Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G226300 Populus trichocarpa HOM05D005783 ORTHO05D007042 4.8e-31 137.1 65 100.0
Potri.002G036500 Populus trichocarpa HOM05D005783 ORTHO05D007042 6.9e-30 133.3 65 96.9
FvH4_2g21220 Fragaria vesca HOM05D005783 ORTHO05D007042 5.8e-29 130.2 65 93.8
FAN20G2131 Fragaria x ananassa HOM05D005783 ORTHO05D007042 5.8e-29 130.2 65 93.8
RcHm_v2.0_Chr6g0287721 Rosa chinensis HOM05D005783 ORTHO05D007042 5.8e-29 130.2 65 93.8
COL.COLO4_31022 Corchorus olitorius HOM05D005783 ORTHO05D007042 9.9e-29 129.4 65 92.3
Duzib160G0066 Durio zibethinus HOM05D005783 ORTHO05D007042 1.3e-28 129.0 65 92.3
Duzib235G0343 Durio zibethinus HOM05D005783 ORTHO05D007042 1.3e-28 129.0 65 92.3
Gohir.A10G043300 Gossypium hirsutum HOM05D005783 ORTHO05D007042 1.3e-28 129.0 65 93.8
Gohir.D10G044500 Gossypium hirsutum HOM05D005783 ORTHO05D007042 1.3e-28 129.0 65 93.8
Gorai.011G047500 Gossypium raimondii HOM05D005783 ORTHO05D007042 1.3e-28 129.0 65 93.8
Prupe.8G221500 Prunus persica HOM05D005783 ORTHO05D007042 1.7e-28 128.6 65 92.3
Gohir.D06G144100 Gossypium hirsutum HOM05D005783 ORTHO05D007042 2.2e-28 128.3 65 92.3
Phvul.007G033301 Phaseolus vulgaris HOM05D005783 ORTHO05D007042 2.9e-28 127.9 65 92.3
Phvul.008G022975 Phaseolus vulgaris HOM05D005783 ORTHO05D007042 2.9e-28 127.9 65 92.3
Glyma.03G164500 Glycine max HOM05D005783 ORTHO05D007042 3.8e-28 127.5 65 92.3
Glyma.19G165900 Glycine max HOM05D005783 ORTHO05D007042 3.8e-28 127.5 65 92.3
Gorai.010G167900 Gossypium raimondii HOM05D005783 ORTHO05D007042 4.9e-28 127.1 65 90.8
Phvul.001G162100 Phaseolus vulgaris HOM05D005783 ORTHO05D007042 4.9e-28 127.1 65 92.3
TWI75G0260 Tripterygium wilfordii HOM05D005783 ORTHO05D007042 4.9e-28 127.1 65 92.3
EL10As5g23481 Beta vulgaris HOM05D005783 ORTHO05D007042 8.4e-28 126.3 65 92.3
CANSAT01G1988 Cannabis sativa HOM05D005783 ORTHO05D007042 1.1e-27 125.9 65 90.8
Eucgr.A00909 Eucalyptus grandis HOM05D005783 ORTHO05D007042 1.1e-27 125.9 65 92.3
Lalb_Chr13g0299521 Lupinus albus HOM05D005783 ORTHO05D007042 1.1e-27 125.9 65 92.3
PGR031G0633 Punica granatum HOM05D005783 ORTHO05D007042 1.1e-27 125.9 65 92.3
MELO3C012871.2 Cucumis melo HOM05D005783 ORTHO05D007042 1.4e-27 125.6 65 92.3
Lalb_Chr07g0181091 Lupinus albus HOM05D005783 ORTHO05D007042 1.4e-27 125.6 65 92.3
CiPaw.04G187800 Carya illinoinensis HOM05D005783 ORTHO05D007042 1.9e-27 125.2 65 90.8
Nn3g19695 Nelumbo nucifera HOM05D005783 ORTHO05D007042 1.9e-27 125.2 65 90.8
Thecc.06G145600 Theobroma cacao HOM05D005783 ORTHO05D007042 1.9e-27 125.2 65 89.2
TWI18G0071 Tripterygium wilfordii HOM05D005783 ORTHO05D007042 1.9e-27 125.2 65 92.3
Hund09610 Selenicereus undatus HOM05D005783 ORTHO05D007042 2.4e-27 124.8 65 90.8
arahy.Tifrunner.gnm1.ann1.3WZ992 Arachis hypogaea HOM05D005783 ORTHO05D007042 3.2e-27 124.4 65 90.8
arahy.Tifrunner.gnm1.ann1.EB1FDX Arachis hypogaea HOM05D005783 ORTHO05D007042 3.2e-27 124.4 65 90.8
arahy.Tifrunner.gnm1.ann1.P2X2DJ Arachis hypogaea HOM05D005783 ORTHO05D007042 3.2e-27 124.4 65 90.8
arahy.Tifrunner.gnm1.ann1.R5MBR2 Arachis hypogaea HOM05D005783 ORTHO05D007042 3.2e-27 124.4 65 90.8
Lalb_Chr12g0200071 Lupinus albus HOM05D005783 ORTHO05D007042 3.2e-27 124.4 65 90.8
Manes.13G035600 Manihot esculenta HOM05D005783 ORTHO05D007042 3.2e-27 124.4 65 90.8
Hund02922 Selenicereus undatus HOM05D005783 ORTHO05D007042 3.2e-27 124.4 65 90.8
CsaV3_3G022140 Cucumis sativus L. HOM05D005783 ORTHO05D007042 4.2e-27 124.0 65 90.8
Nitab4.5_0007062g0060 Nicotiana tabacum HOM05D005783 ORTHO05D007042 4.2e-27 124.0 65 90.8
TWI12G1387 Tripterygium wilfordii HOM05D005783 ORTHO05D007042 4.2e-27 124.0 65 90.8
CDE03G0454 Ceratophyllum demersum HOM05D005783 ORTHO05D007042 5.5e-27 123.6 65 89.2
CSS0031432 Camellia sinensis var. sinensis HOM05D005783 ORTHO05D007042 7.1e-27 123.2 65 90.8
Migut.N02211 Erythranthe guttata HOM05D005783 ORTHO05D007042 7.1e-27 123.2 65 89.2
MD10G1181400 Malus domestica HOM05D005783 ORTHO05D007042 7.1e-27 123.2 65 87.7
CAN.G1366.15 Capsicum annuum HOM05D005783 ORTHO05D007042 9.3e-27 122.9 65 89.2
CAN.G812.22 Capsicum annuum HOM05D005783 ORTHO05D007042 9.3e-27 122.9 65 89.2
Lj1g0019785 Lotus japonicus HOM05D005783 ORTHO05D007042 9.3e-27 122.9 65 89.2
Lj4g0020381 Lotus japonicus HOM05D005783 ORTHO05D007042 9.3e-27 122.9 65 90.8
Manes.13G035400 Manihot esculenta HOM05D005783 ORTHO05D007042 9.3e-27 122.9 65 89.2
Nitab4.5_0000326g0120 Nicotiana tabacum HOM05D005783 ORTHO05D007042 9.3e-27 122.9 65 89.2
Nitab4.5_0005593g0040 Nicotiana tabacum HOM05D005783 ORTHO05D007042 9.3e-27 122.9 65 89.2
Actinidia09533 Actinidia chinensis HOM05D000063 ORTHO05D002147 1.2e-26 122.5 65 87.7
Ciclev10023246m.g Citrus clementina HOM05D005783 ORTHO05D007042 1.2e-26 122.5 65 87.7
TAR633G0770 Trochodendron aralioides HOM05D005783 ORTHO05D007042 1.6e-26 122.1 65 89.2
PGSC0003DMG400025503 Solanum tuberosum HOM05D005783 ORTHO05D007042 2.1e-26 121.7 65 89.2
HPP92_023430 Vanilla planifolia HOM05D005783 ORTHO05D007042 2.1e-26 121.7 65 89.2
Lsat_1_v5_gn_9_10421 Lactuca sativa HOM05D005783 ORTHO05D007042 2.7e-26 121.3 65 87.7
MD05G1194800 Malus domestica HOM05D005783 ORTHO05D007042 3.5e-26 120.9 65 86.2
Nitab4.5_0006107g0020 Nicotiana tabacum HOM05D005783 ORTHO05D007042 3.5e-26 120.9 63 90.5
GSVIVG01033693001 Vitis vinifera HOM05D005783 ORTHO05D007042 4.6e-26 120.6 65 87.7
Atru.chr12.1356 Acer truncatum HOM05D005783 ORTHO05D007042 6.0e-26 120.2 59 93.2
Sed0004262 Sechium edule HOM05D005783 ORTHO05D007042 6.0e-26 120.2 65 89.2
Atru.chr5.1729 Acer truncatum HOM05D005783 ORTHO05D007042 7.9e-26 119.8 59 93.2
Aqoxy3G02728 Aquilegia oxysepala HOM05D005783 ORTHO05D007042 1.0e-25 119.4 65 87.7
Os02g0618250 Oryza sativa ssp. japonica HOM05D005783 ORTHO05D007042 1.0e-25 119.4 65 84.6
Peaxi162Scf00624g00036 Petunia axillaris HOM05D005783 ORTHO05D007042 1.0e-25 119.4 65 87.7
AL3G53490 Arabidopsis lyrata HOM05D005783 ORTHO05D007042 1.3e-25 119.0 65 86.2
Sed0003492 Sechium edule HOM05D005783 ORTHO05D007042 1.3e-25 119.0 65 87.7
HanXRQChr09g0254261 Helianthus annuus HOM05D005783 ORTHO05D007042 1.8e-25 118.6 65 86.2
Lsat_1_v5_gn_5_182900 Lactuca sativa HOM05D005783 ORTHO05D007042 1.8e-25 118.6 65 86.2
Rhsim01G0263700 Rhododendron simsii HOM05D005783 ORTHO05D007042 1.8e-25 118.6 65 86.2
ECA247G3893 Erigeron canadensis HOM05D005783 ORTHO05D007042 2.3e-25 118.2 62 88.7
Solyc09g066500.4 Solanum lycopersicum HOM05D005783 ORTHO05D007042 2.3e-25 118.2 65 86.2
PGSC0003DMG400010293 Solanum tuberosum HOM05D005783 ORTHO05D007042 2.3e-25 118.2 65 86.2
CSS0015227 Camellia sinensis var. sinensis HOM05D005783 ORTHO05D007042 3.0e-25 117.9 65 86.2
Carub.0003s3493 Capsella rubella HOM05D005783 ORTHO05D007042 3.9e-25 117.5 65 84.6
CARHR111040 Cardamine hirsuta HOM05D005783 ORTHO05D007042 3.9e-25 117.5 65 84.6
ClCG07G001140 Citrullus lanatus HOM05D005783 ORTHO05D007042 3.9e-25 117.5 62 90.3
FAN15G2862 Fragaria x ananassa HOM05D005783 ORTHO05D007042 3.9e-25 117.5 87 70.1
AT2G20490 Arabidopsis thaliana HOM05D005783 ORTHO05D007042 5.1e-25 117.1 65 84.6
Gohir.A06G139500 Gossypium hirsutum HOM05D005783 ORTHO05D007042 6.7e-25 116.7 65 84.6
PSO210G0272 Papaver somniferum HOM05D005783 ORTHO05D007042 6.7e-25 116.7 65 86.2
PSO210G6011 Papaver somniferum HOM05D005783 ORTHO05D007042 6.7e-25 116.7 65 86.2
PSO386G0180 Papaver somniferum HOM05D005783 ORTHO05D007042 6.7e-25 116.7 65 86.2
PSO386G0258 Papaver somniferum HOM05D005783 ORTHO05D007042 6.7e-25 116.7 65 86.2
Sp3g33690 Schrenkiella parvula HOM05D005783 ORTHO05D007042 6.7e-25 116.7 65 84.6
THA.LOC104814520 Tarenaya hassleriana HOM05D005783 ORTHO05D007042 1.5e-24 115.5 65 84.6
Aa31LG8G17440 Aethionema arabicum HOM05D006747 ORTHO05D008384 1.9e-24 115.2 63 85.7
A07p00260 Brassica napus HOM05D005783 ORTHO05D007042 1.9e-24 115.2 65 83.1
BraA07t27818Z Brassica rapa HOM05D005783 ORTHO05D007042 1.9e-24 115.2 65 83.1
Cc08_g00200 Coffea canephora HOM05D005783 ORTHO05D007042 1.9e-24 115.2 65 84.6
Medtr7g097110 Medicago truncatula HOM05D005783 ORTHO05D007042 2.5e-24 114.8 65 84.6
THA.LOC104804047 Tarenaya hassleriana HOM05D005783 ORTHO05D007042 2.5e-24 114.8 65 84.6
Cfa013045 Carpinus fangiana HOM05D005783 ORTHO05D007042 3.3e-24 114.4 65 84.6
Thhalv10002146m.g Eutrema salsugineum HOM05D005783 ORTHO05D007042 3.3e-24 114.4 65 81.5
BcaC07g41214 Brassica carinata HOM05D005783 ORTHO05D007042 5.6e-24 113.6 65 81.5
A09p58870 Brassica napus HOM05D005783 ORTHO05D007042 5.6e-24 113.6 65 81.5
C08p42200 Brassica napus HOM05D005783 ORTHO05D007042 5.6e-24 113.6 65 81.5
BolC8t51779H Brassica oleracea HOM05D005783 ORTHO05D007042 5.6e-24 113.6 65 81.5
BraA09t41273Z Brassica rapa HOM05D005783 ORTHO05D007042 5.6e-24 113.6 65 81.5
Medtr8g069770 Medicago truncatula HOM05D005783 ORTHO05D007042 7.4e-24 113.2 65 84.6
BcaC06g36737 Brassica carinata HOM05D005783 ORTHO05D007042 9.6e-24 112.8 65 81.5
C07p00540 Brassica napus HOM05D005783 ORTHO05D007042 9.6e-24 112.8 65 81.5
FAN27G1156 Fragaria x ananassa HOM05D005783 ORTHO05D007042 9.6e-24 112.8 99 61.6
BcaB03g16843 Brassica carinata HOM05D005783 ORTHO05D007042 2.8e-23 111.3 65 80.0
MBI07_g16905_MAGBIO Magnolia biondii HOM05D005783 ORTHO05D007042 2.8e-23 111.3 61 85.2
SalBow6G4406 Salvia bowleyana HOM05D005783 ORTHO05D007042 2.8e-23 111.3 87 67.8
BcaB08g34911 Brassica carinata HOM05D005783 ORTHO05D007042 3.7e-23 110.9 65 80.0
BcaC04g22786 Brassica carinata HOM05D005783 ORTHO05D007042 3.7e-23 110.9 65 80.0
A09p12910 Brassica napus HOM05D005783 ORTHO05D007042 3.7e-23 110.9 65 80.0
C09p15300 Brassica napus HOM05D005783 ORTHO05D007042 3.7e-23 110.9 65 80.0
BraA09t36936Z Brassica rapa HOM05D005783 ORTHO05D007042 3.7e-23 110.9 65 80.0
unitig_60.g25746 Utricularia gibba HOM05D005783 ORTHO05D007042 1.2e-21 105.9 83 67.5
SEGI_26494 Sequoiadendron giganteum HOM05D005783 ORTHO05D007042 2.6e-21 104.8 65 75.4
BolC7t40500H Brassica oleracea HOM05D005783 ORTHO05D007042 1.3e-20 102.4 78 66.7
Haze_21406 Corylus avellana HOM05D005783 ORTHO05D007042 1.7e-20 102.1 76 69.7
SMO133G0019 Selaginella moellendorffii HOM05D005783 ORTHO05D007042 3.8e-20 100.9 65 69.2
Sabra05G0174700 Salix brachista HOM05D005783 ORTHO05D007042 1.4e-19 99.0 48 97.9
Pp3c19_4700 Physcomitrium patens HOM05D005783 ORTHO05D007042 3.2e-19 97.8 65 69.2
Mapoly0081s0079 Marchantia polymorpha HOM05D005783 ORTHO05D007042 4.2e-19 97.4 65 69.2
BolC9t54438H Brassica oleracea HOM05D005783 ORTHO05D007042 1.2e-18 95.9 93 55.9
SalBow6G1359 Salvia bowleyana HOM05D005783 ORTHO05D007042 1.2e-18 95.9 116 50.9
MCO03G241 Micromonas commoda HOM05D005783 ORTHO05D007042 5.1e-17 90.5 59 66.1
Cre05.g237700 Chlamydomonas reinhardtii HOM05D005783 ORTHO05D007042 1.1e-16 89.4 61 65.6
Phvul.011G076600 Phaseolus vulgaris HOM05D005783 ORTHO05D007042 1.1e-16 89.4 47 89.4
PRCOL_00002782 Prasinoderma coloniale HOM05D005783 ORTHO05D007042 1.3e-15 85.9 59 66.1
MELO3C033129.2 Cucumis melo HOM05D005783 ORTHO05D007042 3.7e-15 84.3 59 74.6
HanXRQChr10g0280801 Helianthus annuus HOM05D005783 ORTHO05D007042 5.3e-14 80.5 47 83.0
Duzib192G0414 Durio zibethinus HOM05D005783 ORTHO05D007042 2.9e-12 74.7 89 51.7
BcaC03g16291 Brassica carinata HOM05D005783 ORTHO05D007042 3.8e-12 74.3 47 76.6
CAN.G304.1 Capsicum annuum HOM05D005783 ORTHO05D007042 7.2e-11 70.1 64 53.1
FAN24G2571 Fragaria x ananassa HOM05D005783 ORTHO05D007042 1.2e-10 69.3 43 83.7
unitig_0.g159 Utricularia gibba HOM05D005783 ORTHO05D007042 2.1e-10 68.6 44 70.5
CSS0014186 Camellia sinensis var. sinensis HOM05D005783 ORTHO05D007042 3.3e-08 61.2 63 55.6
CSS0019928 Camellia sinensis var. sinensis HOM05D005783 ORTHO05D007042 2.2e-07 58.5 68 47.1
SGA_v2.0_scaffold1G00624 Striga asiatica HOM05D003718 ORTHO05D004402 2.2e-07 58.5 29 93.1


User provided reference genes

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