Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G020600 Populus trichocarpa HOM05D006444 ORTHO05D007748 2.8e-191 671.8 338 100.0
Sabra05G0026600 Salix brachista HOM05D006444 ORTHO05D007748 1.7e-172 609.4 338 91.4
Manes.09G174800 Manihot esculenta HOM05D006444 ORTHO05D007748 2.2e-127 459.5 334 70.4
Dinv30860 Davidia involucrata HOM05D006444 ORTHO05D007748 5.0e-124 448.4 334 67.1
Haze_04092 Corylus avellana HOM05D006444 ORTHO05D007748 1.7e-111 406.8 337 62.6
Thecc.05G319500 Theobroma cacao HOM05D006444 ORTHO05D007748 3.2e-110 402.5 335 63.0
GSVIVG01031202001 Vitis vinifera HOM05D006444 ORTHO05D007748 9.2e-110 401.0 329 61.1
QL03p017976 Quercus lobata HOM05D006444 ORTHO05D007748 3.5e-109 399.1 333 63.4
vmacro01541 Vaccinium macrocarpon HOM05D006444 ORTHO05D007748 3.5e-109 399.1 332 60.2
Rhsim11G0093000 Rhododendron simsii HOM05D006444 ORTHO05D007748 6.6e-108 394.8 332 60.2
CSS0047685 Camellia sinensis var. sinensis HOM05D006444 ORTHO05D007748 1.1e-107 394.0 334 60.5
COL.COLO4_04127 Corchorus olitorius HOM05D006444 ORTHO05D007748 1.5e-107 393.7 333 60.4
arahy.Tifrunner.gnm1.ann1.I0464U Arachis hypogaea HOM05D006444 ORTHO05D007748 5.6e-107 391.7 334 61.1
arahy.Tifrunner.gnm1.ann1.T18680 Arachis hypogaea HOM05D006444 ORTHO05D007748 1.2e-106 390.6 334 60.8
CiPaw.07G026800 Carya illinoinensis HOM05D006444 ORTHO05D007748 1.1e-105 387.5 322 64.9
Ciclev10001747m.g Citrus clementina HOM05D006444 ORTHO05D007748 1.4e-105 387.1 336 61.6
Medtr7g112320 Medicago truncatula HOM05D006444 ORTHO05D007748 1.8e-105 386.7 334 61.1
Eucgr.H03280 Eucalyptus grandis HOM05D006444 ORTHO05D007748 1.3e-103 380.6 334 58.7
Gohir.A08G207200 Gossypium hirsutum HOM05D006444 ORTHO05D007748 2.9e-103 379.4 335 58.5
PGR031G3221 Punica granatum HOM05D006444 ORTHO05D007748 1.4e-102 377.1 334 58.4
Hma1.2p1_0472F.1_g159820 Hydrangea macrophylla HOM05D006444 ORTHO05D007748 1.9e-102 376.7 350 58.0
Glyma.19G230000 Glycine max HOM05D006444 ORTHO05D007748 1.6e-101 373.6 334 60.5
Cpa.g.sc48.132 Carica papaya HOM05D006444 ORTHO05D007748 4.6e-101 372.1 379 52.0
Ca_09322_v3 Cicer arietinum L. HOM05D006444 ORTHO05D007748 4.6e-101 372.1 334 59.6
Lalb_Chr18g0045971 Lupinus albus HOM05D006444 ORTHO05D007748 6.0e-101 371.7 330 59.7
Peaxi162Scf00073g00128 Petunia axillaris HOM05D006444 ORTHO05D007748 1.3e-100 370.5 332 59.9
VMungo1383G3166 Vigna mungo HOM05D006444 ORTHO05D007748 3.9e-100 369.0 334 58.4
Glyma.03G233000 Glycine max HOM05D006444 ORTHO05D007748 6.6e-100 368.2 334 59.3
Nitab4.5_0014337g0020 Nicotiana tabacum HOM05D006444 ORTHO05D007748 8.6e-100 367.9 335 59.7
Gorai.004G237700 Gossypium raimondii HOM05D006444 ORTHO05D007748 1.5e-99 367.1 335 56.7
Prupe.6G316100 Prunus persica HOM05D006444 ORTHO05D007748 1.9e-99 366.7 335 59.4
TPR.G1652 Trifolium pratense HOM05D006444 ORTHO05D007748 1.9e-99 366.7 334 58.4
Sed0009356 Sechium edule HOM05D006444 ORTHO05D007748 2.5e-99 366.3 332 57.5
Gohir.D08G223800 Gossypium hirsutum HOM05D006444 ORTHO05D007748 3.3e-99 365.9 335 56.7
Lj1g0016861 Lotus japonicus HOM05D006444 ORTHO05D007748 1.6e-98 363.6 343 56.6
Phvul.001G226600 Phaseolus vulgaris HOM05D006444 ORTHO05D007748 2.1e-98 363.2 334 57.5
TWI56G1276 Tripterygium wilfordii HOM05D006444 ORTHO05D007748 8.1e-98 361.3 334 58.1
Atru.chr2.132 Acer truncatum HOM05D006444 ORTHO05D007748 4.0e-97 359.0 333 58.9
Nitab4.5_0002715g0070 Nicotiana tabacum HOM05D006444 ORTHO05D007748 4.0e-97 359.0 335 59.1
TAR365G0240 Trochodendron aralioides HOM05D006444 ORTHO05D007748 2.6e-96 356.3 356 55.6
DCAR_025267 Daucus carota HOM05D006444 ORTHO05D007748 4.4e-96 355.5 327 56.3
Cc10_g14110 Coffea canephora HOM05D006444 ORTHO05D007748 2.2e-95 353.2 330 57.9
ClCG03G017520 Citrullus lanatus HOM05D006444 ORTHO05D007748 6.4e-95 351.7 332 56.6
Hund21734 Selenicereus undatus HOM05D006444 ORTHO05D007748 6.4e-95 351.7 339 57.2
Oeu028007.2 Olea europaea HOM05D006444 ORTHO05D007748 1.4e-94 350.5 336 56.2
Sopen01g043670 Solanum pennellii HOM05D006444 ORTHO05D007748 2.4e-94 349.7 335 57.9
MELO3C015276.2 Cucumis melo HOM05D006444 ORTHO05D007748 5.4e-94 348.6 328 54.6
CsaV3_1G038500 Cucumis sativus L. HOM05D006444 ORTHO05D007748 1.3e-92 344.0 328 54.6
PGSC0003DMG400024779 Solanum tuberosum HOM05D006444 ORTHO05D007748 1.3e-92 344.0 356 54.8
EL10Ac4g09842 Beta vulgaris HOM05D006444 ORTHO05D007748 1.9e-91 340.1 336 56.2
Oeu045894.1 Olea europaea HOM05D006444 ORTHO05D007748 1.6e-90 337.0 317 55.8
CAN.G1273.16 Capsicum annuum HOM05D006444 ORTHO05D007748 5.2e-89 332.0 367 52.6
Lsat_1_v5_gn_7_73840 Lactuca sativa HOM05D006444 ORTHO05D007748 8.9e-89 331.3 336 52.1
FAN05G1290 Fragaria x ananassa HOM05D006444 ORTHO05D007748 7.6e-88 328.2 331 53.2
FAN14G0724 Fragaria x ananassa HOM05D006444 ORTHO05D007748 9.9e-88 327.8 331 52.9
FvH4_6g07110 Fragaria vesca HOM05D006444 ORTHO05D007748 3.8e-87 325.9 331 52.6
RcHm_v2.0_Chr3g0456691 Rosa chinensis HOM05D006444 ORTHO05D007748 6.4e-87 325.1 331 53.8
MSTRG.20391 Avicennia marina HOM05D006444 ORTHO05D007748 4.2e-86 322.4 341 51.9
THA.LOC104818740 Tarenaya hassleriana HOM05D006444 ORTHO05D007748 3.5e-85 319.3 332 52.7
FAN02G1429 Fragaria x ananassa HOM05D006444 ORTHO05D007748 1.0e-84 317.8 331 52.3
Phvul.007G199800 Phaseolus vulgaris HOM05D006444 ORTHO05D007748 3.9e-84 315.8 335 52.2
Nn4g25689 Nelumbo nucifera HOM05D006444 ORTHO05D007748 3.3e-83 312.8 348 50.9
VMungo0720G1741 Vigna mungo HOM05D006444 ORTHO05D007748 1.3e-82 310.8 336 51.8
Glyma.10G148900 Glycine max HOM05D006444 ORTHO05D007748 1.6e-82 310.5 335 52.2
Lj5A342G70 Lonicera japonica HOM05D006444 ORTHO05D007748 5.3e-81 305.4 277 59.2
Nn3g21596 Nelumbo nucifera HOM05D006444 ORTHO05D007748 5.3e-81 305.4 346 49.7
SGA_v2.0_scaffold4G01962 Striga asiatica HOM05D006444 ORTHO05D007748 6.9e-81 305.1 342 50.6
Migut.B00986 Erythranthe guttata HOM05D006444 ORTHO05D007748 9.9e-80 301.2 353 49.3
Psat3g013840 Pisum sativum HOM05D006444 ORTHO05D007748 1.7e-79 300.4 265 59.6
CANSAT54G2069 Cannabis sativa HOM05D006444 ORTHO05D007748 1.1e-78 297.7 330 51.2
ECA236G3124 Erigeron canadensis HOM05D006444 ORTHO05D007748 1.1e-78 297.7 332 49.4
HanXRQChr15g0495151 Helianthus annuus HOM05D006444 ORTHO05D007748 7.1e-78 295.0 337 50.1
Sp2g21090 Schrenkiella parvula HOM05D006444 ORTHO05D007748 3.5e-77 292.7 330 51.8
AUR62005256 Chenopodium quinoa HOM05D006444 ORTHO05D007748 5.1e-76 288.9 310 54.2
AUR62000705 Chenopodium quinoa HOM05D006444 ORTHO05D007748 5.6e-75 285.4 310 53.2
SalBow7G4019 Salvia bowleyana HOM05D006444 ORTHO05D007748 4.8e-74 282.3 319 48.9
A06p37110 Brassica napus HOM05D006444 ORTHO05D007748 1.2e-72 277.7 333 49.5
BraA06t26637Z Brassica rapa HOM05D006444 ORTHO05D007748 1.2e-72 277.7 333 49.5
PSO170G3086 Papaver somniferum HOM05D006444 ORTHO05D007748 2.0e-72 276.9 352 46.6
BolC7t44660H Brassica oleracea HOM05D006444 ORTHO05D007748 5.8e-72 275.4 333 49.2
Thhalv10004624m.g Eutrema salsugineum HOM05D006444 ORTHO05D007748 9.9e-72 274.6 332 49.7
Aa31LG11G9750 Aethionema arabicum HOM05D006444 ORTHO05D007748 1.7e-71 273.9 331 50.2
AT5G26940 Arabidopsis thaliana HOM05D006444 ORTHO05D007748 2.2e-71 273.5 330 49.4
PSO357G0038 Papaver somniferum HOM05D006444 ORTHO05D007748 3.8e-71 272.7 352 46.0
ATR0706G081 Amborella trichopoda HOM05D006444 ORTHO05D007748 1.1e-70 271.2 309 47.9
Thecc.04G293900 Theobroma cacao HOM05D006444 ORTHO05D007748 7.1e-70 268.5 336 44.9
CARHR186630 Cardamine hirsuta HOM05D006444 ORTHO05D007748 2.7e-69 266.5 330 47.6
CDE09G1197 Ceratophyllum demersum HOM05D006444 ORTHO05D007748 6.0e-69 265.4 203 63.5
AL6G38850 Arabidopsis lyrata HOM05D006444 ORTHO05D007748 7.9e-69 265.0 333 49.2
Carub.0006s2458 Capsella rubella HOM05D006444 ORTHO05D007748 3.9e-68 262.7 329 46.8
C07p41320 Brassica napus HOM05D006444 ORTHO05D007748 6.7e-68 261.9 358 45.8
Duzib151G0636 Durio zibethinus HOM05D006444 ORTHO05D007748 3.3e-67 259.6 346 45.4
Aqoxy2G02847 Aquilegia oxysepala HOM05D006444 ORTHO05D007748 6.2e-66 255.4 354 44.9
Sc16g0008870 Simmondsia chinensis HOM05D006444 ORTHO05D007748 1.4e-65 254.2 267 53.2
Ciclev10005435m.g Citrus clementina HOM05D006444 ORTHO05D007748 4.9e-63 245.7 333 46.5
CDE02G1332 Ceratophyllum demersum HOM05D006444 ORTHO05D007748 1.1e-62 244.6 258 50.8
unitig_46.g18373 Utricularia gibba HOM05D006444 ORTHO05D007748 1.1e-62 244.6 340 45.3
HPP92_011867 Vanilla planifolia HOM05D006444 ORTHO05D007748 6.3e-58 228.8 270 46.7
MBI19_g14287_MAGBIO Magnolia biondii HOM05D006444 ORTHO05D007748 2.4e-57 226.9 245 51.4
Zm00001eb014130 Zea mays HOM05D006444 ORTHO05D007748 2.6e-56 223.4 272 46.3
Prupe.1G126500 Prunus persica HOM05D006444 ORTHO05D007748 5.9e-56 222.2 235 50.2
Hund21730 Selenicereus undatus HOM05D006444 ORTHO05D007748 1.3e-55 221.1 303 44.9
Actinidia35534 Actinidia chinensis HOM05D006444 ORTHO05D007748 1.7e-55 220.7 213 55.4
Os03g0301400 Oryza sativa ssp. japonica HOM05D006444 ORTHO05D007748 8.5e-55 218.4 273 45.4
MD13G1159900 Malus domestica HOM05D006444 ORTHO05D007748 1.9e-54 217.2 249 49.4
RcHm_v2.0_Chr4g0424201 Rosa chinensis HOM05D006444 ORTHO05D007748 7.2e-54 215.3 246 49.6
MD12G1208900 Malus domestica HOM05D006444 ORTHO05D007748 1.3e-50 204.5 199 57.3
TAR362G0047 Trochodendron aralioides HOM05D006444 ORTHO05D007748 2.4e-49 200.3 208 51.4
Os04g0623400 Oryza sativa ssp. japonica HOM05D006444 ORTHO05D007748 1.4e-44 184.5 196 51.0
AagrBONN_evm.TU.Sc2ySwM_344.4230 Anthoceros agrestis HOM05D006444 ORTHO05D007748 1.1e-41 174.9 198 47.5
FAN07G1328 Fragaria x ananassa HOM05D006444 ORTHO05D007748 3.4e-40 169.9 234 43.6
FvH4_4g19220 Fragaria vesca HOM05D006444 ORTHO05D007748 3.8e-39 166.4 233 42.9
SMO116G0265 Selaginella moellendorffii HOM05D006444 ORTHO05D007748 5.0e-39 166.0 207 44.4
Mapoly0162s0013 Marchantia polymorpha HOM05D006444 ORTHO05D007748 3.2e-38 163.3 204 46.1
FAN12G3514 Fragaria x ananassa HOM05D006444 ORTHO05D007748 6.7e-36 155.6 233 41.6
FAN12G0061 Fragaria x ananassa HOM05D006444 ORTHO05D007748 1.1e-35 154.8 233 41.6
SEGI_10576 Sequoiadendron giganteum HOM05D006444 ORTHO05D007748 9.7e-35 151.8 150 52.7
MD12G1209000 Malus domestica HOM05D006444 ORTHO05D007748 4.8e-34 149.4 136 59.6
FAN09G3591 Fragaria x ananassa HOM05D006444 ORTHO05D007748 2.2e-31 140.6 141 52.5
Pp3c18_14120 Physcomitrium patens HOM05D001061 ORTHO05D007748 2.9e-31 140.2 208 38.9
Atru.chr4.2940 Acer truncatum HOM05D006444 ORTHO05D007748 8.8e-28 128.6 126 51.6
MCO01G157 Micromonas commoda HOM05D005236 ORTHO05D006557 5.9e-24 115.9 180 41.1
EL10Ac4g09387 Beta vulgaris HOM05D006444 ORTHO05D007748 9.8e-19 98.6 86 64.0
Actinidia35535 Actinidia chinensis HOM05D006444 ORTHO05D007748 2.8e-18 97.1 84 60.7
PRCOL_00002449 Prasinoderma coloniale HOM05D005236 ORTHO05D006557 2.6e-11 73.9 210 30.0
SEGI_25648 Sequoiadendron giganteum HOM05D006444 ORTHO05D007748 1.1e-06 58.5 69 49.3


User provided reference genes

Program Settings