Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G122300 Populus trichocarpa HOM05D006539 ORTHO05D008694 5.9e-197 690.6 342 100.0
Sabra04G0067100 Salix brachista HOM05D006539 ORTHO05D008694 1.8e-153 546.2 281 94.7
Manes.02G050600 Manihot esculenta HOM05D006539 ORTHO05D008694 5.6e-131 471.5 369 68.8
FAN05G4473 Fragaria x ananassa HOM05D006539 ORTHO05D008694 1.8e-129 466.5 359 69.1
Atru.chr8.368 Acer truncatum HOM05D006539 ORTHO05D008694 5.8e-128 461.5 360 65.8
RcHm_v2.0_Chr2g0166661 Rosa chinensis HOM05D006539 ORTHO05D008694 9.9e-128 460.7 366 67.2
Prupe.3G259900 Prunus persica HOM05D006539 ORTHO05D008694 3.8e-127 458.8 369 65.6
GSVIVG01011483001 Vitis vinifera HOM05D006539 ORTHO05D008694 2.4e-126 456.1 370 67.0
MD17G1055800 Malus domestica HOM05D006539 ORTHO05D008694 2.5e-123 446.0 370 64.1
TWI32G0765 Tripterygium wilfordii HOM05D006539 ORTHO05D008694 2.5e-123 446.0 361 66.2
TAR371G0750 Trochodendron aralioides HOM05D006539 ORTHO05D008694 5.6e-123 444.9 290 75.9
Thecc.04G090200 Theobroma cacao HOM05D006539 ORTHO05D008694 1.3e-122 443.7 355 67.3
TAR371G0397 Trochodendron aralioides HOM05D006539 ORTHO05D008694 1.6e-122 443.4 289 75.1
Nn4g23332 Nelumbo nucifera HOM05D006539 ORTHO05D008694 3.6e-122 442.2 285 77.9
CANSAT64G0188 Cannabis sativa HOM05D006539 ORTHO05D008694 1.1e-121 440.7 371 63.3
THA.LOC104822345 Tarenaya hassleriana HOM05D006539 ORTHO05D008694 2.4e-121 439.5 369 64.2
Gorai.007G080900 Gossypium raimondii HOM05D006539 ORTHO05D008694 3.1e-121 439.1 349 67.0
Eucgr.I01991 Eucalyptus grandis HOM05D006539 ORTHO05D008694 4.0e-121 438.7 282 77.0
CAN.G206.194 Capsicum annuum HOM05D006539 ORTHO05D008694 1.5e-120 436.8 372 63.7
CiPaw.03G091900 Carya illinoinensis HOM05D006539 ORTHO05D008694 2.6e-120 436.0 378 63.8
FvH4_6g47560 Fragaria vesca HOM05D006539 ORTHO05D008694 2.6e-120 436.0 263 80.6
Lju41A8T108 Lonicera japonica HOM05D006539 ORTHO05D008694 1.3e-119 433.7 338 67.8
Duzib264G0172 Durio zibethinus HOM05D006539 ORTHO05D008694 1.7e-119 433.3 357 65.5
Gohir.A11G071300 Gossypium hirsutum HOM05D006539 ORTHO05D008694 2.9e-119 432.6 348 67.0
Rhsim10G0046900 Rhododendron simsii HOM05D006539 ORTHO05D008694 8.4e-119 431.0 281 75.1
CARHR197920 Cardamine hirsuta HOM05D006539 ORTHO05D008694 1.4e-118 430.3 351 64.4
Sopen02g033260 Solanum pennellii HOM05D006539 ORTHO05D008694 1.4e-118 430.3 375 62.1
Solyc02g088540.3 Solanum lycopersicum HOM05D006539 ORTHO05D008694 2.4e-118 429.5 375 62.1
Cpa.g.sc14.138 Carica papaya HOM05D006539 ORTHO05D008694 3.2e-118 429.1 363 63.9
PGR004G2004 Punica granatum HOM05D006539 ORTHO05D008694 5.4e-118 428.3 363 65.8
Lalb_Chr10g0093241 Lupinus albus HOM05D006539 ORTHO05D008694 6.0e-117 424.9 349 65.9
QL02p039353 Quercus lobata HOM05D006539 ORTHO05D008694 7.9e-117 424.5 278 76.3
PGSC0003DMG400001350 Solanum tuberosum HOM05D006539 ORTHO05D008694 1.0e-116 424.1 281 75.1
QL02p039600 Quercus lobata HOM05D006539 ORTHO05D008694 1.3e-116 423.7 278 76.3
vmacro05668 Vaccinium macrocarpon HOM05D006539 ORTHO05D008694 1.8e-116 423.3 290 72.4
Peaxi162Scf00166g00943 Petunia axillaris HOM05D006539 ORTHO05D008694 2.3e-116 422.9 357 62.7
CDE06G2615 Ceratophyllum demersum HOM05D006539 ORTHO05D008694 3.0e-116 422.5 293 71.3
ClCG10G015450 Citrullus lanatus HOM05D003516 ORTHO05D004068 6.7e-116 421.4 340 63.5
arahy.Tifrunner.gnm1.ann1.YFBV2Q Arachis hypogaea HOM05D006539 ORTHO05D008694 8.7e-116 421.0 276 74.3
Sp6g28700 Schrenkiella parvula HOM05D006539 ORTHO05D008694 2.5e-115 419.5 347 64.0
Sed0012723 Sechium edule HOM05D003516 ORTHO05D004068 3.3e-115 419.1 334 63.5
Medtr7g012240 Medicago truncatula HOM05D006539 ORTHO05D008694 5.6e-115 418.3 336 64.3
Aqoxy3G00450 Aquilegia oxysepala HOM05D006539 ORTHO05D008694 7.4e-115 417.9 282 72.7
DCAR_011065 Daucus carota HOM05D006539 ORTHO05D008694 1.3e-114 417.2 369 61.2
Glyma.08G241400 Glycine max HOM05D006539 ORTHO05D008694 1.6e-114 416.8 337 64.4
AT5G15390 Arabidopsis thaliana HOM05D006539 ORTHO05D008694 2.1e-114 416.4 343 63.6
Thhalv10013964m.g Eutrema salsugineum HOM05D006539 ORTHO05D008694 2.1e-114 416.4 345 62.3
MSTRG.23905 Avicennia marina HOM05D006539 ORTHO05D008694 2.8e-114 416.0 286 70.6
Cc07_g03820 Coffea canephora HOM05D006539 ORTHO05D008694 6.2e-114 414.8 291 71.8
AL6G26250 Arabidopsis lyrata HOM05D006539 ORTHO05D008694 8.1e-114 414.5 346 62.1
CsaV3_3G041040 Cucumis sativus L. HOM05D006539 ORTHO05D008694 1.4e-113 413.7 282 71.3
Gohir.D11G075300 Gossypium hirsutum HOM05D006539 ORTHO05D008694 1.4e-113 413.7 258 77.9
Carub.0006s1356 Capsella rubella HOM05D006539 ORTHO05D008694 9.0e-113 411.0 352 62.8
Aa31LG11G14170 Aethionema arabicum HOM05D006539 ORTHO05D008694 2.6e-112 409.5 277 71.5
Sc11g0004810 Simmondsia chinensis HOM05D006539 ORTHO05D008694 5.8e-112 408.3 355 63.9
Lsat_1_v5_gn_4_170180 Lactuca sativa HOM05D006539 ORTHO05D008694 7.6e-112 407.9 260 75.8
AUR62018139 Chenopodium quinoa HOM05D006539 ORTHO05D008694 1.3e-111 407.1 264 73.5
VMungo1383G3577 Vigna mungo HOM05D006539 ORTHO05D008694 1.3e-111 407.1 342 63.5
A10p23500 Brassica napus HOM05D006539 ORTHO05D008694 3.8e-111 405.6 359 59.6
BcaC04g24242 Brassica carinata HOM05D006539 ORTHO05D008694 4.9e-111 405.2 355 60.3
EL10Ac2g03043 Beta vulgaris HOM05D006539 ORTHO05D008694 8.4e-111 404.4 308 65.9
Phvul.008G040300 Phaseolus vulgaris HOM05D006539 ORTHO05D008694 1.1e-110 404.1 337 65.0
FAN14G0848 Fragaria x ananassa HOM05D006539 ORTHO05D008694 1.4e-110 403.7 354 63.8
Hund15564 Selenicereus undatus HOM05D006539 ORTHO05D008694 1.4e-110 403.7 244 78.3
BolC9t59012H Brassica oleracea HOM05D006539 ORTHO05D008694 1.9e-110 403.3 355 59.7
Migut.H00658 Erythranthe guttata HOM05D006539 ORTHO05D008694 1.9e-110 403.3 361 60.1
C09p61730 Brassica napus HOM05D006539 ORTHO05D008694 2.4e-110 402.9 355 59.7
Oeu000853.1 Olea europaea HOM05D006539 ORTHO05D008694 3.2e-110 402.5 361 59.8
Ca_06802_v3 Cicer arietinum L. HOM05D006539 ORTHO05D008694 5.5e-110 401.7 335 63.3
SGA_v2.0_scaffold4G02416 Striga asiatica HOM05D006539 ORTHO05D008694 9.3e-110 401.0 286 67.8
TPR.G33480 Trifolium pratense HOM05D006539 ORTHO05D008694 1.2e-109 400.6 330 63.9
SalBow1G8487 Salvia bowleyana HOM05D006539 ORTHO05D008694 1.6e-109 400.2 363 59.2
arahy.Tifrunner.gnm1.ann1.54MYG6 Arachis hypogaea HOM05D006539 ORTHO05D008694 3.5e-109 399.1 367 60.5
BraA10t44417Z Brassica rapa HOM05D006539 ORTHO05D008694 7.9e-109 397.9 368 58.2
ATR0111G028 Amborella trichopoda HOM05D006539 ORTHO05D008694 1.0e-108 397.5 289 67.5
Haze_14476 Corylus avellana HOM05D003516 ORTHO05D004068 1.1e-107 394.0 283 72.1
ECA232G1677 Erigeron canadensis HOM05D006539 ORTHO05D008694 1.5e-107 393.7 356 61.0
HanXRQChr09g0264131 Helianthus annuus HOM05D006539 ORTHO05D008694 1.3e-106 390.6 362 60.2
Lj1g0006679 Lotus japonicus HOM05D006539 ORTHO05D008694 2.1e-106 389.8 344 61.3
PSO478G0472 Papaver somniferum HOM05D006539 ORTHO05D008694 1.8e-105 386.7 365 58.1
Psat3g198480 Pisum sativum HOM05D006539 ORTHO05D008694 6.9e-105 384.8 374 57.0
Os07g0598100 Oryza sativa ssp. japonica HOM05D006539 ORTHO05D008694 1.2e-104 384.0 292 66.4
Zm00001eb326670 Zea mays HOM05D006539 ORTHO05D008694 1.5e-104 383.6 357 59.1
unitig_899.g15160 Utricularia gibba HOM05D006539 ORTHO05D008694 2.5e-102 376.3 273 66.3
Nitab4.5_0008573g0030 Nicotiana tabacum HOM05D006539 ORTHO05D008694 1.8e-100 370.2 379 54.6
AUR62034477 Chenopodium quinoa HOM05D006539 ORTHO05D008694 5.1e-100 368.6 452 48.5
HPP92_013411 Vanilla planifolia HOM05D006539 ORTHO05D008694 6.5e-95 351.7 271 66.1
SEGI_40704 Sequoiadendron giganteum HOM05D006539 ORTHO05D008694 4.8e-90 335.5 237 66.2
MELO3C009837.2 Cucumis melo HOM05D006539 ORTHO05D008694 2.1e-85 320.1 363 53.4
HPP92_006554 Vanilla planifolia HOM05D006539 ORTHO05D008694 4.1e-81 305.8 294 57.8
FAN09G1445 Fragaria x ananassa HOM05D006539 ORTHO05D008694 1.7e-79 300.4 358 51.1
Pp3c12_19160 Physcomitrium patens HOM05D006539 ORTHO05D008694 2.1e-77 293.5 236 58.5
AagrBONN_evm.TU.Sc2ySwM_117.170 Anthoceros agrestis HOM05D006539 ORTHO05D008694 8.0e-77 291.6 230 60.4
Ciclev10013894m.g Citrus clementina HOM05D006539 ORTHO05D008694 8.0e-77 291.6 268 57.8
Mapoly0088s0068 Marchantia polymorpha HOM05D006539 ORTHO05D008694 2.3e-76 290.0 245 57.6
SMO228G0204 Selaginella moellendorffii HOM05D006539 ORTHO05D008694 1.5e-70 270.8 236 53.4
SMO116G0014 Selaginella moellendorffii HOM05D006539 ORTHO05D008694 6.1e-69 265.4 238 53.8
Nitab4.5_0003216g0020 Nicotiana tabacum HOM05D006539 ORTHO05D008694 2.8e-66 256.5 381 44.1
CBR_g38172 Chara braunii HOM05D006539 ORTHO05D008694 8.2e-66 255.0 227 55.1
Dinv33805 Davidia involucrata HOM05D006539 ORTHO05D008694 9.1e-65 251.5 197 66.0
CSS0042966 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D008694 2.7e-64 250.0 179 69.8
arahy.Tifrunner.gnm1.ann1.B86ER2 Arachis hypogaea HOM05D006539 ORTHO05D009236 4.5e-64 249.2 214 59.3
CSS0047989 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D008694 1.0e-63 248.1 179 69.3
HPP92_013415 Vanilla planifolia HOM05D006539 ORTHO05D008694 4.1e-57 226.1 183 63.4
AUR62044515 Chenopodium quinoa HOM05D006539 ORTHO05D008694 4.2e-54 216.1 116 84.5
Ca_06844_v3 Cicer arietinum L. HOM05D006539 ORTHO05D008694 1.2e-48 198.0 171 60.8
Cre03.g169700 Chlamydomonas reinhardtii HOM05D006539 ORTHO05D008694 2.7e-48 196.8 237 38.8
Pp3c3_25470 Physcomitrium patens HOM05D006539 ORTHO05D008694 1.7e-47 194.1 168 52.4
FAN02G0136 Fragaria x ananassa HOM05D006539 ORTHO05D008694 2.5e-46 190.3 120 77.5
PRCOL_00002708 Prasinoderma coloniale HOM05D006539 ORTHO05D008694 5.6e-46 189.1 217 42.9
MCO16G092 Micromonas commoda HOM05D006539 ORTHO05D008694 1.1e-41 174.9 219 42.9
MD11G1144500 Malus domestica HOM05D006539 ORTHO05D008694 2.2e-34 150.6 230 42.2
CSS0026858 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D043354 6.0e-32 142.5 149 56.4
CSS0050509 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D043354 8.6e-31 138.7 159 52.8
MD07G1179900 Malus domestica HOM05D006539 ORTHO05D008694 7.3e-30 135.6 210 41.9
Ciclev10013255m.g Citrus clementina HOM05D006539 ORTHO05D008694 8.3e-26 122.1 75 81.3
QL02p073354 Quercus lobata HOM05D006539 ORTHO05D008694 3.0e-23 113.6 157 47.1
HPP92_013416 Vanilla planifolia HOM05D006539 ORTHO05D008694 2.1e-21 107.5 103 56.3
Cre09.g392950 Chlamydomonas reinhardtii HOM05D006539 ORTHO05D044332 2.1e-16 90.9 199 30.2
QL02p073352 Quercus lobata HOM05D006539 ORTHO05D008694 2.1e-16 90.9 67 70.1
MD07G1180000 Malus domestica HOM05D006539 ORTHO05D248072 1.4e-12 78.2 105 42.9
Cre05.g238950 Chlamydomonas reinhardtii HOM05D006695 ORTHO05D008239 5.4e-09 66.2 143 28.7
CARHR110310 Cardamine hirsuta HOM05D005801 ORTHO05D008555 7.1e-09 65.9 198 26.3
Pp3c22_4480 Physcomitrium patens HOM05D006695 ORTHO05D008239 7.1e-09 65.9 230 25.7
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 2.1e-08 64.3 142 29.6
Eucgr.H02435 Eucalyptus grandis HOM05D007191 ORTHO05D009370 2.7e-08 63.9 151 31.1
Glyma.17G020700 Glycine max HOM05D006695 ORTHO05D008239 2.7e-08 63.9 142 28.9
VMungo1215G2645 Vigna mungo HOM05D006695 ORTHO05D008239 3.5e-08 63.5 142 29.6
MCO01G306 Micromonas commoda HOM05D003893 ORTHO05D005167 7.8e-08 62.4 156 25.6
Carub.0003s3414 Capsella rubella HOM05D005801 ORTHO05D008555 1.3e-07 61.6 198 25.3
Ca_28666_v3 Cicer arietinum L. HOM05D005801 ORTHO05D009370 1.3e-07 61.6 142 30.3
Oeu044811.1 Olea europaea HOM05D006695 ORTHO05D008239 1.7e-07 61.2 150 28.7
A07p00840 Brassica napus HOM05D005801 ORTHO05D008555 2.3e-07 60.8 178 25.8
Phvul.003G098300 Phaseolus vulgaris HOM05D006695 ORTHO05D008239 2.3e-07 60.8 142 28.9
Migut.N00136 Erythranthe guttata HOM05D006695 ORTHO05D008239 3.0e-07 60.5 162 26.5
Lj4g0002890 Lotus japonicus HOM05D006695 ORTHO05D008239 3.0e-07 60.5 158 31.0
Prupe.1G146500 Prunus persica HOM05D006695 ORTHO05D008239 3.0e-07 60.5 141 30.5
Cc06_g10480 Coffea canephora HOM05D005801 ORTHO05D008555 3.9e-07 60.1 217 26.7
Potri.005G147600 Populus trichocarpa HOM05D007191 ORTHO05D009370 3.9e-07 60.1 151 31.1
Prupe.6G204900 Prunus persica HOM05D007191 ORTHO05D009370 3.9e-07 60.1 198 26.8
GSVIVG01015302001 Vitis vinifera HOM05D005801 ORTHO05D008555 3.9e-07 60.1 176 25.6
AT2G19870 Arabidopsis thaliana HOM05D005801 ORTHO05D008555 5.1e-07 59.7 198 24.2
BcaC06g36648 Brassica carinata HOM05D005801 ORTHO05D008555 6.6e-07 59.3 178 25.3
BolC7t40588H Brassica oleracea HOM05D005801 ORTHO05D008555 6.6e-07 59.3 178 25.3
BraA07t27882Z Brassica rapa HOM05D005801 ORTHO05D008555 6.6e-07 59.3 178 25.3
Sabra08G0162200 Salix brachista HOM05D006695 ORTHO05D008239 6.6e-07 59.3 142 28.9
SGA_v2.0_scaffold89G27581 Striga asiatica HOM05D006695 ORTHO05D008239 6.6e-07 59.3 150 28.7
CBR_g20364 Chara braunii HOM05D005801 ORTHO05D008555 8.7e-07 58.9 172 29.1
Lj4g0026970 Lotus japonicus HOM05D007191 ORTHO05D009370 1.1e-06 58.5 154 31.2
PRCOL_00001113 Prasinoderma coloniale HOM05D006695 ORTHO05D008239 1.1e-06 58.5 179 29.6
C07p01810 Brassica napus HOM05D005801 ORTHO05D008555 1.5e-06 58.2 178 25.8
Thhalv10002296m.g Eutrema salsugineum HOM05D005801 ORTHO05D008555 1.5e-06 58.2 198 24.7
MCO05G154 Micromonas commoda HOM05D006539 ORTHO05D044332 1.5e-06 58.2 218 23.4
Nitab4.5_0001703g0010 Nicotiana tabacum HOM05D005801 ORTHO05D008555 1.5e-06 58.2 201 25.4
BcaB03g16775 Brassica carinata HOM05D005801 ORTHO05D008555 1.9e-06 57.8 178 24.2
CDE04G1458 Ceratophyllum demersum HOM05D007191 ORTHO05D009370 1.9e-06 57.8 148 27.7
MD13G1177300 Malus domestica HOM05D006695 ORTHO05D008239 1.9e-06 57.8 141 29.1
SMO347G0043 Selaginella moellendorffii HOM05D006695 ORTHO05D008239 1.9e-06 57.8 142 27.5
AL3G48350 Arabidopsis lyrata HOM05D005801 ORTHO05D008555 3.3e-06 57.0 198 24.7
CiPaw.07G045700 Carya illinoinensis HOM05D007191 ORTHO05D009370 3.3e-06 57.0 151 30.5
HanXRQChr10g0318941 Helianthus annuus HOM05D005801 ORTHO05D008555 3.3e-06 57.0 182 26.9
HanXRQChr14g0438761 Helianthus annuus HOM05D005801 ORTHO05D008555 3.3e-06 57.0 182 26.9
Nitab4.5_0000402g0060 Nicotiana tabacum HOM05D007191 ORTHO05D009370 3.3e-06 57.0 151 29.1
Cre01.g027350 Chlamydomonas reinhardtii HOM05D003893 ORTHO05D005167 4.3e-06 56.6 152 25.7
Ciclev10025907m.g Citrus clementina HOM05D007191 ORTHO05D009370 4.3e-06 56.6 157 28.0
Mapoly0001s0064 Marchantia polymorpha HOM05D006695 ORTHO05D008239 4.3e-06 56.6 189 23.8
Sp3g33210 Schrenkiella parvula HOM05D005801 ORTHO05D008555 4.3e-06 56.6 198 24.2
SMO367G0373 Selaginella moellendorffii HOM05D005801 ORTHO05D008555 4.3e-06 56.6 143 30.8
SEGI_18217 Sequoiadendron giganteum HOM05D006695 ORTHO05D008239 4.3e-06 56.6 142 24.6
VMungo0251G2065 Vigna mungo HOM05D007191 ORTHO05D009370 4.3e-06 56.6 151 29.8
Phvul.003G287700 Phaseolus vulgaris HOM05D007191 ORTHO05D009370 5.6e-06 56.2 151 30.5
GSVIVG01003951001 Vitis vinifera HOM05D007191 ORTHO05D003232 5.6e-06 56.2 151 29.8
QL06p036361 Quercus lobata HOM05D007191 ORTHO05D009370 9.6e-06 55.5 151 29.8


User provided reference genes

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