Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G121400 Populus trichocarpa HOM05D004159 ORTHO05D005858 0.0e+00 1170.2 602 100.0
Sabra04G0067000 Salix brachista HOM05D004159 ORTHO05D005858 0.0e+00 1118.2 602 94.5
TWI56G0312 Tripterygium wilfordii HOM05D004159 ORTHO05D005858 1.4e-257 892.9 598 73.2
CSS0048893 Camellia sinensis var. sinensis HOM05D004159 ORTHO05D005858 2.0e-256 889.0 600 74.0
GSVIVG01032412001 Vitis vinifera HOM05D004159 ORTHO05D005858 1.4e-254 882.9 600 73.3
PGR142G2553 Punica granatum HOM05D004159 ORTHO05D005858 6.0e-253 877.5 601 72.7
Manes.17G112500 Manihot esculenta HOM05D004159 ORTHO05D005858 2.3e-252 875.5 605 73.4
Actinidia09406 Actinidia chinensis HOM05D004159 ORTHO05D005858 1.1e-251 873.2 600 72.3
CiPaw.04G028300 Carya illinoinensis HOM05D004159 ORTHO05D005858 5.6e-251 870.9 600 73.5
Eucgr.I01748 Eucalyptus grandis HOM05D004159 ORTHO05D005858 6.2e-250 867.5 594 72.4
CiPaw.03G043300 Carya illinoinensis HOM05D004159 ORTHO05D005858 2.3e-249 865.5 596 72.7
TAR371G0318 Trochodendron aralioides HOM05D004159 ORTHO05D005858 3.4e-248 861.7 599 71.6
TAR629G3285 Trochodendron aralioides HOM05D004159 ORTHO05D005858 4.4e-248 861.3 599 71.8
Rhsim10G0017800 Rhododendron simsii HOM05D004159 ORTHO05D005858 9.9e-248 860.1 600 71.7
Nn3g16747 Nelumbo nucifera HOM05D004159 ORTHO05D005858 4.9e-247 857.8 597 72.0
Haze_14736 Corylus avellana HOM05D004159 ORTHO05D005858 2.7e-245 852.0 600 71.5
Solyc07g047670.3 Solanum lycopersicum HOM05D004159 ORTHO05D005858 2.7e-245 852.0 599 71.0
Peaxi162Scf00700g00427 Petunia axillaris HOM05D004159 ORTHO05D005858 1.7e-244 849.4 600 71.3
Lj7C599T6 Lonicera japonica HOM05D004159 ORTHO05D005858 3.9e-244 848.2 594 71.0
Hma1.2p1_0078F.1_g040070 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 1.6e-242 842.8 593 71.2
PGSC0003DMG400006122 Solanum tuberosum HOM05D004159 ORTHO05D005858 1.6e-242 842.8 614 69.4
QL02p074797 Quercus lobata HOM05D004159 ORTHO05D005858 6.2e-242 840.9 600 69.8
Cfa007372 Carpinus fangiana HOM05D004159 ORTHO05D005858 5.2e-241 837.8 600 70.7
Cpa.g.sc108.65 Carica papaya HOM05D004159 ORTHO05D005858 8.9e-241 837.0 618 69.1
Cc07_g01750 Coffea canephora HOM05D004159 ORTHO05D005858 2.6e-240 835.5 598 70.4
vmacro05861 Vaccinium macrocarpon HOM05D004159 ORTHO05D005858 1.3e-239 833.2 635 67.6
CAN.G1819.1 Capsicum annuum HOM05D004159 ORTHO05D005858 2.4e-238 828.9 603 69.8
Thhalv10013046m.g Eutrema salsugineum HOM05D004159 ORTHO05D005858 4.2e-238 828.2 599 69.1
Atru.chr6.2388 Acer truncatum HOM05D004159 ORTHO05D005858 7.1e-238 827.4 605 70.2
MBI16_g23841_MAGBIO Magnolia biondii HOM05D004159 ORTHO05D005858 9.3e-238 827.0 599 68.6
BcaB01g05107 Brassica carinata HOM05D004159 ORTHO05D005858 4.6e-237 824.7 596 69.3
Ciclev10014699m.g Citrus clementina HOM05D004159 ORTHO05D005858 1.0e-236 823.5 601 69.1
Nitab4.5_0006221g0020 Nicotiana tabacum HOM05D004159 ORTHO05D005858 1.0e-236 823.5 627 67.6
MSTRG.20029 Avicennia marina HOM05D004159 ORTHO05D005858 1.3e-236 823.2 600 69.8
CANSAT64G2890 Cannabis sativa HOM05D004159 ORTHO05D005858 3.0e-236 822.0 595 68.7
Sp6g29490 Schrenkiella parvula HOM05D004159 ORTHO05D005858 3.9e-236 821.6 595 69.1
Thecc.04G016700 Theobroma cacao HOM05D004159 ORTHO05D005858 3.9e-236 821.6 599 68.9
C03p07700 Brassica napus HOM05D004159 ORTHO05D005858 5.1e-236 821.2 597 69.5
BolC3t13270H Brassica oleracea HOM05D004159 ORTHO05D005858 1.1e-235 820.1 597 69.2
THA.LOC104824006 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 7.3e-235 817.4 601 68.2
Sed0001839 Sechium edule HOM05D004159 ORTHO05D005858 2.8e-234 815.5 603 67.3
COL.COLO4_29105 Corchorus olitorius HOM05D004159 ORTHO05D005858 1.4e-233 813.1 588 69.2
A03p06670 Brassica napus HOM05D004159 ORTHO05D005858 2.4e-233 812.4 600 68.0
Duzib264G0191 Durio zibethinus HOM05D004159 ORTHO05D005858 4.0e-233 811.6 599 67.6
ClCG01G013750 Citrullus lanatus HOM05D004159 ORTHO05D005858 6.9e-233 810.8 604 67.7
AT5G14520 Arabidopsis thaliana HOM05D004159 ORTHO05D005858 2.0e-232 809.3 595 68.2
CARHR198790 Cardamine hirsuta HOM05D004159 ORTHO05D005858 2.0e-232 809.3 599 68.1
BraA03t10001Z Brassica rapa HOM05D004159 ORTHO05D005858 3.4e-232 808.5 600 67.8
AL6G25270 Arabidopsis lyrata HOM05D004159 ORTHO05D005858 5.8e-232 807.7 566 70.8
Gorai.001G264700 Gossypium raimondii HOM05D004159 ORTHO05D005858 9.9e-232 807.0 600 67.3
Nitab4.5_0003930g0060 Nicotiana tabacum HOM05D004159 ORTHO05D005858 9.9e-232 807.0 599 68.9
Sed0003581 Sechium edule HOM05D004159 ORTHO05D005858 1.3e-231 806.6 604 66.7
THA.LOC104822401 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 1.3e-231 806.6 596 68.1
Gohir.D07G229600 Gossypium hirsutum HOM05D004159 ORTHO05D005858 2.2e-231 805.8 600 67.3
Duzib187G0134 Durio zibethinus HOM05D004159 ORTHO05D005858 2.9e-231 805.4 599 67.4
Gohir.A07G222900 Gossypium hirsutum HOM05D004159 ORTHO05D005858 3.8e-231 805.1 600 67.3
MD17G1027600 Malus domestica HOM05D004159 ORTHO05D005858 3.8e-231 805.1 601 67.1
Prupe.3G291100 Prunus persica HOM05D004159 ORTHO05D005858 1.1e-230 803.5 599 66.4
SGA_v2.0_scaffold32G13248 Striga asiatica HOM05D004159 ORTHO05D005858 6.6e-228 794.3 596 67.1
DCAR_021719 Daucus carota HOM05D004159 ORTHO05D005858 7.3e-227 790.8 596 66.9
MD09G1027600 Malus domestica HOM05D004159 ORTHO05D005858 1.8e-225 786.2 600 66.3
CDE07G0971 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 9.0e-225 783.9 600 65.7
Carub.0006s1270 Capsella rubella HOM05D004159 ORTHO05D005858 3.4e-224 781.9 554 70.4
arahy.Tifrunner.gnm1.ann1.M4LD34 Arachis hypogaea HOM05D004159 ORTHO05D005858 5.8e-224 781.2 606 65.8
HanXRQChr04g0114031 Helianthus annuus HOM05D004159 ORTHO05D005858 1.7e-223 779.6 597 65.5
Os03g0699200 Oryza sativa ssp. japonica HOM05D004159 ORTHO05D005858 3.8e-223 778.5 601 65.1
Phvul.007G070900 Phaseolus vulgaris HOM05D004159 ORTHO05D005858 4.9e-223 778.1 599 65.6
Dinv33444 Davidia involucrata HOM05D004159 ORTHO05D005858 6.4e-223 777.7 538 72.1
CsaV3_1G014060 Cucumis sativus L. HOM05D004159 ORTHO05D005858 2.4e-222 775.8 607 64.9
Glyma.03G234900 Glycine max HOM05D004159 ORTHO05D005858 2.4e-222 775.8 599 65.4
LjContig00272g0012452 Lotus japonicus HOM05D004159 ORTHO05D005858 1.6e-221 773.1 603 64.5
Lj1g0017236 Lotus japonicus HOM05D004159 ORTHO05D005858 2.1e-221 772.7 603 64.3
VMungo0720G1997 Vigna mungo HOM05D004159 ORTHO05D005858 3.5e-221 771.9 600 65.0
SalBow6G0855 Salvia bowleyana HOM05D004159 ORTHO05D005858 1.0e-220 770.4 600 66.0
Lsat_1_v5_gn_2_51000 Lactuca sativa HOM05D004159 ORTHO05D005858 1.3e-220 770.0 610 64.1
Migut.B00156 Erythranthe guttata HOM05D004159 ORTHO05D005858 2.3e-220 769.2 601 65.4
Glyma.19G232500 Glycine max HOM05D004159 ORTHO05D005858 3.0e-220 768.8 599 65.1
Aqoxy5G03802 Aquilegia oxysepala HOM05D004159 ORTHO05D005858 1.5e-219 766.5 600 64.2
Migut.N01406 Erythranthe guttata HOM05D004159 ORTHO05D005858 1.9e-219 766.1 601 65.2
HanXRQChr14g0462651 Helianthus annuus HOM05D004159 ORTHO05D005858 1.9e-219 766.1 600 64.2
MELO3C004873.2 Cucumis melo HOM05D004159 ORTHO05D005858 4.3e-219 765.0 607 63.8
ATR1132G032 Amborella trichopoda HOM05D004159 ORTHO05D005858 7.4e-219 764.2 592 64.5
PSO017G2175 Papaver somniferum HOM05D004159 ORTHO05D005858 7.4e-219 764.2 595 64.5
Aa31LG11G15290 Aethionema arabicum HOM05D004159 ORTHO05D005858 2.1e-218 762.7 608 64.5
Lalb_Chr06g0175751 Lupinus albus HOM05D004159 ORTHO05D005858 3.7e-218 761.9 609 64.5
Zm00001eb053960 Zea mays HOM05D004159 ORTHO05D005858 3.1e-217 758.8 612 62.6
Lalb_Chr02g0160481 Lupinus albus HOM05D004159 ORTHO05D005858 1.5e-216 756.5 607 63.8
ECA240G1354 Erigeron canadensis HOM05D004159 ORTHO05D005858 2.2e-215 752.7 596 63.8
EL10Ac8g19455 Beta vulgaris HOM05D004159 ORTHO05D005858 2.7e-213 745.7 597 62.6
Oeu048622.3 Olea europaea HOM05D004159 ORTHO05D005858 3.5e-213 745.3 581 65.1
Ah.09g231680 Amaranthus hybridus HOM05D004159 ORTHO05D005858 2.1e-210 736.1 606 62.7
TPR.G1071 Trifolium pratense HOM05D004159 ORTHO05D005858 2.1e-210 736.1 599 63.1
AUR62040778 Chenopodium quinoa HOM05D004159 ORTHO05D005858 3.7e-210 735.3 597 62.3
Medtr7g100040 Medicago truncatula HOM05D004159 ORTHO05D005858 4.8e-210 734.9 604 61.9
RcHm_v2.0_Chr5g0047391 Rosa chinensis HOM05D004159 ORTHO05D005858 3.1e-209 732.3 604 62.9
AUR62040779 Chenopodium quinoa HOM05D004159 ORTHO05D005858 1.5e-208 729.9 520 67.5
Psat0s1782g0040 Pisum sativum HOM05D004159 ORTHO05D005858 3.4e-208 728.8 605 62.0
Ca_26485_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 1.7e-207 726.5 596 63.4
Prupe.8G015200 Prunus persica HOM05D004159 ORTHO05D005858 3.8e-207 725.3 595 62.4
Hund22314 Selenicereus undatus HOM05D004159 ORTHO05D005858 8.4e-207 724.2 595 62.0
Prupe.8G015700 Prunus persica HOM05D004159 ORTHO05D005858 2.5e-206 722.6 595 62.2
Sopen07g024120 Solanum pennellii HOM05D004159 ORTHO05D005858 9.3e-206 720.7 520 69.8
FAN25G3844 Fragaria x ananassa HOM05D004159 ORTHO05D005858 2.7e-205 719.2 605 61.8
FvH4_3g26080 Fragaria vesca HOM05D004159 ORTHO05D005858 3.3e-203 712.2 605 61.0
FAN11G1291 Fragaria x ananassa HOM05D004159 ORTHO05D005858 3.3e-203 712.2 605 61.0
CDE06G0546 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 4.3e-203 711.8 615 60.0
PSO764G0137 Papaver somniferum HOM05D004159 ORTHO05D005858 1.3e-202 710.3 599 60.4
FAN16G1867 Fragaria x ananassa HOM05D004159 ORTHO05D005858 2.8e-202 709.1 605 61.2
FAN21G3616 Fragaria x ananassa HOM05D004159 ORTHO05D005858 4.8e-202 708.4 605 61.2
ClCG11G000220 Citrullus lanatus HOM05D004159 ORTHO05D005858 2.5e-198 696.0 600 61.2
unitig_21.g20810 Utricularia gibba HOM05D004159 ORTHO05D005858 3.3e-195 685.6 600 59.7
PSO478G0945 Papaver somniferum HOM05D004159 ORTHO05D005858 1.8e-193 679.9 593 59.9
AUR62029204 Chenopodium quinoa HOM05D004159 ORTHO05D005858 5.3e-193 678.3 597 59.0
SEGI_02382 Sequoiadendron giganteum HOM05D004159 ORTHO05D005858 1.2e-192 677.2 595 58.7
Lsat_1_v5_gn_4_179560 Lactuca sativa HOM05D004159 ORTHO05D005858 4.5e-192 675.2 582 59.3
HPP92_005716 Vanilla planifolia HOM05D004159 ORTHO05D005858 3.8e-191 672.2 602 58.5
Prupe.4G071200 Prunus persica HOM05D004159 ORTHO05D005858 2.2e-186 656.4 594 58.2
Medtr8g010330 Medicago truncatula HOM05D004159 ORTHO05D005858 7.7e-176 621.3 599 55.6
SMO356G0182 Selaginella moellendorffii HOM05D004159 ORTHO05D005858 5.5e-174 615.1 609 54.7
ECA248G2726 Erigeron canadensis HOM05D004159 ORTHO05D005858 8.8e-172 607.8 596 55.9
AagrBONN_evm.TU.Sc2ySwM_362.1908 Anthoceros agrestis HOM05D004159 ORTHO05D005858 2.7e-168 596.3 619 51.7
arahy.Tifrunner.gnm1.ann1.M9AKWN Arachis hypogaea HOM05D004159 ORTHO05D005858 5.5e-166 588.6 462 65.4
Mapoly0138s0023 Marchantia polymorpha HOM05D004159 ORTHO05D005858 1.6e-165 587.0 598 51.0
Pp3c3_23250 Physcomitrium patens HOM05D004159 ORTHO05D005858 5.6e-158 562.0 601 50.9
Nitab4.5_0008375g0010 Nicotiana tabacum HOM05D004159 ORTHO05D005858 6.4e-154 548.5 441 63.3
CBR_g38896 Chara braunii HOM05D004159 ORTHO05D005858 1.8e-140 503.8 605 47.1
Dinv35104 Davidia involucrata HOM05D004159 ORTHO05D005858 8.3e-138 495.0 392 66.6
Cre16.g683793 Chlamydomonas reinhardtii HOM05D004159 ORTHO05D005858 4.7e-125 452.6 632 41.5
Hma1.2p1_2964F.1_g330970 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 1.2e-123 448.0 318 70.1
MCO04G526 Micromonas commoda HOM05D004159 ORTHO05D005858 2.6e-123 446.8 455 50.3
TPR.G27000 Trifolium pratense HOM05D004159 ORTHO05D005858 8.4e-122 441.8 511 48.7
Sc03g0007500 Simmondsia chinensis HOM05D004159 ORTHO05D005858 3.5e-120 436.4 316 66.5
Ca_22754_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 2.9e-114 416.8 356 61.2
PRCOL_00002170 Prasinoderma coloniale HOM05D004159 ORTHO05D005858 2.5e-110 403.7 610 41.3
Hma1.2p1_0999F.1_g246250 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 7.1e-105 385.6 353 57.8
Zm00001eb053940 Zea mays HOM05D004159 ORTHO05D005858 1.1e-86 325.1 267 62.5
Haze_26879 Corylus avellana HOM05D004159 ORTHO05D005858 1.0e-79 302.0 597 35.3
BcaB01g05108 Brassica carinata HOM05D004159 ORTHO05D005858 1.6e-72 278.1 222 62.2
Psat1g081880 Pisum sativum HOM05D004159 ORTHO05D019349 1.0e-71 275.4 198 67.2
RcHm_v2.0_Chr5g0047861 Rosa chinensis HOM05D004159 ORTHO05D036595 3.0e-71 273.9 183 72.7
Cfa027221 Carpinus fangiana HOM05D004159 ORTHO05D006938 2.4e-68 264.2 631 33.9
Hma1.2p1_0999F.1_g246240 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 1.9e-57 228.0 136 74.3
Sc03g0007510 Simmondsia chinensis HOM05D004159 ORTHO05D005858 1.9e-57 228.0 166 65.7
PSO675G5574 Papaver somniferum HOM05D004159 ORTHO05D302046 9.1e-52 209.1 382 38.7
Gohir.D06G181800 Gossypium hirsutum HOM05D004159 ORTHO05D021100 1.3e-42 178.7 122 69.7
MD10G1043900 Malus domestica HOM05D004159 ORTHO05D036595 4.0e-39 167.2 120 65.8
Gohir.D13G037150 Gossypium hirsutum HOM05D004159 ORTHO05D021100 4.4e-38 163.7 115 69.6
Gorai.013G041700 Gossypium raimondii HOM05D004159 ORTHO05D005858 2.2e-37 161.4 115 68.7
Hma1.2p1_0078F.1_g040075 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 1.1e-31 142.5 92 72.8
HanXRQChr05g0138871 Helianthus annuus HOM05D004159 ORTHO05D005858 1.4e-31 142.1 135 56.3
Hma1.2p1_0078F.1_g040060 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 3.1e-31 141.0 92 71.7
Ca_31061_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 5.2e-31 140.2 182 48.4
Aa31sc84G60 Aethionema arabicum HOM05D004159 ORTHO05D007259 8.9e-31 139.4 210 42.4
Actinidia33332 Actinidia chinensis HOM05D004159 ORTHO05D002141 2.9e-29 134.4 80 76.2
RcHm_v2.0_Chr5g0047691 Rosa chinensis HOM05D004159 ORTHO05D036595 1.3e-26 125.6 82 72.0
SEGI_01298 Sequoiadendron giganteum HOM05D004159 ORTHO05D021100 1.7e-26 125.2 78 74.4
Medtr6g022610 Medicago truncatula HOM05D004159 ORTHO05D005858 1.9e-25 121.7 181 46.4
Nitab4.5_0008375g0030 Nicotiana tabacum HOM05D004159 ORTHO05D285123 6.4e-21 106.7 132 48.5
Actinidia35769 Actinidia chinensis HOM05D004159 ORTHO05D021100 4.7e-16 90.5 105 52.4
Lj2g0001382 Lotus japonicus HOM05D004159 ORTHO05D235994 1.1e-15 89.4 56 67.9
MD13G1107200 Malus domestica HOM05D004159 ORTHO05D021100 1.4e-15 89.0 65 60.0
Medtr6g022550 Medicago truncatula HOM05D004159 ORTHO05D005858 3.8e-13 80.9 60 61.7
Medtr6g022570 Medicago truncatula HOM05D004159 ORTHO05D005858 1.3e-10 72.4 51 62.7
Sc03g0007490 Simmondsia chinensis HOM05D004159 ORTHO05D388831 2.8e-08 64.7 96 49.0
VMungo0464G0208 Vigna mungo HOM05D005746 ORTHO05D007105 4.7e-08 63.9 34 85.3
Gohir.D10G229800 Gossypium hirsutum HOM05D000561 ORTHO05D000514 2.4e-07 61.6 38 78.9
Zm00001eb053920 Zea mays HOM05D004159 ORTHO05D021100 9.9e-06 56.2 39 64.1


User provided reference genes

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