Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G055600 Populus trichocarpa HOM05D005873 ORTHO05D007582 0.0e+00 1459.1 716 100.0
Sabra04G0036300 Salix brachista HOM05D005873 ORTHO05D007582 0.0e+00 1390.6 716 95.4
Prupe.4G060100 Prunus persica HOM05D005873 ORTHO05D007582 0.0e+00 1135.2 714 78.3
GSVIVG01021202001 Vitis vinifera HOM05D005873 ORTHO05D007582 0.0e+00 1132.5 713 78.5
COL.COLO4_05490 Corchorus olitorius HOM05D005873 ORTHO05D007582 0.0e+00 1132.1 710 76.5
Ciclev10014429m.g Citrus clementina HOM05D005873 ORTHO05D007582 0.0e+00 1125.5 724 77.3
Duzib192G0329 Durio zibethinus HOM05D005873 ORTHO05D007582 0.0e+00 1123.6 710 77.6
Gorai.009G163500 Gossypium raimondii HOM05D005873 ORTHO05D007582 0.0e+00 1121.3 710 77.0
Gohir.D05G158500 Gossypium hirsutum HOM05D005873 ORTHO05D007582 0.0e+00 1116.7 710 76.9
Thecc.06G172000 Theobroma cacao HOM05D005873 ORTHO05D007582 0.0e+00 1115.9 710 76.2
Gohir.A05G155800 Gossypium hirsutum HOM05D005873 ORTHO05D007582 0.0e+00 1111.3 710 76.3
FAN21G0636 Fragaria x ananassa HOM05D005873 ORTHO05D007582 0.0e+00 1110.5 713 77.1
TWI38G0673 Tripterygium wilfordii HOM05D005873 ORTHO05D007582 0.0e+00 1109.7 712 77.0
CiPaw.10G058200 Carya illinoinensis HOM05D005873 ORTHO05D007582 0.0e+00 1109.4 713 76.4
RcHm_v2.0_Chr5g0010641 Rosa chinensis HOM05D005873 ORTHO05D007582 0.0e+00 1107.0 713 76.3
FAN11G2228 Fragaria x ananassa HOM05D005873 ORTHO05D007582 0.0e+00 1105.9 713 76.9
FvH4_3g07910 Fragaria vesca HOM05D005873 ORTHO05D007582 0.0e+00 1105.5 713 76.7
Dinv04615 Davidia involucrata HOM05D005873 ORTHO05D007582 0.0e+00 1103.6 713 75.7
TWI63G0032 Tripterygium wilfordii HOM05D005873 ORTHO05D007582 0.0e+00 1099.0 712 76.1
FAN16G2124 Fragaria x ananassa HOM05D005873 ORTHO05D007582 0.0e+00 1096.6 713 76.0
Cfa000601 Carpinus fangiana HOM05D005873 ORTHO05D007582 0.0e+00 1096.3 699 76.8
CANSAT35G0525 Cannabis sativa HOM05D005873 ORTHO05D007582 0.0e+00 1095.9 708 75.6
MD10G1281000 Malus domestica HOM05D005873 ORTHO05D007582 0.0e+00 1094.0 713 75.9
MD05G1302300 Malus domestica HOM05D005873 ORTHO05D007582 0.0e+00 1092.4 715 75.4
CSS0049485 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 0.0e+00 1092.0 709 75.2
TAR627G0247 Trochodendron aralioides HOM05D005873 ORTHO05D007582 0.0e+00 1091.6 705 76.0
CSS0045323 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 0.0e+00 1082.8 709 75.2
arahy.Tifrunner.gnm1.ann1.IZWY79 Arachis hypogaea HOM05D005873 ORTHO05D007582 4.9e-312 1074.7 706 75.1
Lj3g0011702 Lotus japonicus HOM05D005873 ORTHO05D007582 1.7e-307 1058.9 712 74.0
Ca_21328_v3 Cicer arietinum L. HOM05D005873 ORTHO05D007582 2.2e-307 1058.5 705 73.9
Medtr0003s0540 Medicago truncatula HOM05D005873 ORTHO05D007582 2.2e-307 1058.5 701 73.5
Lalb_Chr03g0024111 Lupinus albus HOM05D005873 ORTHO05D007582 1.9e-306 1055.4 707 73.3
Nn1g04384 Nelumbo nucifera HOM05D005873 ORTHO05D007582 2.5e-306 1055.0 724 72.2
TPR.G8345 Trifolium pratense HOM05D005873 ORTHO05D007582 2.5e-306 1055.0 712 72.8
Sed0012124 Sechium edule HOM05D005873 ORTHO05D007582 3.2e-306 1054.7 706 72.1
QL05p046535 Quercus lobata HOM05D005873 ORTHO05D007582 9.4e-306 1053.1 796 67.6
Aqoxy4G00415 Aquilegia oxysepala HOM05D005873 ORTHO05D007582 1.2e-305 1052.7 718 73.3
Nn1g09089 Nelumbo nucifera HOM05D005873 ORTHO05D007582 2.7e-305 1051.6 711 72.3
arahy.Tifrunner.gnm1.ann1.6H0VZY Arachis hypogaea HOM05D005873 ORTHO05D007582 4.0e-304 1047.7 707 73.8
ClCG01G023710 Citrullus lanatus HOM05D005873 ORTHO05D007582 1.7e-302 1042.3 702 72.2
MELO3C007214.2 Cucumis melo HOM05D005873 ORTHO05D007582 8.3e-302 1040.0 740 69.6
Glyma.12G010000 Glycine max HOM05D005873 ORTHO05D007582 1.1e-301 1039.6 699 73.0
Peaxi162Scf00010g03612 Petunia axillaris HOM05D005873 ORTHO05D007582 4.1e-301 1037.7 708 71.2
Eucgr.B01514 Eucalyptus grandis HOM05D005873 ORTHO05D007582 9.1e-301 1036.6 714 70.3
VMungo1127G0781 Vigna mungo HOM05D005873 ORTHO05D007582 9.1e-301 1036.6 706 72.4
PGR004G0809 Punica granatum HOM05D005873 ORTHO05D007582 1.7e-299 1032.3 702 71.8
ECA236G1606 Erigeron canadensis HOM05D005873 ORTHO05D007582 2.9e-299 1031.6 724 71.0
Solyc11g068930.3 Solanum lycopersicum HOM05D005873 ORTHO05D007582 3.8e-299 1031.2 714 70.3
FAN25G0256 Fragaria x ananassa HOM05D005873 ORTHO05D007582 2.5e-298 1028.5 734 71.4
Phvul.011G010700 Phaseolus vulgaris HOM05D005873 ORTHO05D007582 2.5e-298 1028.5 707 72.0
PGSC0003DMG400019634 Solanum tuberosum HOM05D005873 ORTHO05D007582 2.5e-298 1028.5 713 71.1
CsaV3_6G050860 Cucumis sativus L. HOM05D005873 ORTHO05D007582 2.3e-296 1021.9 702 70.5
Lj1C1193T7 Lonicera japonica HOM05D005873 ORTHO05D007582 2.3e-296 1021.9 712 71.2
Oeu039925.1 Olea europaea HOM05D005873 ORTHO05D007582 2.3e-296 1021.9 706 71.5
Lsat_1_v5_gn_7_23000 Lactuca sativa HOM05D005873 ORTHO05D007582 1.5e-295 1019.2 718 71.0
Sopen11g027640 Solanum pennellii HOM05D005873 ORTHO05D007582 4.4e-295 1017.7 714 69.6
CAN.G689.28 Capsicum annuum HOM05D005873 ORTHO05D007582 1.7e-294 1015.8 712 69.8
Thhalv10000804m.g Eutrema salsugineum HOM05D005873 ORTHO05D007582 4.9e-294 1014.2 689 71.3
A02p29440 Brassica napus HOM05D005873 ORTHO05D007582 4.1e-293 1011.1 708 70.8
DCAR_028009 Daucus carota HOM05D005873 ORTHO05D007582 5.4e-293 1010.7 710 70.3
BraA02t07971Z Brassica rapa HOM05D005873 ORTHO05D007582 9.2e-293 1010.0 708 70.6
Aa31LG9G7130 Aethionema arabicum HOM05D005873 ORTHO05D007582 2.7e-292 1008.4 703 70.6
THA.LOC104806153 Tarenaya hassleriana HOM05D005873 ORTHO05D007582 2.7e-292 1008.4 705 70.4
SalBow8G4573 Salvia bowleyana HOM05D005873 ORTHO05D007582 7.8e-292 1006.9 712 69.5
Migut.M01045 Erythranthe guttata HOM05D005873 ORTHO05D007582 1.3e-291 1006.1 711 69.9
C02p46710 Brassica napus HOM05D005873 ORTHO05D007582 1.1e-290 1003.0 708 70.2
CARHR176060 Cardamine hirsuta HOM05D005873 ORTHO05D007582 1.9e-290 1002.3 704 69.9
Rhsim13G0191000 Rhododendron simsii HOM05D005873 ORTHO05D007582 1.9e-290 1002.3 727 68.1
Sp2g10820 Schrenkiella parvula HOM05D005873 ORTHO05D007582 1.0e-288 996.5 714 69.5
PSO541G6035 Papaver somniferum HOM05D005873 ORTHO05D007582 1.4e-288 996.1 714 69.9
AL8G12650 Arabidopsis lyrata HOM05D005873 ORTHO05D007582 2.3e-288 995.3 700 69.6
BolC2t10723H Brassica oleracea HOM05D005873 ORTHO05D007582 3.1e-288 995.0 704 70.5
MSTRG.16147 Avicennia marina HOM05D005873 ORTHO05D007582 6.8e-288 993.8 707 69.2
Nitab4.5_0003937g0030 Nicotiana tabacum HOM05D005873 ORTHO05D007582 9.8e-287 989.9 734 67.4
AT5G45900 Arabidopsis thaliana HOM05D005873 ORTHO05D007582 6.4e-286 987.3 700 69.1
PSO675G7532 Papaver somniferum HOM05D005873 ORTHO05D007582 1.1e-285 986.5 714 69.0
BcaC03g16799 Brassica carinata HOM05D005873 ORTHO05D007582 1.2e-284 983.0 704 70.0
HanXRQChr13g0397371 Helianthus annuus HOM05D005873 ORTHO05D007582 3.0e-283 978.4 713 68.6
HanXRQChr05g0156521 Helianthus annuus HOM05D005873 ORTHO05D007582 1.1e-282 976.5 708 69.4
AUR62036593 Chenopodium quinoa HOM05D005873 ORTHO05D007582 6.2e-281 970.7 687 68.3
MBI06_g25992_MAGBIO Magnolia biondii HOM05D005873 ORTHO05D007582 2.6e-279 965.3 707 68.7
Nitab4.5_0000158g0030 Nicotiana tabacum HOM05D005873 ORTHO05D007582 4.4e-279 964.5 670 70.3
EL10Ac8g20512 Beta vulgaris HOM05D005873 ORTHO05D007582 7.8e-276 953.7 793 62.3
ATR0733G019 Amborella trichopoda HOM05D005873 ORTHO05D007582 5.2e-272 941.0 694 66.0
Hund21181 Selenicereus undatus HOM05D005873 ORTHO05D007582 7.1e-269 930.6 761 62.8
Psat7g197320 Pisum sativum HOM05D005873 ORTHO05D007582 1.6e-268 929.5 708 66.9
Ah.14g087180 Amaranthus hybridus HOM05D005873 ORTHO05D007582 1.7e-267 926.0 708 65.1
Atru.chr10.1680 Acer truncatum HOM05D005873 ORTHO05D007582 8.6e-267 923.7 593 76.9
Cc11_g13830 Coffea canephora HOM05D005873 ORTHO05D007582 7.6e-263 910.6 713 63.7
AUR62031177 Chenopodium quinoa HOM05D005873 ORTHO05D007582 1.6e-260 902.9 714 64.6
Carub.0008s0205 Capsella rubella HOM05D005873 ORTHO05D007582 1.0e-259 900.2 668 65.4
Sc17g0005780 Simmondsia chinensis HOM05D005873 ORTHO05D007582 1.3e-257 893.3 596 73.2
Dinv40666 Davidia involucrata HOM05D005873 ORTHO05D007582 3.5e-252 875.2 555 75.1
SEGI_08778 Sequoiadendron giganteum HOM05D005873 ORTHO05D007582 1.6e-249 866.3 715 59.9
Manes.17G054900 Manihot esculenta HOM05D005873 ORTHO05D007582 2.8e-249 865.5 549 78.0
vmacro01547 Vaccinium macrocarpon HOM05D005873 ORTHO05D007582 6.0e-244 847.8 716 61.7
SGA_v2.0_scaffold1G00037 Striga asiatica HOM05D005873 ORTHO05D007582 1.3e-243 846.7 707 61.7
Cpa.g.sc7.54 Carica papaya HOM05D005873 ORTHO05D007582 2.7e-220 769.2 526 74.0
AagrBONN_evm.TU.Sc2ySwM_117.2340 Anthoceros agrestis HOM05D005873 ORTHO05D007582 6.9e-216 754.6 688 54.7
Pp3c24_8100 Physcomitrium patens HOM05D005873 ORTHO05D007582 1.6e-207 726.9 704 53.4
CSS0029481 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 2.4e-200 703.0 746 54.0
SMO367G0884 Selaginella moellendorffii HOM05D005873 ORTHO05D007582 2.1e-188 663.3 694 49.6
CBR_g39927 Chara braunii HOM05D005873 ORTHO05D007582 7.0e-184 648.3 883 43.1
Eucgr.B01507 Eucalyptus grandis HOM05D005873 ORTHO05D007582 3.9e-174 615.9 440 68.2
CBR_g50802 Chara braunii HOM05D005873 ORTHO05D007582 9.5e-173 611.3 846 43.1
Os01g0614900 Oryza sativa ssp. japonica HOM05D005873 ORTHO05D007582 1.5e-170 604.0 693 47.2
Haze_06243 Corylus avellana HOM05D005873 ORTHO05D007582 1.9e-168 597.0 387 73.1
Mapoly0015s0071 Marchantia polymorpha HOM05D005873 ORTHO05D007582 8.3e-161 571.6 493 57.2
MCO13G516 Micromonas commoda HOM05D005873 ORTHO05D007582 3.6e-148 529.6 751 42.6
PRCOL_00005698 Prasinoderma coloniale HOM05D005873 ORTHO05D007582 2.4e-144 516.9 753 40.9
Haze_26854 Corylus avellana HOM05D005873 ORTHO05D007582 7.4e-133 478.8 719 38.7
Cfa025052 Carpinus fangiana HOM05D005873 ORTHO05D007582 2.3e-126 457.2 739 38.2
Cre03.g165215 Chlamydomonas reinhardtii HOM05D005873 ORTHO05D007582 5.1e-126 456.1 812 35.7
Actinidia16800 Actinidia chinensis HOM05D005873 ORTHO05D007582 6.5e-113 412.5 337 66.8
CDE08G0418 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 5.7e-109 399.4 302 67.5
Zm00001eb358160 Zea mays HOM05D005873 ORTHO05D007582 2.8e-108 397.1 359 57.4
SHI28554 Sapria himalayana HOM05D005873 ORTHO05D007582 1.9e-80 304.7 270 58.5
CDE08G0836 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 1.6e-74 285.0 201 67.2
unitig_0.g713 Utricularia gibba HOM05D005873 ORTHO05D007582 3.8e-65 253.8 192 66.7
CDE02G2814 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 1.3e-60 238.8 164 67.7
TPR.G23454 Trifolium pratense HOM05D001972 ORTHO05D002555 3.1e-54 217.6 132 78.8
Potri.011G065402 Populus trichocarpa HOM05D005873 ORTHO05D007582 5.1e-41 173.7 100 87.0
Haze_06244 Corylus avellana HOM05D005873 ORTHO05D007582 9.5e-40 169.5 114 73.7
SHI28555 Sapria himalayana HOM05D005873 ORTHO05D007582 1.1e-38 166.0 102 75.5
SHI28562 Sapria himalayana HOM05D005873 ORTHO05D007582 2.6e-37 161.4 113 64.6
Psat0s133g0080 Pisum sativum HOM05D005873 ORTHO05D007582 1.3e-33 149.1 111 70.3
SHI28558 Sapria himalayana HOM05D005873 ORTHO05D050808 2.0e-29 135.2 83 71.1
Sabra11G0047200 Salix brachista HOM05D005873 ORTHO05D007582 5.4e-27 127.1 61 96.7
Lsat_1_v5_gn_1_96960 Lactuca sativa HOM05D001670 ORTHO05D002980 3.8e-20 104.4 149 43.6
Lsat_1_v5_gn_9_10320 Lactuca sativa HOM05D001670 ORTHO05D002980 2.7e-18 98.2 63 69.8
Lsat_1_v5_gn_4_5981 Lactuca sativa HOM05D005873 ORTHO05D002980 1.3e-15 89.4 59 71.2
Oeu041773.1 Olea europaea HOM05D005873 ORTHO05D042378 1.7e-12 79.0 63 57.1
A06p46270 Brassica napus HOM05D005873 ORTHO05D042378 5.5e-11 73.9 46 67.4
Cpa.g.c47463 Carica papaya HOM05D005873 ORTHO05D007582 9.3e-11 73.2 43 76.7
RcHm_v2.0_Chr2g0132441 Rosa chinensis HOM05D005873 ORTHO05D007582 3.1e-06 58.2 61 52.5


User provided reference genes

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