Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G222200 Populus trichocarpa HOM05D005410 ORTHO05D007394 7.3e-171 604.0 345 100.0
Sabra03G0165200 Salix brachista HOM05D005410 ORTHO05D007394 6.0e-149 531.2 345 83.2
Manes.15G110100 Manihot esculenta HOM05D005410 ORTHO05D007394 1.7e-135 486.5 346 76.3
Atru.chr3.2102 Acer truncatum HOM05D005410 ORTHO05D007394 4.8e-130 468.4 347 75.8
Atru.chr3.2395 Acer truncatum HOM05D005410 ORTHO05D007394 2.4e-129 466.1 347 75.8
QL01p010651 Quercus lobata HOM05D005410 ORTHO05D007394 6.9e-129 464.5 345 72.2
Nn2g15872 Nelumbo nucifera HOM05D005410 ORTHO05D007394 2.0e-128 463.0 347 75.2
Cpa.g.sc119.36 Carica papaya HOM05D005410 ORTHO05D007394 2.9e-127 459.1 345 71.3
Haze_22935 Corylus avellana HOM05D005410 ORTHO05D007394 3.8e-127 458.8 346 76.3
TAR369G0462 Trochodendron aralioides HOM05D005410 ORTHO05D007394 5.5e-126 454.9 346 74.3
Dinv13479 Davidia involucrata HOM05D005410 ORTHO05D007394 1.6e-125 453.4 330 80.9
Prupe.6G002700 Prunus persica HOM05D005410 ORTHO05D007394 2.7e-125 452.6 346 72.0
vmacro17045 Vaccinium macrocarpon HOM05D005410 ORTHO05D007394 2.3e-124 449.5 350 70.6
CiPaw.14G137400 Carya illinoinensis HOM05D005410 ORTHO05D007394 1.9e-123 446.4 343 70.6
FAN16G2022 Fragaria x ananassa HOM05D005410 ORTHO05D007394 4.3e-123 445.3 345 68.7
Eucgr.J01758 Eucalyptus grandis HOM05D005410 ORTHO05D007394 9.7e-123 444.1 345 73.9
FvH4_3g45781 Fragaria vesca HOM05D005410 ORTHO05D007394 1.3e-122 443.7 345 68.4
FAN11G0543 Fragaria x ananassa HOM05D005410 ORTHO05D007394 1.3e-122 443.7 345 68.4
Rhsim13G0233300 Rhododendron simsii HOM05D005410 ORTHO05D007394 1.3e-122 443.7 344 74.1
RcHm_v2.0_Chr5g0083861 Rosa chinensis HOM05D005410 ORTHO05D007394 1.6e-122 443.4 345 69.0
FAN25G1403 Fragaria x ananassa HOM05D005410 ORTHO05D007394 3.7e-122 442.2 345 68.1
Ciclev10015873m.g Citrus clementina HOM05D005410 ORTHO05D007394 4.8e-122 441.8 344 75.9
PGR102G1996 Punica granatum HOM05D005410 ORTHO05D007394 8.2e-122 441.0 351 71.2
Thecc.09G203200 Theobroma cacao HOM05D005410 ORTHO05D007394 8.2e-122 441.0 349 70.2
FAN11G0605 Fragaria x ananassa HOM05D005410 ORTHO05D007394 1.4e-121 440.3 345 68.1
Actinidia16239 Actinidia chinensis HOM05D005410 ORTHO05D007394 1.8e-121 439.9 347 73.2
CiPaw.13G177700 Carya illinoinensis HOM05D005410 ORTHO05D007394 9.1e-121 437.6 337 71.5
MD11G1002900 Malus domestica HOM05D005410 ORTHO05D007394 9.1e-121 437.6 349 68.8
Thhalv10011629m.g Eutrema salsugineum HOM05D005410 ORTHO05D007394 2.0e-120 436.4 347 73.5
SalBow3G3111 Salvia bowleyana HOM05D005410 ORTHO05D007394 2.6e-120 436.0 345 69.9
Lj1A521T33 Lonicera japonica HOM05D005410 ORTHO05D007394 5.9e-120 434.9 350 70.0
Lj1A522T64 Lonicera japonica HOM05D005410 ORTHO05D007394 5.9e-120 434.9 350 70.0
CARHR045150 Cardamine hirsuta HOM05D005410 ORTHO05D007394 2.2e-119 433.0 345 68.7
CSS0020515 Camellia sinensis var. sinensis HOM05D005410 ORTHO05D007394 3.8e-119 432.2 351 74.6
MD03G1003100 Malus domestica HOM05D005410 ORTHO05D007394 3.8e-119 432.2 348 70.4
AL1G63500 Arabidopsis lyrata HOM05D005410 ORTHO05D007394 5.0e-119 431.8 345 68.4
Carub.0001s4397 Capsella rubella HOM05D005410 ORTHO05D007394 5.0e-119 431.8 345 72.2
Sp1g41090 Schrenkiella parvula HOM05D005410 ORTHO05D007394 5.0e-119 431.8 348 72.4
CANSAT11G0129 Cannabis sativa HOM05D005410 ORTHO05D007394 8.5e-119 431.0 346 72.0
AT1G55480 Arabidopsis thaliana HOM05D005410 ORTHO05D007394 1.4e-118 430.3 345 71.6
Duzib168G1987 Durio zibethinus HOM05D005410 ORTHO05D007394 1.6e-117 426.8 347 68.6
arahy.Tifrunner.gnm1.ann1.63K8WX Arachis hypogaea HOM05D005410 ORTHO05D007394 7.9e-117 424.5 345 73.3
arahy.Tifrunner.gnm1.ann1.GYZC8Z Arachis hypogaea HOM05D005410 ORTHO05D007394 1.4e-116 423.7 345 73.3
BcaB02g10821 Brassica carinata HOM05D005410 ORTHO05D007394 1.8e-116 423.3 345 68.1
Aa31LG10G770 Aethionema arabicum HOM05D005410 ORTHO05D007394 2.3e-116 422.9 346 72.0
COL.COLO4_07519 Corchorus olitorius HOM05D005410 ORTHO05D007394 3.0e-116 422.5 352 67.9
Glyma.05G166800 Glycine max HOM05D005410 ORTHO05D007394 3.0e-116 422.5 343 73.2
CsaV3_4G017550 Cucumis sativus L. HOM05D005410 ORTHO05D007394 6.7e-116 421.4 347 68.3
Medtr8g088420 Medicago truncatula HOM05D005410 ORTHO05D007394 6.7e-116 421.4 340 68.8
Oeu023977.1 Olea europaea HOM05D005410 ORTHO05D007394 1.5e-115 420.2 245 86.5
Lalb_Chr12g0204581 Lupinus albus HOM05D005410 ORTHO05D007394 2.6e-115 419.5 355 67.6
Gohir.D04G130700 Gossypium hirsutum HOM05D005410 ORTHO05D007394 5.7e-115 418.3 346 67.3
VMungo0251G1592 Vigna mungo HOM05D005410 ORTHO05D007394 5.7e-115 418.3 344 72.1
Gohir.A04G090700 Gossypium hirsutum HOM05D005410 ORTHO05D007394 7.4e-115 417.9 346 67.3
A05p17460 Brassica napus HOM05D005410 ORTHO05D007394 9.7e-115 417.5 345 68.4
BraA05t20641Z Brassica rapa HOM05D005410 ORTHO05D007394 9.7e-115 417.5 345 68.4
C06p16070 Brassica napus HOM05D005410 ORTHO05D007394 1.3e-114 417.2 345 68.1
BolC6t36806H Brassica oleracea HOM05D005410 ORTHO05D007394 1.3e-114 417.2 345 68.1
Glyma.08G124900 Glycine max HOM05D005410 ORTHO05D007394 1.3e-114 417.2 344 72.7
Gorai.012G114400 Gossypium raimondii HOM05D005410 ORTHO05D007394 1.3e-114 417.2 346 67.1
BcaC08g44199 Brassica carinata HOM05D005410 ORTHO05D007394 1.7e-114 416.8 345 69.9
Migut.N00542 Erythranthe guttata HOM05D005410 ORTHO05D007394 1.7e-114 416.8 346 66.5
MSTRG.12800 Avicennia marina HOM05D005410 ORTHO05D007394 2.2e-114 416.4 343 67.9
Lsat_1_v5_gn_6_55740 Lactuca sativa HOM05D005410 ORTHO05D007394 2.2e-114 416.4 347 66.3
MBI05_g04454_MAGBIO Magnolia biondii HOM05D005410 ORTHO05D007394 2.8e-114 416.0 354 66.1
Oeu023974.1 Olea europaea HOM05D005410 ORTHO05D007394 6.3e-114 414.8 245 85.3
THA.LOC104810318 Tarenaya hassleriana HOM05D005410 ORTHO05D007394 6.3e-114 414.8 344 66.9
SGA_v2.0_scaffold6G03314 Striga asiatica HOM05D005410 ORTHO05D007394 8.2e-114 414.5 346 67.3
ClCG02G024420 Citrullus lanatus HOM05D005410 ORTHO05D007394 1.1e-113 414.1 342 67.5
ECA233G0964 Erigeron canadensis HOM05D005410 ORTHO05D007394 1.1e-113 414.1 346 65.9
SGA_v2.0_scaffold3G01679 Striga asiatica HOM05D005410 ORTHO05D007394 1.4e-113 413.7 344 67.2
Oeu060891.1 Olea europaea HOM05D005410 ORTHO05D007394 2.0e-112 409.8 326 72.4
DCAR_023818 Daucus carota HOM05D005410 ORTHO05D007394 2.6e-112 409.5 346 69.9
Potri.001G002700 Populus trichocarpa HOM05D005410 ORTHO05D007394 2.6e-112 409.5 329 76.0
Sed0021908 Sechium edule HOM05D005410 ORTHO05D007394 2.6e-112 409.5 352 66.2
HanXRQChr07g0186621 Helianthus annuus HOM05D005410 ORTHO05D007394 7.7e-112 407.9 345 64.1
Nitab4.5_0006195g0040 Nicotiana tabacum HOM05D005410 ORTHO05D007394 7.7e-112 407.9 244 85.2
Phvul.002G247200 Phaseolus vulgaris HOM05D005410 ORTHO05D007394 7.7e-112 407.9 343 69.7
CDE10G1105 Ceratophyllum demersum HOM05D005410 ORTHO05D007394 1.0e-111 407.5 341 63.6
AUR62005847 Chenopodium quinoa HOM05D005410 ORTHO05D007394 2.2e-111 406.4 244 83.2
PGSC0003DMG400032122 Solanum tuberosum HOM05D005410 ORTHO05D007394 2.9e-111 406.0 244 84.8
EL10Ac4g10389 Beta vulgaris HOM05D005410 ORTHO05D007394 3.8e-111 405.6 244 83.6
Nitab4.5_0000551g0050 Nicotiana tabacum HOM05D005410 ORTHO05D007394 6.5e-111 404.8 244 85.2
Sopen01g001540 Solanum pennellii HOM05D005410 ORTHO05D007394 8.5e-111 404.4 244 84.8
Aqoxy1G00490 Aquilegia oxysepala HOM05D005410 ORTHO05D007394 5.5e-110 401.7 345 64.3
AUR62032839 Chenopodium quinoa HOM05D005410 ORTHO05D007394 1.2e-109 400.6 243 82.3
Lj4g0005740 Lotus japonicus HOM05D005410 ORTHO05D007394 2.1e-109 399.8 345 64.1
CAN.G1834.14 Capsicum annuum HOM05D005410 ORTHO05D007394 4.7e-109 398.7 316 69.6
Sc09g0000010 Simmondsia chinensis HOM05D005410 ORTHO05D007394 7.9e-109 397.9 338 69.5
HPP92_001905 Vanilla planifolia HOM05D005410 ORTHO05D007394 3.0e-108 396.0 245 82.9
unitig_0.g1148 Utricularia gibba HOM05D005410 ORTHO05D007394 2.8e-106 389.4 338 64.5
Cc01_g00190 Coffea canephora HOM05D005410 ORTHO05D007394 8.2e-106 387.9 345 68.1
Peaxi162Scf00036g00221 Petunia axillaris HOM05D005410 ORTHO05D007394 1.1e-105 387.5 306 71.6
Cfa009554 Carpinus fangiana HOM05D005410 ORTHO05D007394 5.3e-105 385.2 298 74.8
Hund13622 Selenicereus undatus HOM05D005410 ORTHO05D007394 2.6e-104 382.9 245 78.4
ATR0697G079 Amborella trichopoda HOM05D005410 ORTHO05D007394 2.2e-103 379.8 243 80.7
PSO339G0242 Papaver somniferum HOM05D005410 ORTHO05D007394 2.9e-103 379.4 345 62.0
PSO384G0864 Papaver somniferum HOM05D005410 ORTHO05D007394 6.5e-103 378.3 351 60.1
Zm00001eb300990 Zea mays HOM05D005410 ORTHO05D007394 4.4e-99 365.5 244 73.4
SEGI_35670 Sequoiadendron giganteum HOM05D005410 ORTHO05D007394 6.3e-98 361.7 244 73.0
GSVIVG01025488001 Vitis vinifera HOM05D005410 ORTHO05D007394 9.1e-97 357.8 210 85.2
TAR623G0245 Trochodendron aralioides HOM05D005410 ORTHO05D007394 1.3e-95 354.0 216 83.8
TPR.G6787 Trifolium pratense HOM05D005410 ORTHO05D007394 8.3e-90 334.7 288 65.3
Os07g0171100 Oryza sativa ssp. japonica HOM05D005410 ORTHO05D007394 5.4e-89 332.0 217 76.5
Pp3c19_15590 Physcomitrium patens HOM05D005410 ORTHO05D007394 1.0e-84 317.8 239 64.9
SMO329G0030 Selaginella moellendorffii HOM05D005410 ORTHO05D007394 1.8e-84 317.0 240 65.8
SMO238G0020 Selaginella moellendorffii HOM05D005410 ORTHO05D007394 4.0e-84 315.8 240 65.4
Mapoly0020s0152 Marchantia polymorpha HOM05D005410 ORTHO05D007394 4.9e-82 308.9 245 62.9
arahy.Tifrunner.gnm1.ann1.CQ6EI1 Arachis hypogaea HOM05D005410 ORTHO05D007394 8.9e-76 288.1 345 59.4
CBR_g66797 Chara braunii HOM05D005410 ORTHO05D007394 1.4e-73 280.8 239 57.7
vmacro23200 Vaccinium macrocarpon HOM05D005410 ORTHO05D007394 1.9e-65 253.8 317 48.6
Hma1.2p1_0256F.1_g103360 Hydrangea macrophylla HOM05D005410 ORTHO05D007394 2.3e-63 246.9 201 76.1
vmacro04262 Vaccinium macrocarpon HOM05D005410 ORTHO05D007394 2.3e-63 246.9 209 66.5
Psat7g064320 Pisum sativum HOM05D005410 ORTHO05D007394 5.2e-60 235.7 231 60.2
Ah.06g190610 Amaranthus hybridus HOM05D005410 ORTHO05D007394 1.6e-56 224.2 139 80.6
EL10Ac8g20065 Beta vulgaris HOM05D005410 ORTHO05D007394 2.3e-55 220.3 141 78.7
Pp3c22_13930 Physcomitrium patens HOM05D005410 ORTHO05D007394 3.0e-55 219.9 239 52.3
MELO3C014728.2 Cucumis melo HOM05D005410 ORTHO05D007394 3.8e-50 203.0 220 58.2
CDE10G0059 Ceratophyllum demersum HOM05D005410 ORTHO05D007394 1.1e-46 191.4 339 37.8
Solyc01g005520.4 Solanum lycopersicum HOM05D005410 ORTHO05D007394 2.5e-46 190.3 158 65.8
PRCOL_00004676 Prasinoderma coloniale HOM05D005410 ORTHO05D007394 4.7e-45 186.0 251 37.5
Psat7g062240 Pisum sativum HOM05D005410 ORTHO05D007394 1.8e-44 184.1 248 48.8
MCO13G101 Micromonas commoda HOM05D005410 ORTHO05D007394 2.4e-41 173.7 246 39.4
Ciclev10018072m.g Citrus clementina HOM05D005410 ORTHO05D007394 1.1e-38 164.9 103 77.7
Psat7g064400 Pisum sativum HOM05D005410 ORTHO05D007394 4.0e-36 156.4 92 87.0
Cre01.g031100 Chlamydomonas reinhardtii HOM05D005410 ORTHO05D007394 4.5e-35 152.9 260 34.2
AagrBONN_evm.TU.Sc2ySwM_117.774 Anthoceros agrestis HOM05D005410 ORTHO05D007394 1.2e-32 144.8 118 61.9
Ca_17847_v3 Cicer arietinum L. HOM05D005410 ORTHO05D007394 1.8e-20 104.4 68 69.1
Cfa009551 Carpinus fangiana HOM05D005410 ORTHO05D007394 4.0e-20 103.2 70 75.7
Psat7g064480 Pisum sativum HOM05D005410 ORTHO05D007394 2.2e-18 97.4 93 58.1
Psat7g064520 Pisum sativum HOM05D005410 ORTHO05D007394 9.3e-17 92.0 55 80.0
BcaB04g16956 Brassica carinata HOM05D005410 ORTHO05D009181 3.0e-15 87.0 65 64.6
C06p10410 Brassica napus HOM05D005410 ORTHO05D040422 3.0e-15 87.0 77 58.4
BolC6t36118H Brassica oleracea HOM05D005410 ORTHO05D040422 3.0e-15 87.0 77 58.4
TAR626G1406 Trochodendron aralioides HOM05D004228 ORTHO05D005137 1.5e-14 84.7 97 48.5
Mapoly0060s0015 Marchantia polymorpha HOM05D005823 ORTHO05D007536 6.5e-10 69.3 77 36.4
AagrBONN_evm.TU.Sc2ySwM_228.3021 Anthoceros agrestis HOM05D005823 ORTHO05D007536 8.5e-10 68.9 77 39.0
MCO05G137 Micromonas commoda HOM05D005410 ORTHO05D025019 1.9e-09 67.8 131 30.5
Pp3c16_6290 Physcomitrium patens HOM05D005823 ORTHO05D007536 1.2e-08 65.1 77 37.7
Gorai.007G129100 Gossypium raimondii HOM05D003036 ORTHO05D008712 1.4e-07 61.6 94 34.0
ATR0796G057 Amborella trichopoda HOM05D003036 ORTHO05D008712 2.3e-07 60.8 88 33.0
Lalb_Chr18g0047151 Lupinus albus HOM05D003036 ORTHO05D008712 3.0e-07 60.5 88 36.4
Cre10.g439350 Chlamydomonas reinhardtii HOM05D005410 ORTHO05D025019 3.9e-07 60.1 151 31.8
Gohir.A11G115400 Gossypium hirsutum HOM05D003036 ORTHO05D008712 3.9e-07 60.1 88 35.2
Gohir.D11G120400 Gossypium hirsutum HOM05D003036 ORTHO05D008712 6.7e-07 59.3 88 34.1
VMungo1383G2530 Vigna mungo HOM05D003036 ORTHO05D008712 8.8e-07 58.9 88 34.1
MBI18_g21837_MAGBIO Magnolia biondii HOM05D003036 ORTHO05D008712 1.1e-06 58.5 97 33.0
THA.LOC104801568 Tarenaya hassleriana HOM05D003036 ORTHO05D008712 1.1e-06 58.5 94 34.0
Cfa005952 Carpinus fangiana HOM05D003036 ORTHO05D008712 1.5e-06 58.2 97 34.0
Phvul.001G205600 Phaseolus vulgaris HOM05D003036 ORTHO05D008712 1.5e-06 58.2 88 33.0
Psat3g022640 Pisum sativum HOM05D003036 ORTHO05D008712 1.5e-06 58.2 99 33.3
SalBow3G3623 Salvia bowleyana HOM05D003036 ORTHO05D008712 1.5e-06 58.2 88 33.0
TPR.G9618 Trifolium pratense HOM05D003036 ORTHO05D008712 1.5e-06 58.2 99 33.3
CSS0028015 Camellia sinensis var. sinensis HOM05D003036 ORTHO05D008712 1.9e-06 57.8 88 34.1
Migut.D00194 Erythranthe guttata HOM05D003036 ORTHO05D008712 1.9e-06 57.8 88 34.1
Glyma.03G212900 Glycine max HOM05D003036 ORTHO05D008712 1.9e-06 57.8 88 33.0
MD03G1284800 Malus domestica HOM05D003036 ORTHO05D008712 1.9e-06 57.8 88 34.1
PRCOL_00006506 Prasinoderma coloniale HOM05D005410 ORTHO05D025019 1.9e-06 57.8 131 30.5
CANSAT25G2142 Cannabis sativa HOM05D003036 ORTHO05D008712 2.5e-06 57.4 88 34.1
Ca_09145_v3 Cicer arietinum L. HOM05D003036 ORTHO05D008712 2.5e-06 57.4 88 33.0
Medtr7g108590 Medicago truncatula HOM05D003036 ORTHO05D008712 2.5e-06 57.4 97 33.0
CiPaw.07G106200 Carya illinoinensis HOM05D003036 ORTHO05D008712 3.3e-06 57.0 88 33.0
Glyma.19G209800 Glycine max HOM05D003036 ORTHO05D008712 4.3e-06 56.6 88 33.0
Sed0017795 Sechium edule HOM05D003036 ORTHO05D008712 4.3e-06 56.6 95 33.7
Sc05g0004220 Simmondsia chinensis HOM05D003036 ORTHO05D008712 4.3e-06 56.6 88 33.0
arahy.Tifrunner.gnm1.ann1.6AV2XZ Arachis hypogaea HOM05D003036 ORTHO05D008712 5.7e-06 56.2 99 31.3
ClCG10G010650 Citrullus lanatus HOM05D003036 ORTHO05D008712 5.7e-06 56.2 97 32.0
Hund05411 Selenicereus undatus HOM05D003036 ORTHO05D008712 5.7e-06 56.2 88 34.1
Cc01_g20630 Coffea canephora HOM05D003036 ORTHO05D008712 7.4e-06 55.8 94 33.0
CsaV3_4G000660 Cucumis sativus L. HOM05D003036 ORTHO05D008712 7.4e-06 55.8 97 33.0
Oeu011443.1 Olea europaea HOM05D003036 ORTHO05D008712 7.4e-06 55.8 88 33.0
Prupe.8G257900 Prunus persica HOM05D003036 ORTHO05D008712 7.4e-06 55.8 97 33.0
QL12p027123 Quercus lobata HOM05D003036 ORTHO05D008712 7.4e-06 55.8 97 33.0
COL.COLO4_23377 Corchorus olitorius HOM05D003036 ORTHO05D008712 9.7e-06 55.5 88 33.0
Lj1g0010545 Lotus japonicus HOM05D003036 ORTHO05D008712 9.7e-06 55.5 99 31.3


User provided reference genes

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