Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G224000 Populus trichocarpa HOM05D004147 ORTHO05D005606 4.0e-157 558.1 303 100.0
Potri.001G000700 Populus trichocarpa HOM05D004147 ORTHO05D005606 1.9e-146 522.7 304 93.4
Glyma.07G225200 Glycine max HOM05D004147 ORTHO05D005606 6.7e-144 514.2 303 88.1
MD11G1000500 Malus domestica HOM05D004147 ORTHO05D005606 1.1e-143 513.5 303 92.4
Atru.chr3.2044 Acer truncatum HOM05D004147 ORTHO05D005606 1.9e-143 512.7 303 91.7
VMungo0251G0902 Vigna mungo HOM05D004147 ORTHO05D005606 5.7e-143 511.1 275 93.5
Phvul.002G101600 Phaseolus vulgaris HOM05D004147 ORTHO05D005606 1.3e-142 510.0 275 93.1
Glyma.20G025100 Glycine max HOM05D004147 ORTHO05D005606 2.1e-142 509.2 275 92.7
MD03G1000100 Malus domestica HOM05D004147 ORTHO05D005606 2.1e-142 509.2 303 91.7
Prupe.6G000600 Prunus persica HOM05D004147 ORTHO05D005606 2.1e-142 509.2 309 92.2
CANSAT35G0441 Cannabis sativa HOM05D004147 ORTHO05D005606 2.8e-142 508.8 303 90.8
FvH4_3g46070 Fragaria vesca HOM05D004147 ORTHO05D005606 2.8e-142 508.8 276 93.5
Thecc.09G206400 Theobroma cacao HOM05D004147 ORTHO05D005606 2.8e-142 508.8 275 93.5
Cpa.g.sc119.7 Carica papaya HOM05D004147 ORTHO05D005606 6.3e-142 507.7 275 92.7
CiPaw.13G180000 Carya illinoinensis HOM05D004147 ORTHO05D005606 1.1e-141 506.9 303 86.8
COL.COLO4_35060 Corchorus olitorius HOM05D004147 ORTHO05D005606 1.8e-141 506.1 275 93.1
Duzib150G1508 Durio zibethinus HOM05D004147 ORTHO05D005606 1.8e-141 506.1 303 92.7
QL01p007763 Quercus lobata HOM05D004147 ORTHO05D005606 2.4e-141 505.8 307 90.2
Ca_18795_v3 Cicer arietinum L. HOM05D004147 ORTHO05D005606 3.1e-141 505.4 303 90.4
Gohir.D03G147100 Gossypium hirsutum HOM05D004147 ORTHO05D005606 4.1e-141 505.0 303 89.1
Dinv06248 Davidia involucrata HOM05D004147 ORTHO05D005606 6.9e-141 504.2 303 85.8
Dinv15522 Davidia involucrata HOM05D004147 ORTHO05D005606 6.9e-141 504.2 303 85.8
Gohir.D05G000800 Gossypium hirsutum HOM05D004147 ORTHO05D005606 9.0e-141 503.8 303 86.8
CSS0011494 Camellia sinensis var. sinensis HOM05D004147 ORTHO05D005606 1.2e-140 503.4 274 90.9
Gohir.A03G021600 Gossypium hirsutum HOM05D004147 ORTHO05D005606 3.4e-140 501.9 304 88.8
PGR102G2115 Punica granatum HOM05D004147 ORTHO05D005606 4.5e-140 501.5 303 84.2
Lj4g0017588 Lotus japonicus HOM05D004147 ORTHO05D005606 5.9e-140 501.1 276 92.0
Gohir.A05G000500 Gossypium hirsutum HOM05D004147 ORTHO05D005606 7.6e-140 500.7 303 86.5
TPR.G34051 Trifolium pratense HOM05D004147 ORTHO05D005606 1.9e-138 496.1 274 90.5
Ciclev10016090m.g Citrus clementina HOM05D004147 ORTHO05D005606 2.5e-138 495.7 303 90.4
Nn2g15911 Nelumbo nucifera HOM05D004147 ORTHO05D005606 9.3e-138 493.8 275 89.8
Gorai.003G154600 Gossypium raimondii HOM05D004147 ORTHO05D005606 1.2e-137 493.4 276 91.7
FAN11G3393 Fragaria x ananassa HOM05D004147 ORTHO05D005606 2.1e-137 492.7 302 85.1
Medtr4g083230 Medicago truncatula HOM05D004147 ORTHO05D005606 2.7e-137 492.3 274 90.5
RcHm_v2.0_Chr5g0084131 Rosa chinensis HOM05D004147 ORTHO05D005606 2.7e-137 492.3 303 89.8
CsaV3_1G041490 Cucumis sativus L. HOM05D004147 ORTHO05D005606 3.6e-137 491.9 306 88.6
MELO3C015560.2 Cucumis melo HOM05D004147 ORTHO05D005606 7.9e-137 490.7 306 88.2
FAN16G1044 Fragaria x ananassa HOM05D004147 ORTHO05D005606 7.9e-137 490.7 307 83.7
Duzib170G0806 Durio zibethinus HOM05D004147 ORTHO05D005606 1.3e-136 490.0 274 91.6
Lalb_Chr09g0328961 Lupinus albus HOM05D004147 ORTHO05D005606 3.9e-136 488.4 275 89.8
TAR633G2501 Trochodendron aralioides HOM05D004147 ORTHO05D005606 6.7e-136 487.6 303 82.2
Lalb_Chr16g0385471 Lupinus albus HOM05D004147 ORTHO05D005606 1.1e-135 486.9 275 89.1
arahy.Tifrunner.gnm1.ann1.41N8FB Arachis hypogaea HOM05D004147 ORTHO05D005606 5.7e-135 484.6 275 89.1
arahy.Tifrunner.gnm1.ann1.JJ8YPF Arachis hypogaea HOM05D004147 ORTHO05D005606 5.7e-135 484.6 275 89.1
TAR623G0988 Trochodendron aralioides HOM05D004147 ORTHO05D005606 7.4e-135 484.2 303 82.5
TWI60G0666 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 1.3e-134 483.4 303 82.2
Oeu023957.1 Olea europaea HOM05D004147 ORTHO05D005606 2.2e-134 482.6 275 86.5
Dinv09765 Davidia involucrata HOM05D004147 ORTHO05D005606 2.8e-134 482.3 275 88.4
MBI19_g24069_MAGBIO Magnolia biondii HOM05D004147 ORTHO05D005606 1.4e-133 479.9 269 88.8
TWI34G0273 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 1.4e-133 479.9 303 82.2
FAN21G1018 Fragaria x ananassa HOM05D004147 ORTHO05D005606 2.4e-133 479.2 309 85.8
Sabra01G0000600 Salix brachista HOM05D004147 ORTHO05D005606 9.1e-133 477.2 341 80.1
Sopen01g025520 Solanum pennellii HOM05D004147 ORTHO05D005606 1.2e-132 476.9 275 85.5
Rhsim13G0235300 Rhododendron simsii HOM05D004147 ORTHO05D005606 2.6e-132 475.7 344 73.0
Eucgr.J01722 Eucalyptus grandis HOM05D004147 ORTHO05D005606 5.9e-132 474.6 277 88.1
Hund19733 Selenicereus undatus HOM05D004147 ORTHO05D005606 5.9e-132 474.6 276 85.5
TWI32G0854 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 7.7e-132 474.2 303 84.2
MSTRG.5958 Avicennia marina HOM05D004147 ORTHO05D005606 1.3e-131 473.4 274 84.7
CAN.G1941.2 Capsicum annuum HOM05D004147 ORTHO05D005606 1.7e-131 473.0 303 79.5
Sc09g0002150 Simmondsia chinensis HOM05D004147 ORTHO05D005606 2.9e-131 472.2 304 78.6
Cc01_g00350 Coffea canephora HOM05D004147 ORTHO05D005606 6.5e-131 471.1 303 81.2
Migut.N00528 Erythranthe guttata HOM05D004147 ORTHO05D005606 8.5e-131 470.7 275 84.4
Aqoxy2G00002 Aquilegia oxysepala HOM05D004147 ORTHO05D005606 1.9e-130 469.5 289 81.7
AUR62040894 Chenopodium quinoa HOM05D004147 ORTHO05D005606 1.9e-130 469.5 276 84.8
MSTRG.19397 Avicennia marina HOM05D004147 ORTHO05D005606 2.7e-129 465.7 303 78.9
ClCG03G014680 Citrullus lanatus HOM05D004147 ORTHO05D005606 2.7e-129 465.7 306 84.6
PSO541G5718 Papaver somniferum HOM05D004147 ORTHO05D005606 4.6e-129 464.9 277 84.5
PSO675G6472 Papaver somniferum HOM05D004147 ORTHO05D005606 6.1e-129 464.5 277 84.1
CARHR125880 Cardamine hirsuta HOM05D004147 ORTHO05D005606 7.9e-129 464.2 303 78.5
DCAR_001959 Daucus carota HOM05D004147 ORTHO05D005606 7.9e-129 464.2 275 84.4
PSO339G2679 Papaver somniferum HOM05D004147 ORTHO05D005606 1.8e-128 463.0 301 78.1
PSO384G4999 Papaver somniferum HOM05D004147 ORTHO05D005606 1.8e-128 463.0 301 78.1
Thhalv10017021m.g Eutrema salsugineum HOM05D004147 ORTHO05D005606 8.8e-128 460.7 275 83.6
Sp4g14490 Schrenkiella parvula HOM05D004147 ORTHO05D005606 1.1e-127 460.3 275 83.3
Haze_22914 Corylus avellana HOM05D004147 ORTHO05D005606 4.4e-127 458.4 299 81.9
Sed0000702 Sechium edule HOM05D004147 ORTHO05D005606 5.7e-127 458.0 275 81.8
EL10Ac4g10393 Beta vulgaris HOM05D004147 ORTHO05D005606 2.2e-126 456.1 277 83.4
ATR0068G003 Amborella trichopoda HOM05D004147 ORTHO05D005606 2.8e-126 455.7 275 82.2
Hma1.2p1_0589F.1_g184660 Hydrangea macrophylla HOM05D004147 ORTHO05D005606 1.1e-125 453.8 322 75.2
Carub.0004s1343 Capsella rubella HOM05D004147 ORTHO05D005606 6.9e-125 451.1 275 81.8
ECA238G2098 Erigeron canadensis HOM05D004147 ORTHO05D005606 9.1e-125 450.7 284 82.7
SGA_v2.0_scaffold6G03333 Striga asiatica HOM05D000201 ORTHO05D005606 1.2e-124 450.3 312 75.0
AT2G32080 Arabidopsis thaliana HOM05D004147 ORTHO05D005606 5.9e-124 448.0 275 82.2
BraA05t20280Z Brassica rapa HOM05D004147 ORTHO05D005606 5.9e-124 448.0 276 80.8
HanXRQChr14g0437101 Helianthus annuus HOM05D004147 ORTHO05D005606 5.9e-124 448.0 284 82.4
C04p17540 Brassica napus HOM05D004147 ORTHO05D005606 1.0e-123 447.2 276 81.2
BolC4t23301H Brassica oleracea HOM05D004147 ORTHO05D005606 1.0e-123 447.2 276 81.2
Peaxi162Scf01181g00019 Petunia axillaris HOM05D004147 ORTHO05D005606 1.7e-123 446.4 310 74.8
vmacro04279 Vaccinium macrocarpon HOM05D004147 ORTHO05D005606 1.7e-123 446.4 298 76.8
GSVIVG01025513001 Vitis vinifera HOM05D004147 ORTHO05D005606 1.7e-123 446.4 303 78.5
Sc16g0009630 Simmondsia chinensis HOM05D004147 ORTHO05D005606 2.9e-123 445.7 304 75.3
Aa31LG5G4940 Aethionema arabicum HOM05D004147 ORTHO05D005606 3.8e-123 445.3 299 77.3
Ah.04g161370 Amaranthus hybridus HOM05D004147 ORTHO05D005606 3.8e-123 445.3 284 81.3
A05p13420 Brassica napus HOM05D004147 ORTHO05D005606 3.8e-123 445.3 276 81.2
HPP92_018009 Vanilla planifolia HOM05D004147 ORTHO05D005606 1.9e-122 443.0 277 80.1
SGA_v2.0_scaffold3G01703 Striga asiatica HOM05D004147 ORTHO05D005606 3.2e-122 442.2 275 81.1
AL103U10050 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 7.2e-122 441.0 275 82.2
AL4G27460 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 7.2e-122 441.0 275 82.2
Actinidia16222 Actinidia chinensis HOM05D000201 ORTHO05D001601 3.6e-121 438.7 274 81.8
AUR62042623 Chenopodium quinoa HOM05D004147 ORTHO05D005606 7.9e-121 437.6 311 73.3
Os01g0260700 Oryza sativa ssp. japonica HOM05D004147 ORTHO05D005606 8.2e-118 427.6 278 77.7
Zm00001eb333400 Zea mays HOM05D004147 ORTHO05D005606 1.1e-117 427.2 278 77.7
Zm00001eb127970 Zea mays HOM05D004147 ORTHO05D005606 4.1e-117 425.2 305 72.5
SalBow3G0983 Salvia bowleyana HOM05D004147 ORTHO05D005606 5.3e-117 424.9 282 79.8
CDE09G0171 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 9.1e-117 424.1 266 75.6
CDE04G0726 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 2.5e-114 416.0 303 69.3
Manes.15G111500 Manihot esculenta HOM05D004147 ORTHO05D005606 5.2e-112 408.3 235 88.9
Psat7g134480 Pisum sativum HOM05D004147 ORTHO05D005606 8.8e-112 407.5 224 91.5
Sed0015400 Sechium edule HOM05D004147 ORTHO05D005606 5.0e-107 391.7 259 85.7
CDE02G2463 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 3.6e-105 385.6 266 71.4
CAN.G281.7 Capsicum annuum HOM05D004147 ORTHO05D005606 2.8e-102 375.9 275 71.6
Nitab4.5_0000075g0060 Nicotiana tabacum HOM05D004147 ORTHO05D005606 8.3e-102 374.4 275 70.2
Nitab4.5_0000890g0080 Nicotiana tabacum HOM05D004147 ORTHO05D005606 8.3e-102 374.4 275 70.2
Lsat_1_v5_gn_2_50601 Lactuca sativa HOM05D004147 ORTHO05D005606 1.6e-100 370.2 277 70.4
TAR623G0822 Trochodendron aralioides HOM05D004147 ORTHO05D005606 1.2e-97 360.5 205 88.3
unitig_62.g23531 Utricularia gibba HOM05D004147 ORTHO05D005606 1.4e-96 357.1 257 71.2
Sabra03G0166400 Salix brachista HOM05D004147 ORTHO05D005606 2.3e-91 339.7 181 95.6
CDE08G0894 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 3.8e-91 339.0 241 69.3
AagrBONN_evm.TU.Sc2ySwM_368.1732 Anthoceros agrestis HOM05D004147 ORTHO05D005606 1.4e-88 330.5 283 61.8
Pp3c17_4780 Physcomitrium patens HOM05D004147 ORTHO05D005606 4.0e-88 328.9 282 60.6
Pp3c14_13490 Physcomitrium patens HOM05D004147 ORTHO05D005606 1.5e-87 327.0 280 60.0
BcaB02g10449 Brassica carinata HOM05D004147 ORTHO05D005606 2.0e-87 326.6 214 79.0
SEGI_18063 Sequoiadendron giganteum HOM05D004147 ORTHO05D005606 2.2e-86 323.2 269 64.3
CDE02G0470 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 4.9e-86 322.0 248 66.9
Nn7g35773 Nelumbo nucifera HOM05D004147 ORTHO05D005606 1.8e-85 320.1 206 81.1
Actinidia00922 Actinidia chinensis HOM05D004147 ORTHO05D005606 1.2e-84 317.4 190 83.7
CBR_g3650 Chara braunii HOM05D004147 ORTHO05D005606 2.3e-83 313.2 297 57.9
CDE08G0994 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 2.1e-81 306.6 202 72.3
Solyc01g049680.3 Solanum lycopersicum HOM05D004147 ORTHO05D005606 1.1e-77 294.3 181 80.7
SMO164G0008 Selaginella moellendorffii HOM05D004147 ORTHO05D005606 5.0e-75 285.4 266 57.1
Lj1A564T30 Lonicera japonica HOM05D004147 ORTHO05D005606 4.9e-70 268.9 246 64.2
Gorai.009G000700 Gossypium raimondii HOM05D004147 ORTHO05D005606 3.5e-68 262.7 147 91.2
unitig_52.g17528 Utricularia gibba HOM05D004147 ORTHO05D005606 5.1e-67 258.8 190 68.9
Sabra01G0000400 Salix brachista HOM05D004147 ORTHO05D005606 5.6e-50 202.2 116 88.8
Gorai.009G000600 Gossypium raimondii HOM05D004147 ORTHO05D005606 6.4e-46 188.7 126 78.6
Solyc01g049690.4 Solanum lycopersicum HOM05D004147 ORTHO05D005606 1.1e-45 188.0 98 91.8
HPP92_026678 Vanilla planifolia HOM05D004147 ORTHO05D005606 9.3e-45 184.9 106 84.0
Potri.013G061100 Populus trichocarpa HOM05D004147 ORTHO05D005606 1.5e-42 177.6 260 40.8
CAN.G640.3 Capsicum annuum HOM05D004147 ORTHO05D005606 3.7e-41 172.9 125 71.2
Lj1A564T31 Lonicera japonica HOM05D004147 ORTHO05D005606 3.1e-40 169.9 122 72.1
CAN.G678.10 Capsicum annuum HOM05D004147 ORTHO05D005606 9.9e-39 164.9 106 77.4
Sabra01G0000300 Salix brachista HOM05D004147 ORTHO05D005606 2.7e-36 156.8 111 85.6
MBI05_g14947_MAGBIO Magnolia biondii HOM05D000130 ORTHO05D002599 4.6e-36 156.0 94 80.9
FAN25G3109 Fragaria x ananassa HOM05D004147 ORTHO05D005606 1.3e-35 154.5 80 93.8
PRCOL_00001079 Prasinoderma coloniale HOM05D004147 ORTHO05D005606 6.2e-33 145.6 268 33.6
Lsat_1_v5_gn_4_94280 Lactuca sativa HOM05D004147 ORTHO05D005606 3.4e-31 139.8 247 39.3
unitig_52.g17527 Utricularia gibba HOM05D004147 ORTHO05D005606 3.4e-31 139.8 108 68.5
Cre06.g278208 Chlamydomonas reinhardtii HOM05D004147 ORTHO05D005606 1.8e-27 127.5 251 32.7
TWI32G1322 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 2.3e-27 127.1 258 33.7
C08p28370 Brassica napus HOM05D004147 ORTHO05D021856 3.9e-27 126.3 118 61.9
BolC8t50447H Brassica oleracea HOM05D004147 ORTHO05D021856 3.9e-27 126.3 118 61.9
A03p64870 Brassica napus HOM05D004147 ORTHO05D005606 5.1e-27 125.9 186 43.5
Oeu023697.1 Olea europaea HOM05D004147 ORTHO05D005606 1.5e-26 124.4 66 89.4
BolC2t11193H Brassica oleracea HOM05D004147 ORTHO05D005606 2.5e-26 123.6 118 61.9
BcaC03g17178 Brassica carinata HOM05D004147 ORTHO05D021856 4.3e-26 122.9 105 66.7
BraA03t15549Z Brassica rapa HOM05D004147 ORTHO05D018802 4.3e-26 122.9 118 61.0
BolC5t32093H Brassica oleracea HOM05D004147 ORTHO05D021856 7.4e-26 122.1 118 61.0
C05p33620 Brassica napus HOM05D004147 ORTHO05D021856 8.2e-25 118.6 118 60.2
C02p30750 Brassica napus HOM05D004147 ORTHO05D021856 2.4e-24 117.1 118 59.3
BraA05t19995Z Brassica rapa HOM05D004147 ORTHO05D018802 7.2e-21 105.5 155 41.3
BcaC07g39671 Brassica carinata HOM05D004147 ORTHO05D005606 1.2e-20 104.8 87 64.4
BcaC07g38232 Brassica carinata HOM05D004147 ORTHO05D005606 6.1e-20 102.4 155 41.3
BraA09t36212Z Brassica rapa HOM05D004147 ORTHO05D018802 5.7e-18 95.9 83 63.9
TAR623G1050 Trochodendron aralioides HOM05D004147 ORTHO05D005606 9.1e-16 88.6 73 67.1
HanXRQChr10g0307541 Helianthus annuus HOM05D004147 ORTHO05D005606 4.2e-13 79.7 104 44.2
Lsat_1_v5_gn_8_97821 Lactuca sativa HOM05D004147 ORTHO05D005606 1.2e-12 78.2 71 62.0


User provided reference genes

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