Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G113600 Populus trichocarpa HOM05D004464 ORTHO05D005135 6.7e-99 364.0 183 100.0
Sabra17G0087000 Salix brachista HOM05D004464 ORTHO05D005135 5.9e-95 350.9 183 94.5
Potri.017G101200 Populus trichocarpa HOM05D004464 ORTHO05D005135 7.7e-95 350.5 183 95.1
Sabra10G0012000 Salix brachista HOM05D004464 ORTHO05D005135 7.2e-93 344.0 190 91.1
Manes.01G100100 Manihot esculenta HOM05D004464 ORTHO05D005135 1.5e-90 336.3 183 90.7
Eucgr.J01412 Eucalyptus grandis HOM05D004464 ORTHO05D005135 5.4e-88 327.8 182 88.5
Dinv33871 Davidia involucrata HOM05D004464 ORTHO05D005135 9.1e-88 327.0 183 87.4
Actinidia26272 Actinidia chinensis HOM05D004464 ORTHO05D005135 1.6e-87 326.2 183 88.0
GSVIVG01036537001 Vitis vinifera HOM05D004464 ORTHO05D005135 1.6e-87 326.2 183 85.8
Ciclev10012892m.g Citrus clementina HOM05D004464 ORTHO05D005135 2.7e-87 325.5 183 85.8
Duzib150G0689 Durio zibethinus HOM05D004464 ORTHO05D005135 2.7e-87 325.5 183 86.9
PGR042G1328 Punica granatum HOM05D004464 ORTHO05D005135 2.7e-87 325.5 183 86.3
Nn4g23543 Nelumbo nucifera HOM05D004464 ORTHO05D005135 3.5e-87 325.1 183 85.8
Dinv34904 Davidia involucrata HOM05D004464 ORTHO05D005135 4.5e-87 324.7 183 87.4
TAR371G0146 Trochodendron aralioides HOM05D004464 ORTHO05D005135 4.5e-87 324.7 183 84.7
Actinidia17608 Actinidia chinensis HOM05D004464 ORTHO05D005135 5.9e-87 324.3 183 87.4
HanXRQChr15g0490131 Helianthus annuus HOM05D004464 ORTHO05D005135 5.9e-87 324.3 181 85.6
Gohir.D05G003500 Gossypium hirsutum HOM05D004464 ORTHO05D005135 1.0e-86 323.6 183 85.2
Gorai.009G003100 Gossypium raimondii HOM05D004464 ORTHO05D005135 1.0e-86 323.6 183 85.2
Gohir.A05G003100 Gossypium hirsutum HOM05D004464 ORTHO05D005135 2.3e-86 322.4 183 85.2
Hma1.2p1_1837F.1_g304810 Hydrangea macrophylla HOM05D004464 ORTHO05D005135 3.8e-86 321.6 183 86.3
Thecc.01G298100 Theobroma cacao HOM05D004464 ORTHO05D005135 5.0e-86 321.2 183 85.2
Atru.chr12.814 Acer truncatum HOM05D004464 ORTHO05D005135 1.1e-85 320.1 183 83.6
CDE10G0456 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 1.5e-85 319.7 183 84.7
Prupe.3G248300 Prunus persica HOM05D004464 ORTHO05D005135 1.5e-85 319.7 183 84.2
Migut.K00882 Erythranthe guttata HOM05D004464 ORTHO05D005135 7.2e-85 317.4 181 85.1
MBI15_g04989_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 1.2e-84 316.6 183 83.1
MBI15_g11301_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 1.2e-84 316.6 183 83.1
CSS0016516 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 1.6e-84 316.2 183 83.1
SGA_v2.0_scaffold148G36455 Striga asiatica HOM05D004464 ORTHO05D005135 1.6e-84 316.2 183 84.7
CSS0037173 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 2.1e-84 315.8 183 82.5
MSTRG.15432 Avicennia marina HOM05D004464 ORTHO05D005135 3.6e-84 315.1 183 84.7
Peaxi162Scf01039g00131 Petunia axillaris HOM05D004464 ORTHO05D005135 4.7e-84 314.7 183 83.6
CDE10G0562 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 8.0e-84 313.9 183 83.6
TWI36G0525 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 1.0e-83 313.5 183 82.5
TWI36G0787 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 1.0e-83 313.5 183 82.5
COL.COLO4_21291 Corchorus olitorius HOM05D004464 ORTHO05D005135 1.4e-83 313.2 183 83.1
MD09G1075700 Malus domestica HOM05D004464 ORTHO05D005135 1.8e-83 312.8 183 81.4
TWI75G1858 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 3.0e-83 312.0 183 82.5
Glyma.10G232700 Glycine max HOM05D004464 ORTHO05D005135 4.0e-83 311.6 183 82.0
Glyma.20G161600 Glycine max HOM05D004464 ORTHO05D005135 4.0e-83 311.6 183 82.0
Nitab4.5_0001339g0030 Nicotiana tabacum HOM05D004464 ORTHO05D005135 4.0e-83 311.6 183 82.0
Cc07_g04530 Coffea canephora HOM05D004464 ORTHO05D005135 5.2e-83 311.2 183 83.6
MD17G1066400 Malus domestica HOM05D004464 ORTHO05D005135 5.2e-83 311.2 183 80.3
Sopen02g034060 Solanum pennellii HOM05D004464 ORTHO05D005135 1.2e-82 310.1 183 81.4
SalBow1G0807 Salvia bowleyana HOM05D004464 ORTHO05D005135 1.5e-82 309.7 183 82.5
Sc07g0002150 Simmondsia chinensis HOM05D004464 ORTHO05D005135 2.0e-82 309.3 181 81.8
DCAR_016093 Daucus carota HOM05D004464 ORTHO05D005135 2.6e-82 308.9 183 83.1
PGSC0003DMG400001469 Solanum tuberosum HOM05D004464 ORTHO05D005135 2.6e-82 308.9 183 80.9
Phvul.007G072900 Phaseolus vulgaris HOM05D004464 ORTHO05D005135 3.4e-82 308.5 183 81.4
Solyc02g089280.3 Solanum lycopersicum HOM05D004464 ORTHO05D005135 3.4e-82 308.5 183 80.9
CANSAT11G0238 Cannabis sativa HOM05D004464 ORTHO05D005135 4.4e-82 308.1 183 78.7
ATR0743G033 Amborella trichopoda HOM05D004464 ORTHO05D005135 9.8e-82 307.0 183 80.3
Hund16239 Selenicereus undatus HOM05D004464 ORTHO05D005135 9.8e-82 307.0 183 80.3
Lj3g0020854 Lotus japonicus HOM05D004464 ORTHO05D005135 2.2e-81 305.8 183 81.4
Lj4g0017621 Lotus japonicus HOM05D004464 ORTHO05D005135 2.2e-81 305.8 183 81.4
EL10Ac2g04433 Beta vulgaris HOM05D004464 ORTHO05D005135 2.8e-81 305.4 183 80.3
CANSAT64G2552 Cannabis sativa HOM05D004464 ORTHO05D005135 3.7e-81 305.1 183 77.6
ClCG07G016070 Citrullus lanatus HOM05D004464 ORTHO05D005135 4.9e-81 304.7 182 80.8
SGA_v2.0_scaffold163G37992 Striga asiatica HOM05D004464 ORTHO05D005135 6.3e-81 304.3 183 81.4
THA.LOC104820981 Tarenaya hassleriana HOM05D004464 ORTHO05D005135 6.3e-81 304.3 181 80.1
unitig_0.g1789 Utricularia gibba HOM05D004464 ORTHO05D005135 6.3e-81 304.3 182 80.8
Ah.16g101000 Amaranthus hybridus HOM05D004464 ORTHO05D005135 3.1e-80 302.0 183 80.3
CsaV3_4G010040 Cucumis sativus L. HOM05D004464 ORTHO05D005135 3.1e-80 302.0 182 79.7
TPR.G23462 Trifolium pratense HOM05D004464 ORTHO05D005135 4.1e-80 301.6 183 78.1
AL6G26590 Arabidopsis lyrata HOM05D004464 ORTHO05D005135 5.4e-80 301.2 179 79.9
AT5G15750 Arabidopsis thaliana HOM05D004464 ORTHO05D005135 5.4e-80 301.2 181 78.5
FvH4_6g46310 Fragaria vesca HOM05D004464 ORTHO05D005135 5.4e-80 301.2 183 79.2
FAN02G0274 Fragaria x ananassa HOM05D004464 ORTHO05D005135 5.4e-80 301.2 183 79.2
FAN14G2017 Fragaria x ananassa HOM05D004464 ORTHO05D005135 5.4e-80 301.2 183 79.2
VMungo0720G0545 Vigna mungo HOM05D004464 ORTHO05D005135 7.0e-80 300.8 183 80.3
Sed0009719 Sechium edule HOM05D004464 ORTHO05D005135 9.2e-80 300.4 182 79.1
Aa31LG11G13830 Aethionema arabicum HOM05D004464 ORTHO05D005135 1.2e-79 300.1 179 80.4
arahy.Tifrunner.gnm1.ann1.6V5APJ Arachis hypogaea HOM05D004464 ORTHO05D005135 1.2e-79 300.1 183 78.1
arahy.Tifrunner.gnm1.ann1.AQQ1ZC Arachis hypogaea HOM05D004464 ORTHO05D005135 1.2e-79 300.1 183 78.1
TPR.G29907 Trifolium pratense HOM05D004464 ORTHO05D005135 1.2e-79 300.1 183 77.6
Aa31LG2G910 Aethionema arabicum HOM05D004464 ORTHO05D005135 2.0e-79 299.3 179 79.9
FAN05G3637 Fragaria x ananassa HOM05D004464 ORTHO05D005135 2.0e-79 299.3 183 78.7
Psat7g017000 Pisum sativum HOM05D004464 ORTHO05D005135 4.5e-79 298.1 183 78.7
FAN09G0031 Fragaria x ananassa HOM05D004464 ORTHO05D005135 7.8e-79 297.4 183 78.1
RcHm_v2.0_Chr2g0164761 Rosa chinensis HOM05D004464 ORTHO05D005135 7.8e-79 297.4 183 78.1
Ah.10g038200 Amaranthus hybridus HOM05D004464 ORTHO05D005135 1.3e-78 296.6 183 78.7
Lalb_Chr16g0389591 Lupinus albus HOM05D004464 ORTHO05D005135 1.3e-78 296.6 183 77.6
Medtr8g102530 Medicago truncatula HOM05D004464 ORTHO05D005135 1.7e-78 296.2 183 76.0
BraA03t10058Z Brassica rapa HOM05D004464 ORTHO05D005135 2.9e-78 295.4 181 77.3
CAN.G497.54 Capsicum annuum HOM05D004464 ORTHO05D005135 2.9e-78 295.4 183 77.6
Sp6g28370 Schrenkiella parvula HOM05D004464 ORTHO05D005135 2.9e-78 295.4 179 78.2
BcaB01g05028 Brassica carinata HOM05D004464 ORTHO05D005135 3.8e-78 295.0 181 76.8
CiPaw.15G080600 Carya illinoinensis HOM05D004464 ORTHO05D005135 3.8e-78 295.0 184 75.5
C03p08530 Brassica napus HOM05D004464 ORTHO05D005135 5.0e-78 294.7 181 76.2
Aqoxy3G02935 Aquilegia oxysepala HOM05D004464 ORTHO05D005135 6.6e-78 294.3 183 77.6
BcaNung02202 Brassica carinata HOM05D004464 ORTHO05D005135 8.6e-78 293.9 181 76.8
AUR62023152 Chenopodium quinoa HOM05D004464 ORTHO05D005135 8.6e-78 293.9 183 78.1
A03p07340 Brassica napus HOM05D004464 ORTHO05D005135 1.1e-77 293.5 181 76.2
A02p03200 Brassica napus HOM05D004464 ORTHO05D005135 2.5e-77 292.4 181 77.3
BraA02t05291Z Brassica rapa HOM05D004464 ORTHO05D005135 2.5e-77 292.4 181 77.3
CiPaw.06G059900 Carya illinoinensis HOM05D004464 ORTHO05D005135 2.5e-77 292.4 184 75.0
AUR62009474 Chenopodium quinoa HOM05D004464 ORTHO05D005135 2.5e-77 292.4 183 77.6
BcaC03g18447 Brassica carinata HOM05D004464 ORTHO05D005135 3.3e-77 292.0 181 77.3
C02p07950 Brassica napus HOM05D004464 ORTHO05D005135 3.3e-77 292.0 181 77.3
BolC2t06718H Brassica oleracea HOM05D004464 ORTHO05D005135 3.3e-77 292.0 181 77.3
PSO782G4050 Papaver somniferum HOM05D004464 ORTHO05D005135 4.3e-77 291.6 183 78.7
Carub.0004s0609 Capsella rubella HOM05D004464 ORTHO05D005135 5.6e-77 291.2 179 77.7
QL09p044371 Quercus lobata HOM05D004464 ORTHO05D005135 9.5e-77 290.4 184 76.1
CARHR197580 Cardamine hirsuta HOM05D004464 ORTHO05D005135 1.2e-76 290.0 179 76.5
PSO198G0095 Papaver somniferum HOM05D004464 ORTHO05D005135 2.1e-76 289.3 183 78.1
Carub.0006s1390 Capsella rubella HOM05D004464 ORTHO05D005135 3.6e-76 288.5 179 77.1
vmacro18124 Vaccinium macrocarpon HOM05D004464 ORTHO05D005135 4.7e-76 288.1 182 78.0
Cfa007699 Carpinus fangiana HOM05D004464 ORTHO05D005135 1.0e-75 287.0 184 74.5
Oeu033412.2 Olea europaea HOM05D004464 ORTHO05D005135 5.2e-75 284.6 228 65.4
Mapoly0007s0196 Marchantia polymorpha HOM05D004464 ORTHO05D005135 1.5e-74 283.1 183 72.7
PSO017G3712 Papaver somniferum HOM05D004464 ORTHO05D005135 2.0e-74 282.7 183 74.9
QL02p065152 Quercus lobata HOM05D004464 ORTHO05D005135 2.0e-74 282.7 184 73.4
MCO12G368 Micromonas commoda HOM05D004464 ORTHO05D005135 4.4e-74 281.6 182 73.1
DCAR_010215 Daucus carota HOM05D004464 ORTHO05D005135 6.4e-73 277.7 219 67.1
SMO089G0012 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 8.3e-73 277.3 183 69.9
ECA285G0012 Erigeron canadensis HOM05D004464 ORTHO05D005135 2.4e-72 275.8 185 71.4
Nitab4.5_0009887g0020 Nicotiana tabacum HOM05D004464 ORTHO05D005135 1.3e-70 270.0 152 83.6
SHI12226 Sapria himalayana HOM05D004464 ORTHO05D005135 1.3e-70 270.0 184 68.5
Pp3c13_7750 Physcomitrium patens HOM05D004464 ORTHO05D005135 1.1e-69 266.9 183 66.7
Ca_17363_v3 Cicer arietinum L. HOM05D002451 ORTHO05D007901 6.2e-68 261.2 155 77.4
Atru.chr5.3325 Acer truncatum HOM05D004464 ORTHO05D005135 1.1e-67 260.4 183 74.3
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 3.1e-67 258.8 155 80.0
Duzib170G0747 Durio zibethinus HOM05D004464 ORTHO05D005135 4.0e-67 258.5 183 71.6
Cre03.g170750 Chlamydomonas reinhardtii HOM05D004464 ORTHO05D005135 5.8e-66 254.6 181 67.4
Glyma.16G058000 Glycine max HOM05D004464 ORTHO05D005135 1.9e-64 249.6 152 79.6
Lsat_1_v5_gn_3_96881 Lactuca sativa HOM05D004464 ORTHO05D005135 6.6e-62 241.1 181 68.0
Zm00001eb280020 Zea mays HOM05D004464 ORTHO05D005135 1.9e-61 239.6 181 65.2
Thhalv10014794m.g Eutrema salsugineum HOM05D004464 ORTHO05D005135 5.6e-61 238.0 136 81.6
Haze_14377 Corylus avellana HOM05D004464 ORTHO05D005135 2.1e-60 236.1 188 65.4
PSO478G4867 Papaver somniferum HOM05D004464 ORTHO05D005135 8.3e-57 224.2 183 63.4
SEGI_12415 Sequoiadendron giganteum HOM05D004464 ORTHO05D005135 8.3e-57 224.2 138 76.8
Nn3g17540 Nelumbo nucifera HOM05D004464 ORTHO05D005135 3.9e-54 215.3 183 62.3
SMO302G0020 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 6.6e-54 214.5 174 61.5
HPP92_025702 Vanilla planifolia HOM05D004464 ORTHO05D005135 1.5e-53 213.4 155 67.7
Gorai.007G357000 Gossypium raimondii HOM05D004464 ORTHO05D005135 4.4e-50 201.8 179 62.0
AagrBONN_evm.TU.Sc2ySwM_362.1773 Anthoceros agrestis HOM05D004464 ORTHO05D005135 5.4e-48 194.9 152 62.5
BcaNung00660 Brassica carinata HOM05D004464 ORTHO05D005135 9.2e-48 194.1 158 58.9
Cpa.g.sc14.239 Carica papaya HOM05D004464 ORTHO05D005135 8.7e-46 187.6 102 88.2
Rhsim08G0077600 Rhododendron simsii HOM05D004464 ORTHO05D005135 1.1e-45 187.2 102 87.3
MELO3C000036.2 Cucumis melo HOM05D004464 ORTHO05D005135 1.9e-45 186.4 102 85.3
Lju361C7T5 Lonicera japonica HOM05D004464 ORTHO05D005135 7.3e-45 184.5 100 89.0
Cfa025099 Carpinus fangiana HOM05D002539 ORTHO05D005135 1.1e-43 180.6 186 48.9
Gorai.007G356600 Gossypium raimondii HOM05D004464 ORTHO05D005135 2.4e-43 179.5 100 87.0
Gorai.007G357200 Gossypium raimondii HOM05D004464 ORTHO05D005135 4.0e-43 178.7 99 85.9
CBR_g26031 Chara braunii HOM05D004464 ORTHO05D005135 1.5e-42 176.8 146 58.9
BcaNung00661 Brassica carinata HOM05D004464 ORTHO05D005135 2.2e-41 172.9 158 54.4
BolC3t13358H Brassica oleracea HOM05D004464 ORTHO05D005135 7.1e-40 167.9 106 74.5
AagrBONN_evm.TU.Sc2ySwM_344.90 Anthoceros agrestis HOM05D004464 ORTHO05D005135 7.3e-37 157.9 134 59.7
ECA246G0747 Erigeron canadensis HOM05D004464 ORTHO05D005135 2.9e-33 146.0 105 65.7
BolC1t00394H Brassica oleracea HOM05D004464 ORTHO05D005135 1.6e-31 140.2 99 65.7
Lju361A7T16 Lonicera japonica HOM05D004464 ORTHO05D005135 6.0e-31 138.3 81 82.7
Oeu003765.1 Olea europaea HOM05D007961 ORTHO05D005135 1.6e-28 130.2 78 79.5
AagrBONN_evm.TU.Sc2ySwM_368.3154 Anthoceros agrestis HOM05D004464 ORTHO05D005135 4.5e-26 122.1 101 60.4
SHI12394 Sapria himalayana HOM05D004464 ORTHO05D005135 5.8e-26 121.7 106 58.5
MELO3C001556.2 Cucumis melo HOM05D004464 ORTHO05D005135 1.7e-25 120.2 81 72.8
SHI40216 Sapria himalayana HOM05D004464 ORTHO05D005135 9.0e-19 97.8 73 61.6
MELO3C000032.2 Cucumis melo HOM05D004464 ORTHO05D005135 3.4e-18 95.9 52 88.5
Thecc.01G298200 Theobroma cacao HOM05D004464 ORTHO05D005135 7.1e-16 88.2 106 50.0
C09p61360 Brassica napus HOM05D004464 ORTHO05D005135 3.5e-15 85.9 127 44.1
Os04g0662100 Oryza sativa ssp. japonica HOM05D004464 ORTHO05D005135 1.4e-08 63.9 37 73.0
BcaC04g18941 Brassica carinata HOM05D004464 ORTHO05D005135 3.9e-06 55.8 121 33.1
BolC9t58977H Brassica oleracea HOM05D004464 ORTHO05D005135 3.9e-06 55.8 81 39.5


User provided reference genes

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