Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G051300 Populus trichocarpa HOM05D005933 ORTHO05D007366 4.0e-257 891.0 459 100.0
Sabra06G0036000 Salix brachista HOM05D005933 ORTHO05D007366 5.8e-232 807.4 454 90.1
Manes.09G022000 Manihot esculenta HOM05D005933 ORTHO05D007366 6.9e-185 651.0 448 72.8
QL07p000555 Quercus lobata HOM05D005933 ORTHO05D007366 3.2e-174 615.5 463 68.3
QL07p000522 Quercus lobata HOM05D005933 ORTHO05D007366 1.2e-173 613.6 461 67.9
Haze_19854 Corylus avellana HOM05D005933 ORTHO05D007366 7.9e-173 610.9 451 67.6
RcHm_v2.0_Chr3g0482381 Rosa chinensis HOM05D005933 ORTHO05D007366 5.2e-172 608.2 471 67.1
CiPaw.08G166600 Carya illinoinensis HOM05D005933 ORTHO05D007366 4.4e-171 605.1 464 65.5
TWI74G0083 Tripterygium wilfordii HOM05D005933 ORTHO05D007366 2.8e-170 602.4 468 65.2
Duzib093G2041 Durio zibethinus HOM05D005933 ORTHO05D007366 3.7e-170 602.1 462 66.2
FvH4_6g23820 Fragaria vesca HOM05D005933 ORTHO05D007366 2.6e-168 595.9 461 64.9
Ciclev10004945m.g Citrus clementina HOM05D005933 ORTHO05D007366 3.5e-168 595.5 461 65.7
FAN05G5216 Fragaria x ananassa HOM05D005933 ORTHO05D007366 2.2e-167 592.8 464 64.4
MD12G1074000 Malus domestica HOM05D005933 ORTHO05D007366 2.2e-167 592.8 469 66.3
FAN02G2268 Fragaria x ananassa HOM05D005933 ORTHO05D007366 2.9e-167 592.4 464 64.4
CANSAT78G0457 Cannabis sativa HOM05D005933 ORTHO05D007366 5.5e-166 588.2 474 65.4
arahy.Tifrunner.gnm1.ann1.EHL0AN Arachis hypogaea HOM05D005933 ORTHO05D007366 2.1e-165 586.3 460 64.3
arahy.Tifrunner.gnm1.ann1.T110QE Arachis hypogaea HOM05D005933 ORTHO05D007366 2.1e-165 586.3 460 64.1
Thecc.05G153300 Theobroma cacao HOM05D005933 ORTHO05D007366 6.1e-165 584.7 464 64.2
GSVIVG01033275001 Vitis vinifera HOM05D005933 ORTHO05D007366 6.1e-165 584.7 472 63.6
Lj1g0013042 Lotus japonicus HOM05D005933 ORTHO05D007366 8.0e-165 584.3 461 64.6
Actinidia39225 Actinidia chinensis HOM05D005933 ORTHO05D007366 9.7e-163 577.4 476 63.4
Glyma.03G136900 Glycine max HOM05D005933 ORTHO05D007366 2.2e-162 576.2 461 63.8
Medtr7g091500 Medicago truncatula HOM05D005933 ORTHO05D007366 2.2e-162 576.2 461 64.0
Gohir.D11G173800 Gossypium hirsutum HOM05D005933 ORTHO05D007366 1.1e-161 573.9 461 63.3
COL.COLO4_28284 Corchorus olitorius HOM05D005933 ORTHO05D007366 1.4e-161 573.5 456 64.0
Gorai.007G186200 Gossypium raimondii HOM05D005933 ORTHO05D007366 1.4e-161 573.5 461 63.3
Phvul.001G132100 Phaseolus vulgaris HOM05D005933 ORTHO05D007366 7.0e-161 571.2 459 62.7
Lalb_Chr25g0287121 Lupinus albus HOM05D005933 ORTHO05D007366 1.6e-160 570.1 457 63.9
Cpa.g.sc92.52 Carica papaya HOM05D005933 ORTHO05D007366 7.7e-160 567.8 455 64.0
Ca_08457_v3 Cicer arietinum L. HOM05D005933 ORTHO05D007366 7.7e-160 567.8 461 62.7
Actinidia09329 Actinidia chinensis HOM05D005933 ORTHO05D007366 1.0e-159 567.4 477 61.0
FAN14G1069 Fragaria x ananassa HOM05D005933 ORTHO05D007366 2.9e-159 565.8 440 64.3
Gohir.A11G167500 Gossypium hirsutum HOM05D005933 ORTHO05D007366 5.0e-159 565.1 461 62.3
Hma1.2p1_2002F.1_g310760 Hydrangea macrophylla HOM05D005933 ORTHO05D007366 1.2e-157 560.5 473 60.7
Solyc10g080110.3 Solanum lycopersicum HOM05D005933 ORTHO05D007366 4.4e-155 552.0 480 59.2
vmacro07854 Vaccinium macrocarpon HOM05D005933 ORTHO05D007366 4.4e-155 552.0 503 57.1
CARHR244310 Cardamine hirsuta HOM05D005933 ORTHO05D007366 5.7e-155 551.6 458 60.3
PGSC0003DMG400023688 Solanum tuberosum HOM05D005933 ORTHO05D007366 5.7e-155 551.6 482 58.5
Sopen10g030730 Solanum pennellii HOM05D005933 ORTHO05D007366 9.8e-155 550.8 480 59.4
Eucgr.A02347 Eucalyptus grandis HOM05D005933 ORTHO05D007366 1.3e-154 550.4 463 61.1
Sp7g34530 Schrenkiella parvula HOM05D005933 ORTHO05D007366 2.8e-154 549.3 462 59.7
PGR004G0721 Punica granatum HOM05D005933 ORTHO05D007366 3.7e-154 548.9 469 63.1
THA.LOC104811196 Tarenaya hassleriana HOM05D005933 ORTHO05D007366 4.8e-154 548.5 462 60.2
AT4G35910 Arabidopsis thaliana HOM05D005933 ORTHO05D007366 8.3e-154 547.7 461 59.9
CSS0022562 Camellia sinensis var. sinensis HOM05D005933 ORTHO05D007366 8.3e-154 547.7 470 60.0
AL7G15130 Arabidopsis lyrata HOM05D005933 ORTHO05D007366 3.1e-153 545.8 457 59.1
Thhalv10025158m.g Eutrema salsugineum HOM05D005933 ORTHO05D007366 5.4e-153 545.0 459 59.9
Psat3g072720 Pisum sativum HOM05D005933 ORTHO05D007366 2.7e-152 542.7 446 62.1
A01p02040 Brassica napus HOM05D005933 ORTHO05D007366 7.7e-152 541.2 462 60.2
Rhsim03G0022400 Rhododendron simsii HOM05D005933 ORTHO05D007366 1.0e-151 540.8 464 58.6
Lsat_1_v5_gn_8_81281 Lactuca sativa HOM05D005933 ORTHO05D007366 1.7e-151 540.0 469 58.6
Carub.0007s0431 Capsella rubella HOM05D005933 ORTHO05D007366 2.2e-151 539.7 462 59.5
C01p02220 Brassica napus HOM05D005933 ORTHO05D007366 6.5e-151 538.1 462 60.2
BraA01t00193Z Brassica rapa HOM05D005933 ORTHO05D007366 8.5e-151 537.7 462 60.2
Peaxi162Scf00618g00022 Petunia axillaris HOM05D005933 ORTHO05D007366 1.1e-150 537.3 469 58.4
BolC1t00214H Brassica oleracea HOM05D005933 ORTHO05D007366 1.5e-150 537.0 462 60.2
Rhsim03G0021100 Rhododendron simsii HOM05D005933 ORTHO05D007366 2.5e-150 536.2 463 58.1
Cc06_g17560 Coffea canephora HOM05D005933 ORTHO05D007366 4.2e-150 535.4 491 57.8
HanXRQChr09g0252561 Helianthus annuus HOM05D005933 ORTHO05D007366 7.2e-150 534.6 467 59.1
Aa31LG6G13690 Aethionema arabicum HOM05D005933 ORTHO05D007366 4.7e-149 531.9 460 57.8
Lju124A41G42 Lonicera japonica HOM05D005933 ORTHO05D007366 6.1e-149 531.6 429 62.2
DCAR_009061 Daucus carota HOM05D005933 ORTHO05D007366 8.0e-149 531.2 481 56.3
TPR.G854 Trifolium pratense HOM05D005933 ORTHO05D007366 1.0e-148 530.8 399 66.7
MSTRG.19860 Avicennia marina HOM05D005933 ORTHO05D007366 1.4e-148 530.4 481 58.6
Oeu017944.1 Olea europaea HOM05D005933 ORTHO05D007366 2.3e-148 529.6 446 60.3
Sed0001053 Sechium edule HOM05D005933 ORTHO05D007366 2.3e-148 529.6 465 58.7
VMungo1383G3081 Vigna mungo HOM05D005933 ORTHO05D007366 5.2e-148 528.5 560 51.8
MELO3C009712.2 Cucumis melo HOM05D005933 ORTHO05D007366 3.4e-147 525.8 478 57.5
ECA236G1702 Erigeron canadensis HOM05D005933 ORTHO05D007366 9.8e-147 524.2 461 59.2
Nitab4.5_0008648g0010 Nicotiana tabacum HOM05D005933 ORTHO05D007366 2.2e-146 523.1 499 54.5
CsaV3_3G039700 Cucumis sativus L. HOM05D005933 ORTHO05D007366 8.3e-146 521.2 476 56.5
Migut.J01758 Erythranthe guttata HOM05D005933 ORTHO05D007366 1.3e-143 513.8 479 56.4
BcaNung03520 Brassica carinata HOM05D005933 ORTHO05D007366 5.0e-143 511.9 459 58.2
Nitab4.5_0009442g0020 Nicotiana tabacum HOM05D005933 ORTHO05D007366 5.0e-143 511.9 467 56.5
Dinv39604 Davidia involucrata HOM05D005933 ORTHO05D007366 1.5e-142 510.4 388 65.2
AUR62026040 Chenopodium quinoa HOM05D005933 ORTHO05D007366 2.6e-139 499.6 459 55.6
EL10Ac3g07091 Beta vulgaris HOM05D005933 ORTHO05D007366 7.5e-139 498.0 467 56.1
ClCG10G016640 Citrullus lanatus HOM05D005933 ORTHO05D007366 2.9e-138 496.1 520 51.9
Cfa008569 Carpinus fangiana HOM05D005933 ORTHO05D007366 2.4e-137 493.0 337 71.8
Atru.chr1.1098 Acer truncatum HOM05D005933 ORTHO05D007366 7.0e-137 491.5 372 66.4
Hund05286 Selenicereus undatus HOM05D005933 ORTHO05D007366 9.2e-137 491.1 398 60.8
SalBow6G0452 Salvia bowleyana HOM05D005933 ORTHO05D007366 2.7e-136 489.6 451 55.9
SGA_v2.0_scaffold69G23116 Striga asiatica HOM05D005933 ORTHO05D007366 3.5e-136 489.2 467 55.7
Aqoxy5G03564 Aquilegia oxysepala HOM05D005933 ORTHO05D007366 1.5e-134 483.8 468 54.5
Peaxi162Scf00354g00225 Petunia axillaris HOM05D005933 ORTHO05D007366 2.8e-133 479.6 434 57.1
CAN.G128.8 Capsicum annuum HOM05D005933 ORTHO05D007366 1.8e-132 476.9 380 63.7
Ah.13g075070 Amaranthus hybridus HOM05D005933 ORTHO05D007366 1.2e-128 464.2 443 53.0
PSO782G3339 Papaver somniferum HOM05D005933 ORTHO05D007366 3.5e-128 462.6 474 54.2
Hma1.2p1_2002F.1_g310770 Hydrangea macrophylla HOM05D005933 ORTHO05D007366 1.5e-126 457.2 362 63.3
AUR62024451 Chenopodium quinoa HOM05D005933 ORTHO05D007366 5.6e-126 455.3 487 50.9
Prupe.7G060900 Prunus persica HOM05D005933 ORTHO05D007366 2.1e-117 426.8 320 68.1
ATR0686G233 Amborella trichopoda HOM05D005933 ORTHO05D007366 4.7e-117 425.6 424 52.6
MBI16_g31719_MAGBIO Magnolia biondii HOM05D005933 ORTHO05D007366 6.2e-117 425.2 476 50.4
unitig_749.g14146 Utricularia gibba HOM05D003650 ORTHO05D004213 1.4e-113 414.1 467 51.2
Oeu008914.1 Olea europaea HOM05D005933 ORTHO05D007366 2.0e-107 393.7 352 58.0
Oeu008916.1 Olea europaea HOM05D005933 ORTHO05D007366 2.0e-107 393.7 352 58.0
Os12g0588900 Oryza sativa ssp. japonica HOM05D005933 ORTHO05D007366 4.9e-106 389.0 399 49.9
SHI32975 Sapria himalayana HOM05D005933 ORTHO05D000023 1.7e-103 380.6 348 57.5
SEGI_18184 Sequoiadendron giganteum HOM05D005933 ORTHO05D007366 5.3e-100 369.0 447 44.5
Zm00001eb135000 Zea mays HOM05D005933 ORTHO05D007366 4.2e-97 359.4 400 47.5
Sc13g0001740 Simmondsia chinensis HOM05D005933 ORTHO05D007366 2.7e-96 356.7 289 63.3
CDE09G0169 Ceratophyllum demersum HOM05D005933 ORTHO05D007366 4.5e-91 339.3 258 64.7
HPP92_017763 Vanilla planifolia HOM05D005933 ORTHO05D007366 9.0e-84 315.1 350 46.0
TAR633G2718 Trochodendron aralioides HOM05D005933 ORTHO05D007366 6.5e-82 308.9 229 67.2
Glyma.19G139200 Glycine max HOM05D005933 ORTHO05D007366 4.6e-80 302.8 234 65.4
BcaNung04276 Brassica carinata HOM05D005933 ORTHO05D007366 6.9e-76 288.9 436 42.7
Mapoly0165s0023 Marchantia polymorpha HOM05D005933 ORTHO05D007366 5.0e-74 282.7 500 36.0
AagrBONN_evm.TU.Sc2ySwM_117.299 Anthoceros agrestis HOM05D005933 ORTHO05D007366 3.7e-69 266.5 454 38.5
SMO145G0218 Selaginella moellendorffii HOM05D005933 ORTHO05D007366 3.4e-67 260.0 351 42.5
Cfa017604 Carpinus fangiana HOM05D005933 ORTHO05D007366 2.2e-61 240.7 377 39.3
Rhsim03G0020400 Rhododendron simsii HOM05D005933 ORTHO05D007366 6.5e-58 229.2 233 52.4
Pp3c14_19420 Physcomitrium patens HOM05D005933 ORTHO05D007366 1.7e-53 214.5 296 39.9
CDE02G1215 Ceratophyllum demersum HOM05D002948 ORTHO05D003577 2.8e-53 213.8 181 61.3
Cfa017749 Carpinus fangiana HOM05D005933 ORTHO05D007366 1.1e-52 211.8 223 51.6
C07p62070 Brassica napus HOM05D005933 ORTHO05D007366 8.5e-50 202.2 160 63.8
BolC7t46624H Brassica oleracea HOM05D005933 ORTHO05D007366 8.5e-50 202.2 160 63.8
Atru.chr1.1100 Acer truncatum HOM05D005933 ORTHO05D007366 9.7e-46 188.7 174 58.6
Cc06_g12380 Coffea canephora HOM05D005933 ORTHO05D007366 1.4e-39 168.3 170 54.1
MD12G1074100 Malus domestica HOM05D005933 ORTHO05D007366 1.4e-39 168.3 162 54.3
CBR_g982 Chara braunii HOM05D005933 ORTHO05D007366 8.8e-39 165.6 423 28.6
Sc13g0001730 Simmondsia chinensis HOM05D005933 ORTHO05D007366 2.8e-37 160.6 151 55.0
TAR633G2604 Trochodendron aralioides HOM05D005933 ORTHO05D007366 8.6e-34 149.1 104 69.2
BcaNung03522 Brassica carinata HOM05D005933 ORTHO05D007366 5.5e-33 146.4 145 51.7
TAR636G2120 Trochodendron aralioides HOM05D005933 ORTHO05D007366 2.2e-29 134.4 114 58.8
Cre01.g043500 Chlamydomonas reinhardtii HOM05D005933 ORTHO05D007366 1.7e-21 108.2 430 24.9
SHI32976 Sapria himalayana HOM05D000105 ORTHO05D000023 6.6e-18 96.3 105 47.6
Nn8g40508 Nelumbo nucifera HOM05D005933 ORTHO05D007366 6.2e-16 89.7 67 61.2
Dinv12483 Davidia involucrata HOM05D005933 ORTHO05D007366 3.1e-15 87.4 105 44.8
Rhsim03G0024000 Rhododendron simsii HOM05D005933 ORTHO05D007366 8.3e-13 79.3 52 67.3
Rhsim03G0022600 Rhododendron simsii HOM05D005933 ORTHO05D007366 1.1e-12 79.0 52 67.3
Nn8g40507 Nelumbo nucifera HOM05D005933 ORTHO05D007366 1.2e-11 75.5 90 46.7


User provided reference genes

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