Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G061366 Populus trichocarpa HOM05D003810 ORTHO05D004416 4.3e-110 401.4 207 100.0
Sabra07G0088100 Salix brachista HOM05D003810 ORTHO05D004416 4.1e-92 341.7 212 82.1
Manes.02G224100 Manihot esculenta HOM05D003810 ORTHO05D004416 1.2e-80 303.5 204 75.5
Actinidia00838 Actinidia chinensis HOM05D003810 ORTHO05D004416 3.9e-71 271.9 206 68.0
GSVIVG01014785001 Vitis vinifera HOM05D003810 ORTHO05D004416 8.8e-71 270.8 206 67.5
Thecc.09G267400 Theobroma cacao HOM05D003810 ORTHO05D004416 1.5e-70 270.0 206 67.0
Haze_09895 Corylus avellana HOM05D003810 ORTHO05D004416 5.7e-70 268.1 206 67.5
Cfa016940 Carpinus fangiana HOM05D003810 ORTHO05D004416 7.4e-70 267.7 206 67.0
Ciclev10007802m.g Citrus clementina HOM05D003810 ORTHO05D004416 1.3e-69 266.9 204 66.2
CSS0024914 Camellia sinensis var. sinensis HOM05D003810 ORTHO05D004416 1.7e-69 266.5 206 66.5
QL08p001596 Quercus lobata HOM05D003810 ORTHO05D004416 6.3e-69 264.6 206 67.5
TWI23G0485 Tripterygium wilfordii HOM05D003810 ORTHO05D004416 8.2e-69 264.2 204 67.2
Rhsim04G0009500 Rhododendron simsii HOM05D003810 ORTHO05D004416 1.1e-68 263.8 206 65.5
Sed0019869 Sechium edule HOM05D003810 ORTHO05D004416 2.4e-68 262.7 206 64.1
ClCG04G003010 Citrullus lanatus HOM05D003810 ORTHO05D004416 7.0e-68 261.2 205 64.4
vmacro22299 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 7.0e-68 261.2 206 64.6
MELO3C020474.2 Cucumis melo HOM05D003810 ORTHO05D004416 9.1e-68 260.8 205 63.9
CsaV3_4G027560 Cucumis sativus L. HOM05D003810 ORTHO05D004416 9.1e-68 260.8 205 63.9
Gohir.D07G118250 Gossypium hirsutum HOM05D003810 ORTHO05D004416 5.9e-67 258.1 206 64.1
Duzib168G0397 Durio zibethinus HOM05D003810 ORTHO05D004416 1.3e-66 256.9 224 60.3
MBI15_g00877_MAGBIO Magnolia biondii HOM05D003810 ORTHO05D004416 1.3e-66 256.9 207 64.7
FAN18G3759 Fragaria x ananassa HOM05D003810 ORTHO05D004416 2.2e-66 256.1 206 63.1
Sopen10g001850 Solanum pennellii HOM05D003810 ORTHO05D004416 2.2e-66 256.1 204 63.2
RcHm_v2.0_Chr7g0221221 Rosa chinensis HOM05D003810 ORTHO05D004416 2.9e-66 255.8 206 63.1
CANSAT11G0157 Cannabis sativa HOM05D003810 ORTHO05D004416 3.8e-66 255.4 206 64.1
Potri.007G107400 Populus trichocarpa HOM05D003810 ORTHO05D004416 6.5e-66 254.6 151 84.8
CAN.G492.44 Capsicum annuum HOM05D003810 ORTHO05D004416 8.5e-66 254.2 204 62.7
Solyc10g005900.3 Solanum lycopersicum HOM05D003810 ORTHO05D004416 8.5e-66 254.2 204 62.7
CiPaw.11G208700 Carya illinoinensis HOM05D003810 ORTHO05D004416 1.5e-65 253.4 206 64.6
Duzib150G1314 Durio zibethinus HOM05D003810 ORTHO05D004416 1.5e-65 253.4 206 62.6
Gohir.A07G114432 Gossypium hirsutum HOM05D003810 ORTHO05D004416 1.9e-65 253.1 206 63.1
Gorai.001G127200 Gossypium raimondii HOM05D003810 ORTHO05D004416 1.9e-65 253.1 207 63.8
Atru.chr2.3847 Acer truncatum HOM05D003810 ORTHO05D004416 4.2e-65 251.9 203 64.0
COL.COLO4_25217 Corchorus olitorius HOM05D003810 ORTHO05D004416 4.2e-65 251.9 206 62.6
Oeu062684.4 Olea europaea HOM05D003810 ORTHO05D004416 4.2e-65 251.9 204 63.2
FAN04G0096 Fragaria x ananassa HOM05D003810 ORTHO05D004416 9.4e-65 250.8 206 63.1
PSO063G0853 Papaver somniferum HOM05D003810 ORTHO05D004416 1.6e-64 250.0 205 61.5
Nitab4.5_0000611g0250 Nicotiana tabacum HOM05D003810 ORTHO05D004416 2.7e-64 249.2 204 61.3
MSTRG.13036 Avicennia marina HOM05D003810 ORTHO05D004416 4.7e-64 248.4 204 62.3
MD15G1441400 Malus domestica HOM05D003810 ORTHO05D004416 4.7e-64 248.4 206 62.1
Nitab4.5_0001622g0070 Nicotiana tabacum HOM05D003810 ORTHO05D004416 6.1e-64 248.1 204 61.3
PSO782G5597 Papaver somniferum HOM05D003810 ORTHO05D004416 6.1e-64 248.1 205 60.5
Atru.chr12.1053 Acer truncatum HOM05D003810 ORTHO05D004416 8.0e-64 247.7 203 63.5
Dinv40895 Davidia involucrata HOM05D003810 ORTHO05D004416 1.4e-63 246.9 188 68.1
Peaxi162Scf00212g00616 Petunia axillaris HOM05D003810 ORTHO05D004416 1.4e-63 246.9 204 61.3
FAN08G2973 Fragaria x ananassa HOM05D003810 ORTHO05D004416 6.7e-63 244.6 206 62.6
Cc00_g20590 Coffea canephora HOM05D003810 ORTHO05D004416 8.8e-63 244.2 204 61.3
Hma1.2p1_0193F.1_g084130 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 1.2e-62 243.8 223 60.5
Sc14g0003560 Simmondsia chinensis HOM05D003810 ORTHO05D004416 1.2e-62 243.8 204 60.3
THA.LOC104815683 Tarenaya hassleriana HOM05D003810 ORTHO05D004416 2.0e-62 243.0 201 63.2
TPR.G13386 Trifolium pratense HOM05D003810 ORTHO05D004416 2.0e-62 243.0 206 61.7
Ca_10408_v3 Cicer arietinum L. HOM05D003810 ORTHO05D004416 2.6e-62 242.7 206 60.2
Lj5g0018758 Lotus japonicus HOM05D003810 ORTHO05D004416 3.3e-62 242.3 206 61.2
Migut.H01729 Erythranthe guttata HOM05D003810 ORTHO05D004416 4.4e-62 241.9 206 60.2
Dinv10375 Davidia involucrata HOM05D003810 ORTHO05D004416 5.7e-62 241.5 206 63.6
Prupe.1G583500 Prunus persica HOM05D003810 ORTHO05D004416 9.7e-62 240.7 195 63.1
Ah.01g013210 Amaranthus hybridus HOM05D003810 ORTHO05D004416 1.7e-61 240.0 204 60.8
Medtr1g090110 Medicago truncatula HOM05D003810 ORTHO05D004416 1.7e-61 240.0 206 59.7
Lalb_Chr06g0169751 Lupinus albus HOM05D003810 ORTHO05D004416 2.8e-61 239.2 206 59.7
arahy.Tifrunner.gnm1.ann1.60T2A8 Arachis hypogaea HOM05D003810 ORTHO05D004416 3.7e-61 238.8 206 59.7
HanXRQChr05g0160211 Helianthus annuus HOM05D003810 ORTHO05D004416 4.8e-61 238.4 206 61.2
Lj1A897G42 Lonicera japonica HOM05D003810 ORTHO05D004416 4.8e-61 238.4 186 64.5
CiPaw.14G066900 Carya illinoinensis HOM05D003810 ORTHO05D004416 6.3e-61 238.0 206 60.7
Phvul.007G134900 Phaseolus vulgaris HOM05D003810 ORTHO05D004416 6.3e-61 238.0 206 60.2
vmacro09609 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 6.3e-61 238.0 216 58.8
arahy.Tifrunner.gnm1.ann1.KKS8QY Arachis hypogaea HOM05D003810 ORTHO05D004416 1.1e-60 237.3 206 59.2
AUR62017624 Chenopodium quinoa HOM05D003810 ORTHO05D004416 1.8e-60 236.5 204 59.3
ECA246G2898 Erigeron canadensis HOM05D003810 ORTHO05D004416 1.8e-60 236.5 204 60.3
EL10Ac9g22878 Beta vulgaris HOM05D003810 ORTHO05D004416 2.4e-60 236.1 204 61.8
Lsat_1_v5_gn_1_66020 Lactuca sativa HOM05D003810 ORTHO05D004416 4.1e-60 235.3 212 61.3
Lsat_1_v5_gn_9_33460 Lactuca sativa HOM05D003810 ORTHO05D004416 9.1e-60 234.2 210 61.4
VMungo0720G2836 Vigna mungo HOM05D003810 ORTHO05D004416 2.7e-59 232.6 206 58.7
SGA_v2.0_scaffold42G15939 Striga asiatica HOM05D003810 ORTHO05D004416 3.5e-59 232.3 211 57.8
Cpa.g.sc181.12 Carica papaya HOM05D003810 ORTHO05D004416 4.5e-59 231.9 206 61.7
Glyma.20G197500 Glycine max HOM05D003810 ORTHO05D004416 4.5e-59 231.9 206 58.3
ATR0751G036 Amborella trichopoda HOM05D003810 ORTHO05D004416 5.9e-59 231.5 206 56.8
Aqoxy3G00950 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 7.7e-59 231.1 197 59.4
Aqoxy2G00893 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 1.0e-58 230.7 205 59.5
Eucgr.J01409 Eucalyptus grandis HOM05D003810 ORTHO05D004416 1.0e-58 230.7 204 58.8
Aa31LG10G490 Aethionema arabicum HOM05D003810 ORTHO05D004416 5.0e-58 228.4 203 57.6
unitig_61.g26129 Utricularia gibba HOM05D003810 ORTHO05D004416 6.5e-58 228.0 204 59.3
Sp5g24310 Schrenkiella parvula HOM05D003810 ORTHO05D004416 8.5e-58 227.6 204 57.4
A02p15760 Brassica napus HOM05D003810 ORTHO05D004416 3.2e-57 225.7 206 55.3
AL1G63840 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 4.2e-57 225.3 203 56.7
BraA02t06637Z Brassica rapa HOM05D003810 ORTHO05D004416 4.2e-57 225.3 206 55.3
BcaC03g15064 Brassica carinata HOM05D003810 ORTHO05D004416 9.4e-57 224.2 204 55.4
C02p26210 Brassica napus HOM05D003810 ORTHO05D004416 9.4e-57 224.2 204 55.4
BolC2t08687H Brassica oleracea HOM05D003810 ORTHO05D004416 9.4e-57 224.2 204 55.4
BcaB05g24435 Brassica carinata HOM05D003810 ORTHO05D004416 1.2e-56 223.8 204 55.9
Carub.0001s4426 Capsella rubella HOM05D003810 ORTHO05D004416 2.1e-56 223.0 203 55.7
PGR042G2745 Punica granatum HOM05D003810 ORTHO05D004416 8.0e-56 221.1 206 55.3
TAR627G1127 Trochodendron aralioides HOM05D003810 ORTHO05D004416 1.0e-55 220.7 176 63.1
AT3G61420 Arabidopsis thaliana HOM05D003810 ORTHO05D004416 1.4e-55 220.3 204 55.9
CARHR045410 Cardamine hirsuta HOM05D003810 ORTHO05D004416 1.4e-55 220.3 203 55.7
Thhalv10011333m.g Eutrema salsugineum HOM05D003810 ORTHO05D004416 3.0e-55 219.2 204 55.4
AL5G43720 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 4.0e-55 218.8 204 55.9
Psat6g170400 Pisum sativum HOM05D003810 ORTHO05D004416 1.5e-54 216.9 206 55.8
HPP92_028601 Vanilla planifolia HOM05D003810 ORTHO05D004416 2.6e-54 216.1 206 57.8
CARHR219980 Cardamine hirsuta HOM05D003810 ORTHO05D004416 2.0e-51 206.5 207 54.6
Medtr6g071555 Medicago truncatula HOM05D003810 ORTHO05D004416 4.5e-51 205.3 203 53.7
Aqoxy7G03331 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 1.3e-50 203.8 185 55.7
Nn2g14662 Nelumbo nucifera HOM05D003810 ORTHO05D004416 1.4e-47 193.7 206 51.9
Os08g0338200 Oryza sativa ssp. japonica HOM05D003810 ORTHO05D004416 8.9e-47 191.0 206 49.5
MD08G1246400 Malus domestica HOM05D003810 ORTHO05D004416 1.5e-46 190.3 165 59.4
Lj3A773G17 Lonicera japonica HOM05D003810 ORTHO05D004416 7.5e-46 188.0 206 51.0
Glyma.10G193000 Glycine max HOM05D003810 ORTHO05D004416 6.3e-45 184.9 206 50.5
SGA_v2.0_scaffold146G36126 Striga asiatica HOM05D003810 ORTHO05D004416 1.4e-44 183.7 207 49.8
DCAR_017597 Daucus carota HOM05D003810 ORTHO05D004416 1.6e-43 180.3 206 48.5
AUR62015172 Chenopodium quinoa HOM05D003810 ORTHO05D004416 2.0e-43 179.9 204 50.0
FvH4_5g28910 Fragaria vesca HOM05D003810 ORTHO05D004416 2.0e-43 179.9 149 61.7
BcaB07g33855 Brassica carinata HOM05D003810 ORTHO05D004416 2.2e-37 159.8 189 47.1
CDE04G2581 Ceratophyllum demersum HOM05D003810 ORTHO05D004416 6.4e-37 158.3 206 46.6
Thhalv10011448m.g Eutrema salsugineum HOM05D003810 ORTHO05D004416 6.0e-35 151.8 205 47.8
AT1G55750 Arabidopsis thaliana HOM05D003810 ORTHO05D004416 5.0e-34 148.7 151 51.0
Mapoly0009s0093 Marchantia polymorpha HOM05D003810 ORTHO05D004416 2.1e-32 143.3 204 39.7
Pp3c26_14480 Physcomitrium patens HOM05D003810 ORTHO05D004416 3.6e-32 142.5 207 34.8
AagrBONN_evm.TU.Sc2ySwM_117.3105 Anthoceros agrestis HOM05D003810 ORTHO05D004416 1.4e-31 140.6 205 39.0
FAN09G2262 Fragaria x ananassa HOM05D003810 ORTHO05D004416 5.8e-30 135.2 188 45.7
SMO228G0023 Selaginella moellendorffii HOM05D003810 ORTHO05D004416 7.5e-30 134.8 185 40.5
FAN14G4445 Fragaria x ananassa HOM05D003810 ORTHO05D004416 2.2e-29 133.3 186 45.2
QL04p000617 Quercus lobata HOM05D003810 ORTHO05D004416 8.3e-29 131.3 123 56.1
Lj3g0026478 Lotus japonicus HOM05D003810 ORTHO05D004416 1.6e-27 127.1 152 47.4
Sabra05G0051600 Salix brachista HOM05D003810 ORTHO05D004416 1.3e-26 124.0 170 48.2
TPR.G30194 Trifolium pratense HOM05D003810 ORTHO05D004416 2.3e-26 123.2 187 42.8
BcaC08g42928 Brassica carinata HOM05D003810 ORTHO05D004416 3.0e-26 122.9 203 38.9
SMO031G0001 Selaginella moellendorffii HOM05D003810 ORTHO05D004416 2.1e-24 116.7 121 46.3
FAN02G0356 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.7e-21 107.1 194 40.7
FAN02G0111 Fragaria x ananassa HOM05D003810 ORTHO05D004416 9.2e-20 101.3 201 39.3
Lj3C711T10 Lonicera japonica HOM05D003810 ORTHO05D004416 1.2e-19 100.9 98 55.1
SalBow3G3831 Salvia bowleyana HOM05D003810 ORTHO05D004416 1.2e-19 100.9 132 49.2
SHI21696 Sapria himalayana HOM05D003810 ORTHO05D004416 3.5e-19 99.4 108 51.9
Hma1.2p1_2995F.1_g331440 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 3.9e-18 95.9 203 36.0
TAR629G2180 Trochodendron aralioides HOM05D003810 ORTHO05D004416 3.9e-18 95.9 65 67.7
QL12p013194 Quercus lobata HOM05D003810 ORTHO05D004416 1.2e-16 90.9 83 59.0
BolC6t35297H Brassica oleracea HOM05D003810 ORTHO05D004416 3.4e-14 82.8 120 40.8
TAR629G3163 Trochodendron aralioides HOM05D003810 ORTHO05D004416 2.4e-12 76.6 62 61.3
ClCG09G022970 Citrullus lanatus HOM05D003810 ORTHO05D004416 5.4e-12 75.5 62 61.3
SalBow3G0229 Salvia bowleyana HOM05D003810 ORTHO05D004416 1.6e-11 73.9 112 42.0
Zm00001eb172700 Zea mays HOM05D003810 ORTHO05D004416 4.6e-11 72.4 88 46.6
TPR.G30768 Trifolium pratense HOM05D003810 ORTHO05D004416 6.6e-10 68.6 55 60.0
A07p35570 Brassica napus HOM05D003810 ORTHO05D004416 4.7e-08 62.4 51 64.7
BraA07t31145Z Brassica rapa HOM05D003810 ORTHO05D004416 4.7e-08 62.4 51 64.7
Prupe.5G213500 Prunus persica HOM05D003810 ORTHO05D004416 9.0e-07 58.2 85 44.7
Nitab4.5_0001303g0160 Nicotiana tabacum HOM05D003810 ORTHO05D004416 1.2e-06 57.8 46 56.5
Hund17711 Selenicereus undatus HOM05D003810 ORTHO05D004416 3.4e-06 56.2 40 62.5
FAN02G2818 Fragaria x ananassa HOM05D003810 ORTHO05D004416 5.8e-06 55.5 99 39.4


User provided reference genes

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