Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G061432 Populus trichocarpa HOM05D003810 ORTHO05D004416 3.8e-202 708.0 369 100.0
Potri.007G107400 Populus trichocarpa HOM05D003810 ORTHO05D004416 2.3e-183 645.6 364 92.3
Sabra07G0088100 Salix brachista HOM05D003810 ORTHO05D004416 2.0e-174 615.9 421 78.6
Manes.02G224100 Manihot esculenta HOM05D003810 ORTHO05D004416 3.5e-131 472.2 311 77.8
Thecc.09G267400 Theobroma cacao HOM05D003810 ORTHO05D004416 2.4e-127 459.5 366 66.1
Duzib150G1314 Durio zibethinus HOM05D003810 ORTHO05D004416 9.4e-124 447.6 366 64.8
Atru.chr2.3847 Acer truncatum HOM05D003810 ORTHO05D004416 2.3e-122 443.0 367 61.9
Eucgr.J01409 Eucalyptus grandis HOM05D003810 ORTHO05D004416 1.1e-121 440.7 367 62.1
Gorai.001G127200 Gossypium raimondii HOM05D003810 ORTHO05D004416 2.5e-121 439.5 366 63.1
Gohir.D07G118250 Gossypium hirsutum HOM05D003810 ORTHO05D004416 3.3e-121 439.1 366 63.1
Gohir.A07G114448 Gossypium hirsutum HOM05D003810 ORTHO05D004416 7.4e-121 438.0 360 63.9
Ciclev10007802m.g Citrus clementina HOM05D003810 ORTHO05D004416 2.8e-120 436.0 365 61.9
Atru.chr12.1053 Acer truncatum HOM05D003810 ORTHO05D004416 6.3e-120 434.9 366 60.9
GSVIVG01014785001 Vitis vinifera HOM05D003810 ORTHO05D004416 1.4e-119 433.7 367 62.9
COL.COLO4_25217 Corchorus olitorius HOM05D003810 ORTHO05D004416 3.2e-116 422.5 366 61.5
MELO3C020474.2 Cucumis melo HOM05D003810 ORTHO05D004416 4.2e-116 422.2 366 63.1
PGR042G2745 Punica granatum HOM05D003810 ORTHO05D004416 7.2e-116 421.4 367 60.8
CsaV3_4G027560 Cucumis sativus L. HOM05D003810 ORTHO05D004416 1.2e-115 420.6 366 63.1
Sed0019869 Sechium edule HOM05D003810 ORTHO05D004416 2.1e-115 419.9 368 62.5
Prupe.1G583500 Prunus persica HOM05D003810 ORTHO05D004416 1.8e-114 416.8 380 59.7
Rhsim04G0009500 Rhododendron simsii HOM05D003810 ORTHO05D004416 2.3e-114 416.4 369 60.2
CANSAT11G0157 Cannabis sativa HOM05D003810 ORTHO05D004416 3.9e-114 415.6 374 60.4
Cfa016940 Carpinus fangiana HOM05D003810 ORTHO05D004416 5.1e-114 415.2 376 60.1
Aa31LG10G490 Aethionema arabicum HOM05D003810 ORTHO05D004416 2.0e-113 413.3 364 61.0
MD15G1441400 Malus domestica HOM05D003810 ORTHO05D004416 3.3e-113 412.5 366 61.7
Thhalv10011333m.g Eutrema salsugineum HOM05D003810 ORTHO05D004416 4.4e-113 412.1 361 61.5
QL08p001596 Quercus lobata HOM05D003810 ORTHO05D004416 4.4e-113 412.1 385 59.0
Sc14g0003560 Simmondsia chinensis HOM05D003810 ORTHO05D004416 9.7e-113 411.0 369 60.2
CSS0024914 Camellia sinensis var. sinensis HOM05D003810 ORTHO05D004416 6.3e-112 408.3 371 59.0
RcHm_v2.0_Chr7g0221221 Rosa chinensis HOM05D003810 ORTHO05D004416 1.8e-111 406.8 370 59.2
AL1G63840 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 3.1e-111 406.0 364 61.0
THA.LOC104815683 Tarenaya hassleriana HOM05D003810 ORTHO05D004416 4.1e-111 405.6 366 60.1
Lj3C711T10 Lonicera japonica HOM05D003810 ORTHO05D004416 7.0e-111 404.8 367 58.9
AT1G55750 Arabidopsis thaliana HOM05D003810 ORTHO05D004416 1.2e-110 404.1 364 60.2
Carub.0001s4426 Capsella rubella HOM05D003810 ORTHO05D004416 3.5e-110 402.5 365 60.0
TPR.G13386 Trifolium pratense HOM05D003810 ORTHO05D004416 7.7e-110 401.4 364 59.3
TAR627G1185 Trochodendron aralioides HOM05D003810 ORTHO05D004416 1.3e-109 400.6 371 60.1
FvH4_5g28910 Fragaria vesca HOM05D003810 ORTHO05D004416 2.9e-109 399.4 368 57.3
VMungo0720G2836 Vigna mungo HOM05D003810 ORTHO05D004416 2.9e-109 399.4 367 59.7
Lj5g0018758 Lotus japonicus HOM05D003810 ORTHO05D004416 5.0e-109 398.7 365 60.5
Nn2g14662 Nelumbo nucifera HOM05D003810 ORTHO05D004416 5.0e-109 398.7 376 59.3
Dinv40895 Davidia involucrata HOM05D003810 ORTHO05D004416 1.1e-108 397.5 367 57.5
Phvul.007G134900 Phaseolus vulgaris HOM05D003810 ORTHO05D004416 1.1e-108 397.5 367 59.1
CiPaw.11G208700 Carya illinoinensis HOM05D003810 ORTHO05D004416 1.4e-108 397.1 370 58.4
AT3G61420 Arabidopsis thaliana HOM05D003810 ORTHO05D004416 2.5e-108 396.4 359 59.9
CARHR045410 Cardamine hirsuta HOM05D003810 ORTHO05D004416 5.5e-108 395.2 366 59.8
TWI23G0485 Tripterygium wilfordii HOM05D003810 ORTHO05D004416 5.5e-108 395.2 375 58.1
PSO063G0853 Papaver somniferum HOM05D003810 ORTHO05D004416 7.2e-108 394.8 374 57.2
PSO782G5597 Papaver somniferum HOM05D003810 ORTHO05D004416 1.2e-107 394.0 374 57.2
BcaB05g24435 Brassica carinata HOM05D003810 ORTHO05D004416 1.6e-107 393.7 356 60.4
Cpa.g.sc181.12 Carica papaya HOM05D003810 ORTHO05D004416 2.1e-107 393.3 333 64.0
Psat6g170400 Pisum sativum HOM05D003810 ORTHO05D004416 2.7e-107 392.9 362 58.3
AL5G43720 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 3.6e-107 392.5 359 59.3
HanXRQChr05g0160211 Helianthus annuus HOM05D003810 ORTHO05D004416 8.0e-107 391.3 366 57.4
Lj1A897G41 Lonicera japonica HOM05D003810 ORTHO05D004416 1.4e-106 390.6 364 59.1
ATR0751G036 Amborella trichopoda HOM05D003810 ORTHO05D004416 6.7e-106 388.3 368 57.6
BcaC03g15064 Brassica carinata HOM05D003810 ORTHO05D004416 8.8e-106 387.9 356 59.3
Sp5g24310 Schrenkiella parvula HOM05D003810 ORTHO05D004416 1.1e-105 387.5 356 59.3
Glyma.10G193000 Glycine max HOM05D003810 ORTHO05D004416 1.5e-105 387.1 367 57.8
C02p26210 Brassica napus HOM05D003810 ORTHO05D004416 3.3e-105 386.0 356 59.0
BolC2t08687H Brassica oleracea HOM05D003810 ORTHO05D004416 3.3e-105 386.0 356 59.0
DCAR_017597 Daucus carota HOM05D003810 ORTHO05D004416 9.7e-105 384.4 384 56.0
FAN04G0096 Fragaria x ananassa HOM05D003810 ORTHO05D004416 9.7e-105 384.4 368 56.5
Glyma.20G197500 Glycine max HOM05D003810 ORTHO05D004416 9.7e-105 384.4 365 57.3
Aqoxy3G00950 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 1.7e-104 383.6 372 56.5
Hma1.2p1_0193F.1_g084130 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 3.7e-104 382.5 379 55.1
MSTRG.13036 Avicennia marina HOM05D003810 ORTHO05D004416 6.3e-104 381.7 367 57.2
arahy.Tifrunner.gnm1.ann1.KKS8QY Arachis hypogaea HOM05D003810 ORTHO05D004416 1.8e-103 380.2 365 56.4
Migut.H01729 Erythranthe guttata HOM05D003810 ORTHO05D004416 2.4e-103 379.8 366 56.0
Nitab4.5_0000611g0250 Nicotiana tabacum HOM05D003810 ORTHO05D004416 3.1e-103 379.4 368 58.4
Nitab4.5_0001622g0070 Nicotiana tabacum HOM05D003810 ORTHO05D004416 4.1e-103 379.0 368 57.9
Ca_10408_v3 Cicer arietinum L. HOM05D003810 ORTHO05D004416 7.0e-103 378.3 393 54.2
Cc00_g20590 Coffea canephora HOM05D003810 ORTHO05D004416 7.0e-103 378.3 361 57.1
Medtr1g090110 Medicago truncatula HOM05D003810 ORTHO05D004416 7.0e-103 378.3 361 57.1
FvH4_6g25000 Fragaria vesca HOM05D003810 ORTHO05D004416 9.1e-103 377.9 368 55.2
CDE04G2581 Ceratophyllum demersum HOM05D003810 ORTHO05D004416 4.5e-102 375.6 375 57.1
CAN.G492.44 Capsicum annuum HOM05D003810 ORTHO05D004416 1.7e-101 373.6 365 57.3
Haze_09895 Corylus avellana HOM05D003810 ORTHO05D004416 1.7e-101 373.6 401 53.6
A02p15760 Brassica napus HOM05D003810 ORTHO05D004416 3.8e-101 372.5 357 57.7
BraA02t06637Z Brassica rapa HOM05D003810 ORTHO05D004416 6.5e-101 371.7 358 57.8
Solyc10g005900.3 Solanum lycopersicum HOM05D003810 ORTHO05D004416 1.9e-100 370.2 368 56.5
Sopen10g001850 Solanum pennellii HOM05D003810 ORTHO05D004416 1.9e-100 370.2 368 56.5
Peaxi162Scf00212g00616 Petunia axillaris HOM05D003810 ORTHO05D004416 1.6e-99 367.1 361 56.2
Os08g0338200 Oryza sativa ssp. japonica HOM05D003810 ORTHO05D004416 3.6e-99 365.9 373 55.5
ClCG04G003010 Citrullus lanatus HOM05D003810 ORTHO05D004416 1.8e-98 363.6 367 56.7
vmacro09609 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 1.8e-98 363.6 430 49.3
vmacro22299 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 1.8e-98 363.6 430 49.3
FAN14G4445 Fragaria x ananassa HOM05D003810 ORTHO05D004416 3.0e-98 362.8 400 50.8
Actinidia00838 Actinidia chinensis HOM05D003810 ORTHO05D004416 5.2e-98 362.1 319 61.8
ECA246G2898 Erigeron canadensis HOM05D003810 ORTHO05D004416 1.2e-97 360.9 363 52.6
FAN08G2973 Fragaria x ananassa HOM05D003810 ORTHO05D004416 2.6e-97 359.8 374 53.5
Lj3A773G17 Lonicera japonica HOM05D003810 ORTHO05D004416 2.6e-97 359.8 364 55.2
TAR629G3163 Trochodendron aralioides HOM05D003810 ORTHO05D004416 2.6e-97 359.8 367 55.6
Zm00001eb172700 Zea mays HOM05D003810 ORTHO05D004416 4.4e-97 359.0 370 53.5
Medtr6g071555 Medicago truncatula HOM05D003810 ORTHO05D004416 5.7e-97 358.6 362 55.2
MBI15_g00877_MAGBIO Magnolia biondii HOM05D003810 ORTHO05D004416 4.1e-95 352.4 373 54.4
AUR62017624 Chenopodium quinoa HOM05D003810 ORTHO05D004416 1.2e-94 350.9 373 55.8
AUR62015172 Chenopodium quinoa HOM05D003810 ORTHO05D004416 2.9e-93 346.3 373 55.5
arahy.Tifrunner.gnm1.ann1.60T2A8 Arachis hypogaea HOM05D003810 ORTHO05D004416 3.2e-92 342.8 365 52.9
FAN18G3759 Fragaria x ananassa HOM05D003810 ORTHO05D004416 5.5e-92 342.0 491 42.8
HPP92_028601 Vanilla planifolia HOM05D003810 ORTHO05D004416 1.2e-91 340.9 362 52.5
Aqoxy2G00893 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 4.7e-91 339.0 369 52.8
Prupe.5G213500 Prunus persica HOM05D003810 ORTHO05D004416 8.0e-91 338.2 363 52.3
Oeu062684.4 Olea europaea HOM05D003810 ORTHO05D004416 2.6e-89 333.2 388 50.3
Ah.01g013210 Amaranthus hybridus HOM05D003810 ORTHO05D004416 3.7e-88 329.3 294 60.5
Lsat_1_v5_gn_1_66020 Lactuca sativa HOM05D003810 ORTHO05D004416 3.7e-88 329.3 369 50.9
EL10Ac9g22878 Beta vulgaris HOM05D003810 ORTHO05D004416 1.5e-84 317.4 373 51.2
Pp3c26_14480 Physcomitrium patens HOM05D003810 ORTHO05D004416 2.6e-81 306.6 372 45.4
Prupe.5G046900 Prunus persica HOM05D003810 ORTHO05D004416 7.5e-81 305.1 346 52.0
AagrBONN_evm.TU.Sc2ySwM_117.3105 Anthoceros agrestis HOM05D003810 ORTHO05D004416 2.4e-79 300.1 371 48.0
SGA_v2.0_scaffold146G36126 Striga asiatica HOM05D003810 ORTHO05D004416 1.2e-78 297.7 367 48.2
unitig_61.g26129 Utricularia gibba HOM05D003810 ORTHO05D004416 7.8e-78 295.0 363 47.9
MD08G1246300 Malus domestica HOM05D003810 ORTHO05D004416 4.3e-76 289.3 232 66.4
Aqoxy7G03331 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 2.8e-75 286.6 257 60.7
BcaB07g33855 Brassica carinata HOM05D003810 ORTHO05D004416 1.4e-74 284.3 336 47.6
Mapoly0009s0093 Marchantia polymorpha HOM05D003810 ORTHO05D004416 1.8e-74 283.9 384 44.3
SGA_v2.0_scaffold42G15939 Striga asiatica HOM05D003810 ORTHO05D004416 5.2e-74 282.3 424 43.2
Lsat_1_v5_gn_9_33460 Lactuca sativa HOM05D003810 ORTHO05D004416 3.2e-71 273.1 363 46.3
Dinv10375 Davidia involucrata HOM05D003810 ORTHO05D004416 2.2e-64 250.4 364 44.5
SHI21694 Sapria himalayana HOM05D003810 ORTHO05D004416 2.2e-64 250.4 224 58.9
Duzib168G0397 Durio zibethinus HOM05D003810 ORTHO05D004416 6.4e-64 248.8 185 70.3
FAN02G2818 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.6e-62 244.2 334 46.1
FAN05G0299 Fragaria x ananassa HOM05D003810 ORTHO05D010162 1.5e-57 227.6 206 60.2
CBR_g28523 Chara braunii HOM05D000019 ORTHO05D000002 8.3e-56 221.9 249 47.0
SMO228G0023 Selaginella moellendorffii HOM05D003810 ORTHO05D004416 8.3e-56 221.9 379 38.8
Lalb_Chr06g0169761 Lupinus albus HOM05D003810 ORTHO05D004416 1.2e-54 218.0 204 56.9
BcaC08g42928 Brassica carinata HOM05D003810 ORTHO05D004416 1.9e-52 210.7 272 49.3
FAN02G0111 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.2e-51 208.0 249 49.0
Thhalv10011448m.g Eutrema salsugineum HOM05D003810 ORTHO05D004416 2.8e-51 206.8 333 39.9
CiPaw.14G066700 Carya illinoinensis HOM05D003810 ORTHO05D004416 3.1e-50 203.4 208 52.4
FAN02G0356 Fragaria x ananassa HOM05D003810 ORTHO05D004416 3.4e-49 199.9 230 50.0
QL04p000617 Quercus lobata HOM05D003810 ORTHO05D004416 2.1e-46 190.7 257 47.9
Lalb_Chr06g0169751 Lupinus albus HOM05D003810 ORTHO05D004416 1.5e-44 184.5 157 63.1
Rhsim05G0134800 Rhododendron simsii HOM05D003492 ORTHO05D005115 3.6e-43 179.9 282 42.6
Hma1.2p1_2995F.1_g331430 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 9.6e-36 155.2 197 45.7
BolC6t35297H Brassica oleracea HOM05D003810 ORTHO05D004416 1.6e-35 154.5 177 51.4
CAN.G306.2 Capsicum annuum HOM05D003810 ORTHO05D004416 2.1e-35 154.1 178 53.4
CAN.G306.3 Capsicum annuum HOM05D003810 ORTHO05D004416 2.8e-35 153.7 178 53.4
HPP92_016056 Vanilla planifolia HOM05D003810 ORTHO05D004416 3.1e-34 150.2 123 61.0
Hund17709 Selenicereus undatus HOM05D003810 ORTHO05D004416 4.0e-34 149.8 224 43.3
CARHR219980 Cardamine hirsuta HOM05D003810 ORTHO05D004416 5.8e-33 146.0 137 57.7
RcHm_v2.0_Chr2g0090241 Rosa chinensis HOM05D003810 ORTHO05D004416 3.8e-32 143.3 200 49.5
SHI21692 Sapria himalayana HOM05D003810 ORTHO05D004416 2.7e-30 137.1 104 64.4
CiPaw.14G066900 Carya illinoinensis HOM05D003810 ORTHO05D004416 3.5e-30 136.7 106 67.9
Actinidia03659 Actinidia chinensis HOM05D003810 ORTHO05D004416 3.9e-29 133.3 142 52.1
Lj3g0026478 Lotus japonicus HOM05D003810 ORTHO05D004416 1.4e-26 124.8 108 57.4
Oeu005536.2 Olea europaea HOM05D003810 ORTHO05D004416 2.2e-24 117.5 166 44.6
FAN09G2262 Fragaria x ananassa HOM05D003810 ORTHO05D004416 7.1e-23 112.5 172 41.9
Hma1.2p1_2995F.1_g331440 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 2.7e-22 110.5 108 56.5
ECA233G1945 Erigeron canadensis HOM05D000449 ORTHO05D003939 3.9e-21 106.7 100 56.0
SGA_v2.0_scaffold126G33829 Striga asiatica HOM05D003810 ORTHO05D004416 6.2e-19 99.4 181 43.1
CAN.G790.44 Capsicum annuum HOM05D000872 ORTHO05D000777 1.2e-14 85.1 83 53.0
MCO14G434 Micromonas commoda HOM05D003810 ORTHO05D004416 1.6e-14 84.7 298 27.9
CAN.G312.5 Capsicum annuum HOM05D003810 ORTHO05D000001 3.9e-13 80.1 75 56.0
Hund08475 Selenicereus undatus HOM05D000185 ORTHO05D000105 3.9e-13 80.1 58 69.0
PRCOL_00004489 Prasinoderma coloniale HOM05D003810 ORTHO05D004416 3.3e-12 77.0 343 25.9
CAN.G289.45 Capsicum annuum HOM05D002177 ORTHO05D004416 5.7e-12 76.3 83 49.4
CAN.G1057.19 Capsicum annuum HOM05D000222 ORTHO05D004416 3.7e-11 73.6 164 36.0
CAN.G1328.7 Capsicum annuum HOM05D003810 ORTHO05D004416 3.7e-11 73.6 177 36.2
Cre10.g466550 Chlamydomonas reinhardtii HOM05D003810 ORTHO05D004416 5.9e-09 66.2 257 25.7
Sabra05G0051600 Salix brachista HOM05D003810 ORTHO05D004416 1.3e-08 65.1 48 72.9
CDE07G1690 Ceratophyllum demersum HOM05D003810 ORTHO05D004416 1.7e-08 64.7 71 47.9


User provided reference genes

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