO05D007043 5.8e-100 368.2 300 66.7
Hund03231 Selenicereus undatus HOM05D005445 ORTHO05D007043 7.6e-100 367.9 324 60.8
CARHR118490 Cardamine hirsuta HOM05D005445 ORTHO05D007043 9.9e-100 367.5 300 66.3
MBI13_g31572_MAGBIO Magnolia biondii HOM05D005445 ORTHO05D007043 9.9e-100 367.5 317 63.7
ECA234G2663 Erigeron canadensis HOM05D005445 ORTHO05D007043 2.9e-99 365.9 320 60.6
Oeu028820.1 Olea europaea HOM05D005445 ORTHO05D007043 1.4e-98 363.6 300 62.7
AL4G19530 Arabidopsis lyrata HOM05D005445 ORTHO05D007043 2.4e-98 362.8 299 65.6
BcaB01g03027 Brassica carinata HOM05D005445 ORTHO05D007043 7.1e-98 361.3 300 64.7
Carub.0004s0844 Capsella rubella HOM05D005445 ORTHO05D007043 1.6e-97 360.1 299 64.9
Duzib170G0675 Durio zibethinus HOM05D005445 ORTHO05D007043 7.8e-97 357.8 324 61.1
BraA03t11899Z Brassica rapa HOM05D005445 ORTHO05D007043 1.3e-96 357.1 303 63.7
BcaC01g04909 Brassica carinata HOM05D005445 ORTHO05D007043 3.0e-96 355.9 300 63.0
Sed0003073 Sechium edule HOM05D005445 ORTHO05D007043 3.0e-96 355.9 299 63.9
BolC3t15563H Brassica oleracea HOM05D005445 ORTHO05D007043 1.1e-95 354.0 303 63.4
Thhalv10000977m.g Eutrema salsugineum HOM05D005445 ORTHO05D007043 1.1e-95 354.0 296 65.5
CDE06G0990 Ceratophyllum demersum HOM05D005445 ORTHO05D007043 1.9e-95 353.2 321 60.1
C03p32210 Brassica napus HOM05D005445 ORTHO05D007043 2.5e-95 352.8 300 63.0
PGR142G0598 Punica granatum HOM05D005445 ORTHO05D007043 3.3e-95 352.4 303 64.4
Eucgr.C00062 Eucalyptus grandis HOM05D005445 ORTHO05D007043 8.1e-94 347.8 310 60.3
Thhalv10016855m.g Eutrema salsugineum HOM05D005445 ORTHO05D007043 1.1e-93 347.4 295 64.4
Lsat_1_v5_gn_5_80620 Lactuca sativa HOM05D005445 ORTHO05D007043 1.4e-93 347.1 311 60.5
HPP92_028347 Vanilla planifolia HOM05D005445 ORTHO05D007043 3.1e-93 345.9 323 57.0
Aa31LG5G9140 Aethionema arabicum HOM05D005445 ORTHO05D007043 1.5e-92 343.6 306 61.4
Migut.L01918 Erythranthe guttata HOM05D005445 ORTHO05D007043 1.5e-92 343.6 299 60.2
A03p26880 Brassica napus HOM05D005445 ORTHO05D007043 4.4e-92 342.0 303 62.0
ATR0626G233 Amborella trichopoda HOM05D005445 ORTHO05D007043 2.9e-91 339.3 326 56.4
HanXRQChr10g0309531 Helianthus annuus HOM05D005445 ORTHO05D007043 1.4e-90 337.0 299 60.9
Lj5C772G2 Lonicera japonica HOM05D005445 ORTHO05D007043 7.1e-90 334.7 248 69.0
PSO063G4940 Papaver somniferum HOM05D005445 ORTHO05D007043 2.1e-86 323.2 317 55.8
Os05g0594800 Oryza sativa ssp. japonica HOM05D005445 ORTHO05D007043 3.6e-86 322.4 311 56.9
PSO170G6081 Papaver somniferum HOM05D005445 ORTHO05D007043 2.4e-85 319.7 315 55.6
Zm00001eb297230 Zea mays HOM05D005445 ORTHO05D007043 1.3e-83 313.9 322 53.7
Ah.10g032730 Amaranthus hybridus HOM05D005445 ORTHO05D007043 3.2e-82 309.3 322 55.0
Peaxi162Scf01184g00140 Petunia axillaris HOM05D005445 ORTHO05D007043 7.1e-82 308.1 339 51.3
unitig_85.g27245 Utricularia gibba HOM05D005445 ORTHO05D007043 7.1e-82 308.1 297 57.2
vmacro20760 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 1.5e-79 300.4 375 48.3
EL10Ac2g03624 Beta vulgaris HOM05D005445 ORTHO05D007043 2.1e-78 296.6 352 49.7
SEGI_14233 Sequoiadendron giganteum HOM05D005445 ORTHO05D007043 4.0e-77 292.4 323 50.5
AUR62027984 Chenopodium quinoa HOM05D005445 ORTHO05D007043 1.5e-76 290.4 353 51.0
Lalb_Chr05g0223811 Lupinus albus HOM05D005445 ORTHO05D007043 9.9e-76 287.7 242 63.6
AUR62020729 Chenopodium quinoa HOM05D005445 ORTHO05D007043 1.6e-73 280.4 325 50.8
Dinv26479 Davidia involucrata HOM05D005445 ORTHO05D007043 2.6e-68 263.1 223 63.7
COL.COLO4_23410 Corchorus olitorius HOM05D005445 ORTHO05D007043 1.9e-63 246.9 150 78.7
Hma1.2p1_0314F.1_g122080 Hydrangea macrophylla HOM05D005445 ORTHO05D007043 2.1e-62 243.4 221 61.1
Pp3c21_370 Physcomitrium patens HOM05D005445 ORTHO05D007043 1.5e-60 237.3 329 45.3
Dinv00323 Davidia involucrata HOM05D005445 ORTHO05D007043 2.3e-56 223.4 198 62.1
SMO116G0379 Selaginella moellendorffii HOM05D005445 ORTHO05D007043 1.1e-55 221.1 279 45.9
Sc14g0007060 Simmondsia chinensis HOM05D005445 ORTHO05D007043 7.4e-55 218.4 226 54.9
Haze_19097 Corylus avellana HOM05D005445 ORTHO05D007043 1.1e-50 204.5 200 58.0
Mapoly0011s0124 Marchantia polymorpha HOM05D005445 ORTHO05D007043 1.6e-49 200.7 330 41.2
CDE02G2220 Ceratophyllum demersum HOM05D005445 ORTHO05D007043 5.7e-47 192.2 227 53.3
CBR_g28055 Chara braunii HOM05D005445 ORTHO05D007043 1.5e-44 184.1 343 38.2
vmacro10242 Vaccinium macrocarpon HOM05D002150 ORTHO05D002191 1.0e-32 144.8 91 73.6
vmacro07726 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 4.0e-32 142.9 90 73.3
HPP92_015797 Vanilla planifolia HOM05D005445 ORTHO05D007043 5.7e-31 139.0 268 36.6
C03p32230 Brassica napus HOM05D005445 ORTHO05D007043 7.5e-23 112.1 75 76.0
BolC3t15564H Brassica oleracea HOM05D005445 ORTHO05D007043 7.5e-23 112.1 75 76.0
MD13G1232400 Malus domestica HOM05D005445 ORTHO05D007043 2.2e-22 110.5 163 47.9
Sc14g0006300 Simmondsia chinensis HOM05D005445 ORTHO05D007043 2.8e-22 110.2 81 69.1
Lalb_Chr05g0223801 Lupinus albus HOM05D005445 ORTHO05D007043 1.3e-19 101.3 63 76.2
HanXRQChr09g0242991 Helianthus annuus HOM05D005445 ORTHO05D007043 2.8e-17 93.6 86 61.6
MCO02G027 Micromonas commoda HOM05D005445 ORTHO05D007043 2.8e-17 93.6 345 25.5
SHI03135 Sapria himalayana HOM05D005445 ORTHO05D007043 3.4e-15 86.7 52 75.0
SGA_v2.0_scaffold21G09605 Striga asiatica HOM05D005445 ORTHO05D007043 7.5e-15 85.5 157 36.9
Cre11.g469450 Chlamydomonas reinhardtii HOM05D005445 ORTHO05D007043 2.2e-14 84.0 343 26.2
Potri.003G027722 Populus trichocarpa HOM05D005445 ORTHO05D007043 2.2e-14 84.0 62 72.6
vmacro04822 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 9.2e-13 78.6 43 81.4
Potri.003G027520 Populus trichocarpa HOM05D005445 ORTHO05D007043 1.7e-11 74.3 49 73.5
PRCOL_00002868 Prasinoderma coloniale HOM05D004630 ORTHO05D005727 5.0e-11 72.8 104 36.5
TPR.G25462 Trifolium pratense HOM05D000254 ORTHO05D000165 1.2e-09 68.2 116 37.9
TPR.G25476 Trifolium pratense HOM05D000254 ORTHO05D000165 2.9e-06 57.0 129 34.9
HanXRQChr09g0242981 Helianthus annuus HOM05D005445 ORTHO05D007043 3.7e-06 56.6 54 61.1
HanXRQChr09g0248391 Helianthus annuus HOM05D005445 ORTHO05D007043 3.7e-06 56.6 54 61.1
HanXRQChr13g0395691 Helianthus annuus HOM05D005445 ORTHO05D007043 3.7e-06 56.6 54 61.1


User provided reference genes

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