Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G197900 Populus trichocarpa HOM05D003406 ORTHO05D004026 2.8e-263 912.1 770 100.0
Potri.T125206 Populus trichocarpa HOM05D003406 ORTHO05D004026 1.1e-243 847.0 662 96.7
Potri.001G026800 Populus trichocarpa HOM05D003406 ORTHO05D004026 4.7e-210 735.3 659 89.7
QL04p014603 Quercus lobata HOM05D003406 ORTHO05D004026 4.9e-191 672.2 675 83.1
QL04p014965 Quercus lobata HOM05D003406 ORTHO05D004026 4.1e-190 669.1 675 83.3
CiPaw.13G012800 Carya illinoinensis HOM05D003406 ORTHO05D004026 1.2e-189 667.5 678 81.6
Manes.04G160100 Manihot esculenta HOM05D003406 ORTHO05D004026 1.4e-185 654.1 638 83.9
Duzib106G0689 Durio zibethinus HOM05D003406 ORTHO05D004026 4.9e-183 645.6 662 81.7
Dinv32032 Davidia involucrata HOM05D003406 ORTHO05D004026 3.2e-182 642.9 689 79.8
Manes.11G004700 Manihot esculenta HOM05D003406 ORTHO05D004026 6.0e-181 638.6 672 82.1
Cfa010885 Carpinus fangiana HOM05D003406 ORTHO05D004026 7.8e-181 638.3 656 82.9
Prupe.2G034300 Prunus persica HOM05D003406 ORTHO05D004026 1.1e-179 634.4 670 81.3
Gorai.011G213900 Gossypium raimondii HOM05D003406 ORTHO05D004026 2.5e-179 633.3 671 80.2
CANSAT25G0328 Cannabis sativa HOM05D003406 ORTHO05D004026 3.3e-179 632.9 649 82.4
Gohir.A10G183800 Gossypium hirsutum HOM05D003406 ORTHO05D004026 9.5e-179 631.3 671 81.1
MELO3C005161.2 Cucumis melo HOM05D003406 ORTHO05D004026 1.8e-177 627.1 674 78.9
CsaV3_5G024420 Cucumis sativus L. HOM05D003406 ORTHO05D004026 2.3e-177 626.7 677 79.0
Thecc.10G162300 Theobroma cacao HOM05D003406 ORTHO05D004026 5.2e-177 625.5 682 78.7
Actinidia06245 Actinidia chinensis HOM05D003406 ORTHO05D004026 8.9e-177 624.8 651 82.8
Gohir.D10G190800 Gossypium hirsutum HOM05D003406 ORTHO05D004026 1.5e-176 624.0 671 79.7
Dinv09276 Davidia involucrata HOM05D003406 ORTHO05D004026 1.1e-174 617.8 675 61.0
Haze_03074 Corylus avellana HOM05D003406 ORTHO05D004026 1.4e-174 617.5 628 84.2
TWI63G0701 Tripterygium wilfordii HOM05D003406 ORTHO05D004026 2.4e-174 616.7 679 78.4
MD07G1038200 Malus domestica HOM05D003406 ORTHO05D004026 4.1e-174 615.9 673 81.0
Sabra03G0147300 Salix brachista HOM05D003406 ORTHO05D004026 7.8e-173 611.7 781 75.8
Duzib114G0281 Durio zibethinus HOM05D003406 ORTHO05D004026 4.3e-171 605.9 652 73.3
Sabra01G0019600 Salix brachista HOM05D003406 ORTHO05D004026 1.2e-170 604.4 685 59.7
FvH4_7g02880 Fragaria vesca HOM05D003406 ORTHO05D004026 1.1e-169 601.3 665 79.8
Ciclev10004445m.g Citrus clementina HOM05D003406 ORTHO05D004026 2.4e-169 600.1 667 79.2
RcHm_v2.0_Chr1g0323831 Rosa chinensis HOM05D003406 ORTHO05D004026 1.5e-168 597.4 661 80.2
GSVIVG01013527001 Vitis vinifera HOM05D003406 ORTHO05D004026 2.0e-168 597.0 651 80.6
FAN03G3378 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.4e-168 596.3 665 79.7
Sed0018149 Sechium edule HOM05D003406 ORTHO05D004026 9.9e-168 594.7 668 77.8
Hund13347 Selenicereus undatus HOM05D003406 ORTHO05D004026 1.7e-167 594.0 640 80.3
Eucgr.G03238 Eucalyptus grandis HOM05D003406 ORTHO05D004026 3.8e-167 592.8 665 77.7
CiPaw.14G007200 Carya illinoinensis HOM05D003406 ORTHO05D004026 1.1e-166 591.3 665 79.1
Atru.chr12.1360 Acer truncatum HOM05D003406 ORTHO05D004026 3.9e-164 582.8 670 78.5
Cc00_g06910 Coffea canephora HOM05D003406 ORTHO05D004026 1.5e-163 580.9 674 77.7
FAN06G4607 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.6e-162 576.2 714 61.1
MD02G1288700 Malus domestica HOM05D003406 ORTHO05D004026 8.1e-162 575.1 672 67.7
Sc14g0005750 Simmondsia chinensis HOM05D003406 ORTHO05D004026 3.1e-161 573.2 670 77.8
Glyma.13G198200 Glycine max HOM05D003406 ORTHO05D004026 9.0e-161 571.6 654 80.1
ClCG01G007460 Citrullus lanatus HOM05D003406 ORTHO05D004026 1.2e-160 571.2 768 60.2
Nn7g36639 Nelumbo nucifera HOM05D003406 ORTHO05D004026 1.2e-160 571.2 675 76.1
Lalb_Chr01g0007801 Lupinus albus HOM05D003406 ORTHO05D004026 4.9e-159 565.8 661 78.1
Medtr8g038550 Medicago truncatula HOM05D003406 ORTHO05D004026 1.9e-158 563.9 659 78.1
Ca_23943_v3 Cicer arietinum L. HOM05D003406 ORTHO05D004026 6.0e-157 558.9 660 77.4
CSS0014544 Camellia sinensis var. sinensis HOM05D003406 ORTHO05D004026 3.9e-156 556.2 681 75.2
THA.LOC104826724 Tarenaya hassleriana HOM05D003406 ORTHO05D004026 1.5e-155 554.3 657 77.0
Phvul.011G207400 Phaseolus vulgaris HOM05D003406 ORTHO05D004026 8.1e-154 548.5 651 77.0
EL10Ac2g02817 Beta vulgaris HOM05D003406 ORTHO05D004026 2.0e-152 543.9 665 74.4
Lalb_Chr19g0132381 Lupinus albus HOM05D003406 ORTHO05D004026 5.8e-152 542.3 670 74.6
TAR369G0157 Trochodendron aralioides HOM05D003406 ORTHO05D004026 5.8e-152 542.3 680 74.0
PSO561G0002 Papaver somniferum HOM05D003406 ORTHO05D004026 1.7e-151 540.8 682 72.9
PGR031G1802 Punica granatum HOM05D003406 ORTHO05D004026 4.9e-151 539.3 676 74.9
ECA248G2072 Erigeron canadensis HOM05D003406 ORTHO05D004026 8.4e-151 538.5 670 74.9
VMungo1127G0085 Vigna mungo HOM05D003406 ORTHO05D004026 6.0e-149 532.3 684 57.2
MSTRG.16987 Avicennia marina HOM05D003406 ORTHO05D004026 1.0e-148 531.6 684 73.2
Rhsim07G0066700 Rhododendron simsii HOM05D003406 ORTHO05D004026 1.0e-148 531.6 813 50.9
THA.LOC104819128 Tarenaya hassleriana HOM05D003406 ORTHO05D004026 3.9e-148 529.6 632 77.1
Aqoxy4G02704 Aquilegia oxysepala HOM05D003406 ORTHO05D004026 4.3e-147 526.2 689 72.3
SalBow5G0382 Salvia bowleyana HOM05D003406 ORTHO05D004026 4.3e-147 526.2 685 73.3
PSO063G0746 Papaver somniferum HOM05D003406 ORTHO05D004026 1.6e-146 524.2 649 76.4
Actinidia10165 Actinidia chinensis HOM05D003406 ORTHO05D004026 3.7e-146 523.1 647 51.5
Glyma.15G236500 Glycine max HOM05D003406 ORTHO05D004026 4.8e-146 522.7 650 76.9
SalBow5G3900 Salvia bowleyana HOM05D003406 ORTHO05D004026 1.1e-145 521.5 686 73.2
arahy.Tifrunner.gnm1.ann1.07MYST Arachis hypogaea HOM05D003406 ORTHO05D004026 4.2e-142 509.6 665 65.9
Nitab4.5_0001669g0120 Nicotiana tabacum HOM05D003406 ORTHO05D004026 1.0e-140 505.0 695 61.6
vmacro13749 Vaccinium macrocarpon HOM05D003406 ORTHO05D004026 6.3e-138 495.7 808 51.7
AUR62026878 Chenopodium quinoa HOM05D003406 ORTHO05D004026 2.9e-135 486.9 678 69.9
Peaxi162Scf00341g00714 Petunia axillaris HOM05D003406 ORTHO05D004026 2.9e-135 486.9 685 57.1
Nitab4.5_0000151g0240 Nicotiana tabacum HOM05D003406 ORTHO05D004026 6.5e-135 485.7 695 61.2
Zm00001eb140970 Zea mays HOM05D003406 ORTHO05D004026 5.5e-134 482.6 652 71.2
Migut.B01223 Erythranthe guttata HOM05D003406 ORTHO05D004026 4.6e-133 479.6 677 71.5
arahy.Tifrunner.gnm1.ann1.P8HZNX Arachis hypogaea HOM05D003406 ORTHO05D004026 1.8e-132 477.6 676 70.7
Psat4g192120 Pisum sativum HOM05D003406 ORTHO05D004026 2.3e-132 477.2 531 83.6
Lj7A583T43 Lonicera japonica HOM05D003406 ORTHO05D004026 4.1e-129 466.5 608 73.4
HPP92_025009 Vanilla planifolia HOM05D003406 ORTHO05D004026 6.5e-127 459.1 676 70.1
AUR62037187 Chenopodium quinoa HOM05D003406 ORTHO05D004026 1.1e-126 458.4 679 64.9
HanXRQChr01g0004511 Helianthus annuus HOM05D003406 ORTHO05D004026 2.1e-125 454.1 669 69.7
Lsat_1_v5_gn_1_115021 Lactuca sativa HOM05D003406 ORTHO05D004026 2.1e-125 454.1 662 70.7
HanXRQChr15g0463071 Helianthus annuus HOM05D003406 ORTHO05D004026 3.0e-124 450.3 669 69.7
Lj3g0018542 Lotus japonicus HOM05D003406 ORTHO05D004026 6.9e-121 439.1 588 74.7
BcaB01g05356 Brassica carinata HOM05D003406 ORTHO05D004026 9.1e-121 438.7 655 70.5
A03p06010 Brassica napus HOM05D003406 ORTHO05D004026 2.6e-120 437.2 652 71.8
SGA_v2.0_scaffold124G33625 Striga asiatica HOM05D003406 ORTHO05D004026 2.2e-119 434.1 511 71.6
Sopen08g020990 Solanum pennellii HOM05D003406 ORTHO05D004026 1.2e-117 428.3 677 68.1
ATR0745G072 Amborella trichopoda HOM05D003406 ORTHO05D004026 1.6e-117 427.9 691 68.0
Solyc08g067040.4 Solanum lycopersicum HOM05D003406 ORTHO05D004026 2.1e-117 427.6 677 68.1
Aa31LG11G7380 Aethionema arabicum HOM05D003406 ORTHO05D004026 3.9e-116 423.3 663 70.3
AL6G24100 Arabidopsis lyrata HOM05D003406 ORTHO05D004026 5.7e-115 419.5 631 73.5
Sp6g30540 Schrenkiella parvula HOM05D003406 ORTHO05D004026 5.7e-115 419.5 654 70.9
Carub.0006s1164 Capsella rubella HOM05D003406 ORTHO05D004026 1.3e-114 418.3 643 72.5
AT5G13480 Arabidopsis thaliana HOM05D003406 ORTHO05D004026 2.8e-114 417.2 631 72.1
C03p07050 Brassica napus HOM05D003406 ORTHO05D004026 2.4e-113 414.1 652 71.8
Thhalv10012890m.g Eutrema salsugineum HOM05D003406 ORTHO05D004026 1.0e-111 408.7 652 71.3
BraA03t09938Z Brassica rapa HOM05D003406 ORTHO05D004026 2.9e-111 407.1 684 66.7
BolC3t13203H Brassica oleracea HOM05D003406 ORTHO05D004026 3.8e-111 406.8 665 60.8
BraA02t05170Z Brassica rapa HOM05D003406 ORTHO05D004026 1.9e-110 404.4 652 70.6
A02p01970 Brassica napus HOM05D003406 ORTHO05D004026 2.7e-109 400.6 652 69.5
MBI02_g23406_MAGBIO Magnolia biondii HOM05D003406 ORTHO05D004026 4.4e-107 393.3 348 59.5
BcaNung01149 Brassica carinata HOM05D003406 ORTHO05D004026 8.2e-106 389.0 652 69.8
BolC2t06560H Brassica oleracea HOM05D003406 ORTHO05D004026 1.8e-105 387.9 652 69.8
BcaNung01887 Brassica carinata HOM05D003406 ORTHO05D004026 5.9e-104 382.9 654 69.1
C02p06160 Brassica napus HOM05D003406 ORTHO05D004026 5.9e-104 382.9 592 73.5
TPR.G36971 Trifolium pratense HOM05D003406 ORTHO05D004026 7.0e-97 359.4 411 54.3
AUR62037192 Chenopodium quinoa HOM05D003406 ORTHO05D004026 4.5e-96 356.7 338 57.1
CDE04G3459 Ceratophyllum demersum HOM05D003406 ORTHO05D004026 3.4e-91 340.5 384 54.2
Mapoly0029s0111 Marchantia polymorpha HOM05D003406 ORTHO05D004026 4.9e-82 310.1 461 77.4
PSO782G3285 Papaver somniferum HOM05D003406 ORTHO05D004026 1.6e-80 305.1 552 55.4
SHI03990 Sapria himalayana HOM05D003406 ORTHO05D004026 7.8e-80 302.8 356 49.7
CARHR199960 Cardamine hirsuta HOM05D003406 ORTHO05D004026 4.0e-76 290.4 355 54.1
Hma1.2p1_1396F.1_g280640 Hydrangea macrophylla HOM05D003406 ORTHO05D004026 2.4e-73 281.2 358 76.5
RcHm_v2.0_Chr5g0010661 Rosa chinensis HOM05D003406 ORTHO05D004026 1.0e-71 275.8 439 78.4
SMO353G0072 Selaginella moellendorffii HOM05D003406 ORTHO05D004026 3.0e-71 274.2 422 78.7
unitig_26.g9605 Utricularia gibba HOM05D003406 ORTHO05D004026 1.2e-69 268.9 414 46.4
DCAR_031833 Daucus carota HOM05D003406 ORTHO05D004026 8.1e-69 266.2 293 56.3
CBR_g16799 Chara braunii HOM05D003406 ORTHO05D004026 3.5e-64 250.8 441 73.9
Pp3c16_16500 Physcomitrium patens HOM05D003406 ORTHO05D004026 5.6e-62 243.4 655 61.1
FAN28G2604 Fragaria x ananassa HOM05D003406 ORTHO05D004026 8.1e-61 239.6 429 75.8
FAN19G0629 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.1e-60 239.2 429 76.5
FAN26G1924 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.2e-58 231.5 425 70.8
DCAR_031832 Daucus carota HOM05D003406 ORTHO05D004026 2.4e-57 228.0 132 84.8
AagrBONN_evm.TU.Sc2ySwM_369.461 Anthoceros agrestis HOM05D003406 ORTHO05D004026 5.4e-57 226.9 438 44.7
CBR_g22487 Chara braunii HOM05D003406 ORTHO05D004026 9.2e-57 226.1 666 55.7
Ah.10g030390 Amaranthus hybridus HOM05D003406 ORTHO05D004026 1.7e-55 221.9 145 75.2
SEGI_13935 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 1.7e-50 205.3 129 76.0
Aqoxy2G01593 Aquilegia oxysepala HOM05D003406 ORTHO05D004026 6.0e-48 196.8 166 62.0
PSO782G3453 Papaver somniferum HOM05D003406 ORTHO05D004026 9.6e-46 189.5 274 47.8
ATR0568G096 Amborella trichopoda HOM05D003406 ORTHO05D004026 1.8e-44 185.3 300 42.3
PSO561G0005 Papaver somniferum HOM05D003406 ORTHO05D004026 5.6e-38 163.7 204 51.5
MCO04G412 Micromonas commoda HOM05D003406 ORTHO05D004026 1.6e-37 162.2 365 46.8
SHI03989 Sapria himalayana HOM05D003406 ORTHO05D004026 4.8e-37 160.6 117 66.7
PGSC0003DMG400023151 Solanum tuberosum HOM05D003406 ORTHO05D004026 1.3e-34 152.5 280 43.2
FAN23G2061 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.7e-34 152.1 134 59.0
RcHm_v2.0_Chr3g0482981 Rosa chinensis HOM05D003406 ORTHO05D004026 1.7e-34 152.1 381 75.1
RcHm_v2.0_Chr4g0404661 Rosa chinensis HOM05D003406 ORTHO05D004026 2.4e-33 148.3 404 58.2
RcHm_v2.0_Chr3g0482821 Rosa chinensis HOM05D003406 ORTHO05D004026 3.2e-33 147.9 371 76.0
TPR.G36904 Trifolium pratense HOM05D003406 ORTHO05D004026 1.8e-31 142.1 77 84.4
TPR.G24634 Trifolium pratense HOM05D003406 ORTHO05D004026 1.1e-30 139.4 78 82.1
Os01g0951000 Oryza sativa ssp. japonica HOM05D003406 ORTHO05D004026 4.3e-30 137.5 92 72.8
Actinidia10171 Actinidia chinensis HOM05D003406 ORTHO05D004026 2.8e-29 134.8 118 66.1
FAN13G0969 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.8e-29 134.8 139 49.6
Actinidia13019 Actinidia chinensis HOM05D003406 ORTHO05D004026 1.1e-28 132.9 173 51.4
FAN09G0535 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.4e-28 132.5 136 52.9
Hma1.2p1_1396F.1_g280660 Hydrangea macrophylla HOM05D003406 ORTHO05D004026 1.8e-28 132.1 125 58.4
FvH4_6g22190 Fragaria vesca HOM05D003406 ORTHO05D004026 2.4e-28 131.7 136 52.2
FAN18G4486 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.1e-28 131.3 139 48.2
RcHm_v2.0_Chr3g0486211 Rosa chinensis HOM05D003406 ORTHO05D004026 3.1e-28 131.3 136 54.4
FAN14G5538 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.2e-27 129.4 136 51.5
FvH4_5g25490 Fragaria vesca HOM05D003406 ORTHO05D004026 1.5e-27 129.0 139 47.5
FvH4_5g25550 Fragaria vesca HOM05D003406 ORTHO05D004026 1.5e-27 129.0 139 47.5
SEGI_35311 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 6.5e-26 123.6 342 39.8
SEGI_30282 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 4.6e-24 117.5 89 60.7
Actinidia19465 Actinidia chinensis HOM05D003406 ORTHO05D004026 5.1e-23 114.0 227 43.2
SEGI_28183 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 1.3e-21 109.4 355 32.4
PRCOL_00004312 Prasinoderma coloniale HOM05D003406 ORTHO05D004026 2.1e-21 108.6 548 36.5
SMO231G0014 Selaginella moellendorffii HOM05D003406 ORTHO05D004026 2.1e-21 108.6 109 51.4
Cre06.g251951 Chlamydomonas reinhardtii HOM05D003406 ORTHO05D004026 1.4e-20 105.9 384 30.5
Haze_26561 Corylus avellana HOM05D003406 ORTHO05D004026 2.6e-19 101.7 78 55.1
SEGI_28398 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 5.5e-17 94.0 62 69.4
Aqoxy2G01592 Aquilegia oxysepala HOM05D003406 ORTHO05D004026 7.2e-17 93.6 124 46.0
SEGI_34701 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 7.2e-17 93.6 53 73.6
BcaC05g28071 Brassica carinata HOM05D003406 ORTHO05D004026 3.6e-16 91.3 56 78.6
arahy.Tifrunner.gnm1.ann1.JYS69T Arachis hypogaea HOM05D003406 ORTHO05D004026 1.9e-14 85.5 67 64.2
C07p49630 Brassica napus HOM05D003406 ORTHO05D004026 2.5e-14 85.1 92 53.3
C03p43350 Brassica napus HOM05D003406 ORTHO05D004026 2.8e-13 81.6 47 83.0
BolC3t16605H Brassica oleracea HOM05D003406 ORTHO05D004026 2.8e-13 81.6 47 83.0
TPR.G20465 Trifolium pratense HOM05D003406 ORTHO05D004026 2.8e-13 81.6 53 79.2
FAN06G0645 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.7e-13 81.3 54 66.7
FAN09G3514 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.7e-13 81.3 54 66.7
FAN11G1841 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.7e-13 81.3 54 66.7
FAN16G0070 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.7e-13 81.3 54 66.7
FAN16G0123 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.7e-13 81.3 54 66.7
FAN23G2758 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.7e-13 81.3 54 66.7
FAN27G1752 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.7e-13 81.3 54 66.7
FAN19G1643 Fragaria x ananassa HOM05D003406 ORTHO05D004026 8.2e-13 80.1 54 64.8
AUR62037193 Chenopodium quinoa HOM05D003406 ORTHO05D015410 4.1e-12 77.8 151 31.1
Gohir.D10G058700 Gossypium hirsutum HOM05D003406 ORTHO05D004026 7.7e-11 73.6 49 75.5
Gorai.011G062800 Gossypium raimondii HOM05D003406 ORTHO05D004026 1.3e-10 72.8 45 75.6
PSO170G3342 Papaver somniferum HOM05D002729 ORTHO05D305508 2.2e-10 72.0 110 43.6
PSO063G4288 Papaver somniferum HOM05D002729 ORTHO05D305335 3.8e-10 71.2 110 43.6
FAN11G4032 Fragaria x ananassa HOM05D003406 ORTHO05D004026 8.5e-10 70.1 75 58.7
FAN14G3483 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.4e-09 69.3 75 58.7
Aa31LG8G12390 Aethionema arabicum HOM05D003406 ORTHO05D030983 1.8e-07 62.4 72 41.7
C05p40950 Brassica napus HOM05D003406 ORTHO05D004026 5.1e-07 60.8 39 74.4
FAN19G2649 Fragaria x ananassa HOM05D003406 ORTHO05D004026 8.8e-07 60.1 38 68.4


User provided reference genes

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