Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G229200 Populus trichocarpa HOM05D005817 ORTHO05D007140 7.3e-133 477.2 243 100.0
Sabra01G0174300 Salix brachista HOM05D005817 ORTHO05D007140 9.5e-125 450.3 248 93.1
Manes.10G106400 Manihot esculenta HOM05D005817 ORTHO05D007140 9.5e-109 397.1 251 81.3
Thecc.06G019900 Theobroma cacao HOM05D005817 ORTHO05D007140 3.6e-108 395.2 243 83.1
Gohir.D06G122800 Gossypium hirsutum HOM05D005817 ORTHO05D007140 1.8e-107 392.9 243 82.3
Gohir.A06G115800 Gossypium hirsutum HOM05D005817 ORTHO05D007140 2.4e-107 392.5 243 82.7
Manes.07G030600 Manihot esculenta HOM05D005817 ORTHO05D007140 4.0e-107 391.7 247 80.6
Gorai.010G142900 Gossypium raimondii HOM05D005817 ORTHO05D007140 5.2e-107 391.3 243 81.9
Prupe.1G585700 Prunus persica HOM05D005817 ORTHO05D007140 1.1e-104 383.6 252 78.6
Duzib160G0844 Durio zibethinus HOM05D005817 ORTHO05D007140 2.4e-104 382.5 243 80.7
COL.COLO4_31118 Corchorus olitorius HOM05D005817 ORTHO05D007140 1.6e-103 379.8 244 79.1
Ca_13529_v3 Cicer arietinum L. HOM05D005817 ORTHO05D007140 2.1e-103 379.4 253 77.9
CsaV3_5G027420 Cucumis sativus L. HOM05D005817 ORTHO05D007140 1.7e-102 376.3 253 77.9
CANSAT01G0715 Cannabis sativa HOM05D005817 ORTHO05D007140 3.9e-102 375.2 249 79.5
Lalb_Chr07g0176811 Lupinus albus HOM05D005817 ORTHO05D007140 6.6e-102 374.4 253 76.3
GSVIVG01023145001 Vitis vinifera HOM05D005817 ORTHO05D007140 6.6e-102 374.4 256 76.6
Atru.chr6.226 Acer truncatum HOM05D005817 ORTHO05D007140 1.9e-101 372.9 251 77.3
MD08G1248300 Malus domestica HOM05D005817 ORTHO05D007140 1.9e-101 372.9 252 75.4
Lj4g0018327 Lotus japonicus HOM05D005817 ORTHO05D007140 2.5e-101 372.5 253 76.3
RcHm_v2.0_Chr7g0219661 Rosa chinensis HOM05D005817 ORTHO05D007140 5.6e-101 371.3 252 76.2
FvH4_5g27830 Fragaria vesca HOM05D005817 ORTHO05D007140 8.1e-100 367.5 253 74.7
FAN18G1253 Fragaria x ananassa HOM05D005817 ORTHO05D007140 8.1e-100 367.5 253 74.7
MD15G1443200 Malus domestica HOM05D005817 ORTHO05D007140 1.1e-99 367.1 257 73.9
QL02p103359 Quercus lobata HOM05D005817 ORTHO05D007140 1.1e-99 367.1 246 76.4
Phvul.003G075900 Phaseolus vulgaris HOM05D005817 ORTHO05D007140 1.4e-99 366.7 252 75.4
PGR142G3472 Punica granatum HOM05D005817 ORTHO05D007140 1.8e-99 366.3 250 76.4
CiPaw.06G176700 Carya illinoinensis HOM05D005817 ORTHO05D007140 5.3e-99 364.8 253 75.5
Haze_09983 Corylus avellana HOM05D005817 ORTHO05D007140 9.0e-99 364.0 254 74.0
Eucgr.I02797 Eucalyptus grandis HOM05D005817 ORTHO05D007140 9.0e-99 364.0 253 75.1
TAR628G1209 Trochodendron aralioides HOM05D005817 ORTHO05D007140 9.0e-99 364.0 254 74.8
MBI06_g16620_MAGBIO Magnolia biondii HOM05D005817 ORTHO05D007140 1.5e-98 363.2 256 74.6
Sed0006174 Sechium edule HOM05D005817 ORTHO05D007140 3.4e-98 362.1 254 74.8
TAR376G0556 Trochodendron aralioides HOM05D005817 ORTHO05D007140 3.4e-98 362.1 258 74.4
Ciclev10002025m.g Citrus clementina HOM05D005817 ORTHO05D007140 4.4e-98 361.7 251 76.5
arahy.Tifrunner.gnm1.ann1.86KQ48 Arachis hypogaea HOM05D005817 ORTHO05D007140 9.9e-98 360.5 271 70.1
PSO017G5300 Papaver somniferum HOM05D005817 ORTHO05D007140 1.3e-97 360.1 256 72.7
TWI14G0757 Tripterygium wilfordii HOM05D005817 ORTHO05D007140 1.7e-97 359.8 249 76.3
Glyma.17G001900 Glycine max HOM05D005817 ORTHO05D007140 2.9e-97 359.0 253 75.1
PSO170G5162 Papaver somniferum HOM05D005817 ORTHO05D007140 3.8e-97 358.6 256 72.3
Psat4g000960 Pisum sativum HOM05D005817 ORTHO05D007140 3.8e-97 358.6 253 74.7
arahy.Tifrunner.gnm1.ann1.NEQE4P Arachis hypogaea HOM05D005817 ORTHO05D007140 4.9e-97 358.2 271 69.7
Nn5g27184 Nelumbo nucifera HOM05D005817 ORTHO05D007140 6.4e-97 357.8 254 72.4
Cc02_g23610 Coffea canephora HOM05D005817 ORTHO05D007140 1.4e-96 356.7 255 73.3
THA.LOC104824089 Tarenaya hassleriana HOM05D005817 ORTHO05D007140 1.9e-96 356.3 241 75.5
TPR.G6004 Trifolium pratense HOM05D005817 ORTHO05D007140 2.4e-96 355.9 248 74.6
Aqoxy6G00025 Aquilegia oxysepala HOM05D005817 ORTHO05D007140 7.1e-96 354.4 256 73.0
Hma1.2p1_0052F.1_g030020 Hydrangea macrophylla HOM05D005817 ORTHO05D007140 1.6e-95 353.2 258 72.1
Glyma.07G272500 Glycine max HOM05D005817 ORTHO05D007140 2.1e-95 352.8 252 73.8
Rhsim05G0115500 Rhododendron simsii HOM05D005817 ORTHO05D007140 2.1e-95 352.8 256 71.1
Actinidia01635 Actinidia chinensis HOM05D005817 ORTHO05D007140 2.7e-95 352.4 246 74.0
Medtr4g134630 Medicago truncatula HOM05D005817 ORTHO05D007140 4.6e-95 351.7 248 73.8
Oeu028475.1 Olea europaea HOM05D005817 ORTHO05D007140 1.0e-94 350.5 254 71.3
Hund15375 Selenicereus undatus HOM05D005817 ORTHO05D007140 1.7e-94 349.7 248 73.4
Oeu028476.1 Olea europaea HOM05D005817 ORTHO05D007140 3.9e-94 348.6 254 70.9
CSS0044256 Camellia sinensis var. sinensis HOM05D005817 ORTHO05D007140 1.1e-93 347.1 255 70.6
Dinv29679 Davidia involucrata HOM05D005817 ORTHO05D007140 1.1e-93 347.1 257 72.0
vmacro19830 Vaccinium macrocarpon HOM05D005817 ORTHO05D007140 3.3e-93 345.5 256 70.3
Sp2g13800 Schrenkiella parvula HOM05D005817 ORTHO05D007140 4.3e-93 345.1 252 75.0
Lj9C259G5 Lonicera japonica HOM05D001465 ORTHO05D001434 5.6e-93 344.7 258 71.3
Sc03g0006230 Simmondsia chinensis HOM05D005817 ORTHO05D007140 1.4e-91 340.1 211 79.6
EL10Ac6g13990 Beta vulgaris HOM05D005817 ORTHO05D007140 1.8e-91 339.7 254 70.1
CDE07G1199 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 2.4e-91 339.3 253 71.1
Migut.N00865 Erythranthe guttata HOM05D005817 ORTHO05D007140 2.4e-91 339.3 251 71.3
AT2G02570 Arabidopsis thaliana HOM05D005817 ORTHO05D007140 4.0e-91 338.6 251 69.3
CDE08G0344 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 6.9e-91 337.8 245 72.7
Nitab4.5_0007689g0010 Nicotiana tabacum HOM05D005817 ORTHO05D007140 1.2e-90 337.0 253 69.6
VMungo1215G1434 Vigna mungo HOM05D005817 ORTHO05D007140 1.2e-90 337.0 207 81.2
AL5G11840 Arabidopsis lyrata HOM05D005817 ORTHO05D007140 3.4e-90 335.5 251 68.9
FAN04G1604 Fragaria x ananassa HOM05D005817 ORTHO05D007140 3.4e-90 335.5 321 58.6
PGSC0003DMG400020713 Solanum tuberosum HOM05D005817 ORTHO05D007140 4.5e-90 335.1 253 70.0
AUR62043876 Chenopodium quinoa HOM05D005817 ORTHO05D007140 5.8e-90 334.7 255 69.8
Solyc01g103020.4 Solanum lycopersicum HOM05D005817 ORTHO05D007140 5.8e-90 334.7 252 70.2
Carub.0005s0157 Capsella rubella HOM05D005817 ORTHO05D007140 9.9e-90 334.0 251 70.1
Thhalv10004677m.g Eutrema salsugineum HOM05D005817 ORTHO05D007140 2.2e-89 332.8 252 71.4
ClCG11G000310 Citrullus lanatus HOM05D005817 ORTHO05D007140 8.4e-89 330.9 246 73.2
HanXRQChr15g0469671 Helianthus annuus HOM05D005817 ORTHO05D007140 8.4e-89 330.9 260 69.6
Os08g0109900 Oryza sativa ssp. japonica HOM05D005817 ORTHO05D007140 8.4e-89 330.9 249 70.3
CAN.G855.54 Capsicum annuum HOM05D005817 ORTHO05D007140 1.1e-88 330.5 253 70.0
Ah.03g136770 Amaranthus hybridus HOM05D005817 ORTHO05D007140 1.9e-88 329.7 272 65.4
BcaC06g31224 Brassica carinata HOM05D005817 ORTHO05D007140 1.9e-88 329.7 244 72.5
AUR62032450 Chenopodium quinoa HOM05D005817 ORTHO05D007140 7.1e-88 327.8 283 63.3
SHI04993 Sapria himalayana HOM05D005817 ORTHO05D007140 9.3e-88 327.4 296 59.5
ATR1089G128 Amborella trichopoda HOM05D005817 ORTHO05D007140 1.2e-87 327.0 259 69.1
SGA_v2.0_scaffold8G04460 Striga asiatica HOM05D005817 ORTHO05D007140 1.6e-87 326.6 252 67.5
Aa31LG2G7570 Aethionema arabicum HOM05D005817 ORTHO05D007140 6.0e-87 324.7 233 73.4
BraA06t27241Z Brassica rapa HOM05D005817 ORTHO05D007140 1.3e-86 323.6 245 70.6
C07p33290 Brassica napus HOM05D005817 ORTHO05D007140 3.9e-86 322.0 244 70.9
BolC7t43840H Brassica oleracea HOM05D005817 ORTHO05D007140 3.9e-86 322.0 244 70.9
Peaxi162Scf00011g01920 Petunia axillaris HOM05D005817 ORTHO05D007140 3.9e-86 322.0 314 58.0
A02p33050 Brassica napus HOM05D005817 ORTHO05D007140 5.1e-86 321.6 244 71.7
Lsat_1_v5_gn_9_83341 Lactuca sativa HOM05D005817 ORTHO05D007140 1.1e-85 320.5 256 68.4
A06p43560 Brassica napus HOM05D005817 ORTHO05D007140 1.5e-85 320.1 244 70.1
BcaC03g17157 Brassica carinata HOM05D005817 ORTHO05D007140 7.4e-85 317.8 248 68.5
Sopen01g045430 Solanum pennellii HOM05D005817 ORTHO05D007140 2.8e-84 315.8 229 70.7
Lj5C284T7 Lonicera japonica HOM05D005817 ORTHO05D007140 5.3e-83 311.6 202 77.7
ECA236G3641 Erigeron canadensis HOM05D000284 ORTHO05D000805 2.2e-81 306.2 232 71.1
C02p50820 Brassica napus HOM05D005817 ORTHO05D007140 6.4e-81 304.7 243 68.3
unitig_22.g6849 Utricularia gibba HOM05D005817 ORTHO05D007140 7.1e-80 301.2 248 64.5
BolC2t11164H Brassica oleracea HOM05D005817 ORTHO05D007140 9.3e-80 300.8 246 67.1
FAN08G2336 Fragaria x ananassa HOM05D005817 ORTHO05D007140 7.9e-79 297.7 322 55.6
Mapoly0107s0026 Marchantia polymorpha HOM05D005817 ORTHO05D007140 2.8e-76 289.3 259 60.2
Hma1.2p1_0052F.1_g030010 Hydrangea macrophylla HOM05D005817 ORTHO05D007140 4.8e-76 288.5 185 79.5
Duzib235G1547 Durio zibethinus HOM05D005817 ORTHO05D007140 2.0e-74 283.1 191 77.0
BraA02t08326Z Brassica rapa HOM05D005817 ORTHO05D007140 9.3e-72 274.2 216 70.8
SMO117G0163 Selaginella moellendorffii HOM05D005817 ORTHO05D007140 9.3e-72 274.2 199 69.3
Pp3c10_3580 Physcomitrium patens HOM05D005817 ORTHO05D007140 8.7e-70 267.7 226 61.5
Pp3c10_3582 Physcomitrium patens HOM05D005817 ORTHO05D007140 8.7e-70 267.7 226 61.5
AagrBONN_evm.TU.Sc2ySwM_117.207 Anthoceros agrestis HOM05D005817 ORTHO05D007140 1.5e-69 266.9 251 57.8
Lalb_Chr12g0195861 Lupinus albus HOM05D005817 ORTHO05D007140 9.7e-69 264.2 165 81.2
Cpa.g.sc173.14 Carica papaya HOM05D005817 ORTHO05D007140 5.3e-67 258.5 151 82.8
Actinidia26194 Actinidia chinensis HOM05D005817 ORTHO05D007140 1.2e-66 257.3 256 60.5
Pp3c1_22040 Physcomitrium patens HOM05D005817 ORTHO05D007140 5.9e-66 255.0 274 53.6
CDE04G1950 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 1.7e-65 253.4 197 68.0
Aqoxy385s001 Aquilegia oxysepala HOM05D005817 ORTHO05D007140 2.2e-65 253.1 253 58.9
RcHm_v2.0_Chr5g0068831 Rosa chinensis HOM05D005817 ORTHO05D007140 1.6e-63 246.9 154 84.4
Nitab4.5_0003247g0070 Nicotiana tabacum HOM05D005817 ORTHO05D007140 1.0e-62 244.2 200 66.5
CDE02G1227 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 5.1e-62 241.9 245 56.7
HPP92_002041 Vanilla planifolia HOM05D005817 ORTHO05D007140 2.0e-61 240.0 210 64.8
CBR_g40810 Chara braunii HOM05D005817 ORTHO05D007140 1.4e-59 233.8 238 55.0
Pp3c14_9240 Physcomitrium patens HOM05D005817 ORTHO05D007140 3.3e-53 212.6 194 58.8
MSTRG.27880 Avicennia marina HOM05D005817 ORTHO05D007140 5.3e-51 205.3 184 62.0
Zm00001eb174130 Zea mays HOM05D005817 ORTHO05D007140 1.5e-50 203.8 129 82.9
MSTRG.601 Avicennia marina HOM05D005817 ORTHO05D007140 5.9e-42 175.3 159 59.1
Dinv29634 Davidia involucrata HOM05D005817 ORTHO05D007140 3.0e-30 136.3 113 60.2
Cre02.g106550 Chlamydomonas reinhardtii HOM05D005817 ORTHO05D007140 7.0e-27 125.2 188 41.0
VMungo0766G0001 Vigna mungo HOM05D005817 ORTHO05D007140 1.3e-25 120.9 114 57.0
MCO12G229 Micromonas commoda HOM05D005817 ORTHO05D007140 2.7e-18 96.7 206 31.1
PRCOL_00002712 Prasinoderma coloniale HOM05D005817 ORTHO05D007140 4.3e-16 89.4 284 30.6
SEGI_07435 Sequoiadendron giganteum HOM05D005817 ORTHO05D007140 3.1e-14 83.2 106 47.2
COL.COLO4_38165 Corchorus olitorius HOM05D011921 ORTHO05D160408 1.7e-12 77.4 178 37.1
FvH4_3g40414 Fragaria vesca HOM05D005817 ORTHO05D007140 1.1e-11 74.7 50 70.0
Thhalv10005196m.g Eutrema salsugineum HOM05D005817 ORTHO05D007140 1.9e-11 73.9 52 75.0
CDE04G0373 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 2.3e-06 57.0 45 71.1
CARHR145100 Cardamine hirsuta HOM05D005817 ORTHO05D007140 3.1e-06 56.6 71 52.1


User provided reference genes

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