Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G263200 Populus trichocarpa HOM05D005164 ORTHO05D006398 7.0e-218 760.4 398 100.0
Potri.014G180800 Populus trichocarpa HOM05D005164 ORTHO05D006398 1.3e-208 729.6 398 95.7
COL.COLO4_26343 Corchorus olitorius HOM05D005164 ORTHO05D006398 7.3e-207 723.8 398 94.5
Thecc.08G024200 Theobroma cacao HOM05D005164 ORTHO05D006398 7.3e-207 723.8 398 94.2
Duzib041G0411 Durio zibethinus HOM05D005164 ORTHO05D006398 1.4e-205 719.5 398 93.5
Gohir.A03G078200 Gossypium hirsutum HOM05D005164 ORTHO05D006398 1.8e-205 719.2 398 93.7
Gohir.D02G094300 Gossypium hirsutum HOM05D005164 ORTHO05D006398 5.2e-205 717.6 398 93.5
Gorai.005G107200 Gossypium raimondii HOM05D005164 ORTHO05D006398 5.2e-205 717.6 398 93.5
Ciclev10001386m.g Citrus clementina HOM05D005164 ORTHO05D006398 2.0e-204 715.7 398 93.7
Manes.18G028500 Manihot esculenta HOM05D005164 ORTHO05D006398 4.4e-204 714.5 398 93.7
QL02p007897 Quercus lobata HOM05D005164 ORTHO05D006398 7.5e-204 713.8 397 92.9
CiPaw.16G055400 Carya illinoinensis HOM05D005164 ORTHO05D006398 9.9e-204 713.4 398 92.5
CiPaw.15G075600 Carya illinoinensis HOM05D005164 ORTHO05D006398 1.7e-203 712.6 398 92.5
TWI56G0324 Tripterygium wilfordii HOM05D005164 ORTHO05D006398 2.2e-203 712.2 398 93.2
Cfa018135 Carpinus fangiana HOM05D005164 ORTHO05D006398 1.4e-202 709.5 398 92.2
Eucgr.F01909 Eucalyptus grandis HOM05D005164 ORTHO05D006398 2.4e-202 708.8 398 92.5
Dinv36062 Davidia involucrata HOM05D005164 ORTHO05D006398 3.2e-202 708.4 398 93.0
GSVIVG01009684001 Vitis vinifera HOM05D005164 ORTHO05D006398 9.2e-202 706.8 398 92.7
Ca_25003_v3 Cicer arietinum L. HOM05D005164 ORTHO05D006398 1.6e-201 706.1 398 91.7
Glyma.09G231100 Glycine max HOM05D005164 ORTHO05D006398 2.1e-201 705.7 398 92.2
RcHm_v2.0_Chr6g0300751 Rosa chinensis HOM05D005164 ORTHO05D006398 2.7e-201 705.3 398 91.7
Glyma.12G005400 Glycine max HOM05D005164 ORTHO05D006398 6.0e-201 704.1 398 92.0
Phvul.011G006200 Phaseolus vulgaris HOM05D005164 ORTHO05D006398 1.7e-200 702.6 398 92.0
Gohir.A05G260000 Gossypium hirsutum HOM05D005164 ORTHO05D006398 2.3e-200 702.2 398 92.0
VMungo1127G0366 Vigna mungo HOM05D005164 ORTHO05D006398 2.3e-200 702.2 398 92.0
Lj4C784T1 Lonicera japonica HOM05D005164 ORTHO05D006398 3.0e-200 701.8 398 91.7
HanXRQChr02g0040181 Helianthus annuus HOM05D005164 ORTHO05D006398 5.1e-200 701.0 398 91.2
Lj3g0003260 Lotus japonicus HOM05D005164 ORTHO05D006398 8.6e-200 700.3 398 91.2
Gorai.002G128900 Gossypium raimondii HOM05D005164 ORTHO05D006398 1.1e-199 699.9 398 89.7
CANSAT64G0480 Cannabis sativa HOM05D005164 ORTHO05D006398 1.5e-199 699.5 398 91.5
Gohir.D01G104900 Gossypium hirsutum HOM05D005164 ORTHO05D006398 5.6e-199 697.6 398 89.7
Lsat_1_v5_gn_1_17561 Lactuca sativa HOM05D005164 ORTHO05D006398 9.5e-199 696.8 398 90.7
MELO3C003848.2 Cucumis melo HOM05D005164 ORTHO05D006398 1.2e-198 696.4 398 91.0
CsaV3_3G045000 Cucumis sativus L. HOM05D005164 ORTHO05D006398 1.2e-198 696.4 398 91.0
Gohir.D05G261900 Gossypium hirsutum HOM05D005164 ORTHO05D006398 1.2e-198 696.4 398 91.5
TAR376G0296 Trochodendron aralioides HOM05D005164 ORTHO05D006398 1.6e-198 696.0 398 91.5
Gohir.A01G116500 Gossypium hirsutum HOM05D005164 ORTHO05D006398 2.1e-198 695.7 398 89.7
Medtr0173s0030 Medicago truncatula HOM05D005164 ORTHO05D006398 2.1e-198 695.7 398 90.7
Nn5g29540 Nelumbo nucifera HOM05D005164 ORTHO05D006398 2.8e-198 695.3 398 90.7
DCAR_019523 Daucus carota HOM05D005164 ORTHO05D006398 4.7e-198 694.5 398 90.7
Psat3g167280 Pisum sativum HOM05D005164 ORTHO05D006398 6.2e-198 694.1 398 90.5
Sc02g0006310 Simmondsia chinensis HOM05D005164 ORTHO05D006398 6.2e-198 694.1 398 90.5
CANSAT25G0119 Cannabis sativa HOM05D005164 ORTHO05D006398 8.1e-198 693.7 403 90.1
Gorai.009G273800 Gossypium raimondii HOM05D005164 ORTHO05D006398 3.1e-197 691.8 401 90.8
ECA247G1488 Erigeron canadensis HOM05D005164 ORTHO05D006398 5.2e-197 691.0 398 90.7
EL10Ac8g20456 Beta vulgaris HOM05D005164 ORTHO05D006398 1.5e-196 689.5 398 89.4
PGR031G3751 Punica granatum HOM05D005164 ORTHO05D006398 1.5e-196 689.5 398 90.2
Sed0021376 Sechium edule HOM05D005164 ORTHO05D006398 1.5e-196 689.5 398 89.9
FvH4_2g40000 Fragaria vesca HOM05D005164 ORTHO05D006398 3.4e-196 688.3 399 89.7
FAN27G0257 Fragaria x ananassa HOM05D005164 ORTHO05D006398 3.4e-196 688.3 399 89.7
Sed0001534 Sechium edule HOM05D005164 ORTHO05D006398 3.4e-196 688.3 399 90.2
SalBow8G2733 Salvia bowleyana HOM05D005164 ORTHO05D006398 4.4e-196 688.0 398 89.7
FAN15G2586 Fragaria x ananassa HOM05D005164 ORTHO05D006398 9.9e-196 686.8 399 89.5
Solyc04g080160.3 Solanum lycopersicum HOM05D005164 ORTHO05D006398 1.7e-195 686.0 398 89.2
Sopen04g033750 Solanum pennellii HOM05D005164 ORTHO05D006398 1.7e-195 686.0 398 89.2
MSTRG.24294 Avicennia marina HOM05D005164 ORTHO05D006398 2.2e-195 685.6 398 89.7
Cc10_g03080 Coffea canephora HOM05D005164 ORTHO05D006398 2.9e-195 685.3 398 89.9
PGSC0003DMG400005163 Solanum tuberosum HOM05D005164 ORTHO05D006398 4.9e-195 684.5 398 88.9
Peaxi162Scf00690g00117 Petunia axillaris HOM05D005164 ORTHO05D006398 1.9e-194 682.6 398 89.7
FAN20G1227 Fragaria x ananassa HOM05D005164 ORTHO05D006398 3.2e-194 681.8 399 88.7
Aqoxy6G01049 Aquilegia oxysepala HOM05D005164 ORTHO05D006398 4.2e-194 681.4 398 87.9
ATR0733G076 Amborella trichopoda HOM05D005164 ORTHO05D006398 1.2e-193 679.9 398 88.2
THA.LOC104822841 Tarenaya hassleriana HOM05D005164 ORTHO05D006398 6.0e-193 677.6 398 88.4
MD08G1033300 Malus domestica HOM05D005164 ORTHO05D006398 1.7e-192 676.0 398 87.7
AUR62014895 Chenopodium quinoa HOM05D005164 ORTHO05D006398 2.3e-192 675.6 398 88.2
Hund21200 Selenicereus undatus HOM05D005164 ORTHO05D006398 3.0e-192 675.2 398 88.7
THA.LOC104814156 Tarenaya hassleriana HOM05D005164 ORTHO05D006398 8.7e-192 673.7 399 88.2
CDE02G4403 Ceratophyllum demersum HOM05D005164 ORTHO05D006398 1.5e-191 672.9 398 87.4
Migut.N00498 Erythranthe guttata HOM05D005164 ORTHO05D006398 8.1e-190 667.2 398 87.2
MD15G1029900 Malus domestica HOM05D005164 ORTHO05D006398 8.1e-190 667.2 406 85.5
CAN.G1126.40 Capsicum annuum HOM05D005164 ORTHO05D006398 1.1e-189 666.8 398 87.2
Sabra14G0141000 Salix brachista HOM05D005164 ORTHO05D006398 1.4e-189 666.4 437 83.5
Haze_17990 Corylus avellana HOM05D005164 ORTHO05D006398 2.0e-188 662.5 501 73.5
ClCG05G019140 Citrullus lanatus HOM05D005164 ORTHO05D006398 2.9e-187 658.7 398 87.4
Os03g0197400 Oryza sativa ssp. japonica HOM05D005164 ORTHO05D006398 4.9e-187 657.9 400 84.8
CDE01G0241 Ceratophyllum demersum HOM05D005164 ORTHO05D006398 1.1e-186 656.8 402 85.8
Hma1.2p1_0023F.1_g014900 Hydrangea macrophylla HOM05D005164 ORTHO05D006398 1.1e-186 656.8 490 74.7
AT5G42970 Arabidopsis thaliana HOM05D005164 ORTHO05D006398 2.4e-186 655.6 398 85.4
Carub.0008s0578 Capsella rubella HOM05D005164 ORTHO05D006398 5.4e-186 654.4 398 84.9
AUR62031100 Chenopodium quinoa HOM05D005164 ORTHO05D006398 2.1e-185 652.5 398 85.9
Sp2g07720 Schrenkiella parvula HOM05D005164 ORTHO05D006398 2.1e-185 652.5 398 84.9
Prupe.1G381600 Prunus persica HOM05D005164 ORTHO05D006398 2.7e-185 652.1 398 86.7
BcaC06g31734 Brassica carinata HOM05D005164 ORTHO05D006398 1.3e-184 649.8 398 84.7
CARHR181050 Cardamine hirsuta HOM05D005164 ORTHO05D006398 3.0e-184 648.7 398 84.7
Thhalv10003436m.g Eutrema salsugineum HOM05D005164 ORTHO05D006398 6.6e-184 647.5 398 84.9
A06p48120 Brassica napus HOM05D005164 ORTHO05D006398 8.7e-184 647.1 398 84.2
BraA06t27681Z Brassica rapa HOM05D005164 ORTHO05D006398 8.7e-184 647.1 398 84.2
Aa31LG9G13090 Aethionema arabicum HOM05D005164 ORTHO05D006398 1.5e-183 646.4 398 85.4
A02p27610 Brassica napus HOM05D005164 ORTHO05D006398 1.9e-183 646.0 398 84.4
BolC2t10406H Brassica oleracea HOM05D005164 ORTHO05D006398 1.9e-183 646.0 398 84.4
BraA02t07794Z Brassica rapa HOM05D005164 ORTHO05D006398 1.9e-183 646.0 398 84.4
AL8G17800 Arabidopsis lyrata HOM05D005164 ORTHO05D006398 2.5e-183 645.6 398 84.4
BcaB07g30597 Brassica carinata HOM05D005164 ORTHO05D006398 7.3e-183 644.0 398 83.9
BcaC02g10785 Brassica carinata HOM05D005164 ORTHO05D006398 7.3e-183 644.0 398 83.9
C04p25110 Brassica napus HOM05D005164 ORTHO05D006398 7.3e-183 644.0 398 83.9
BolC4t24015H Brassica oleracea HOM05D005164 ORTHO05D006398 7.3e-183 644.0 398 83.9
BcaC03g16546 Brassica carinata HOM05D005164 ORTHO05D006398 9.6e-183 643.7 398 84.2
C02p43640 Brassica napus HOM05D005164 ORTHO05D006398 9.6e-183 643.7 398 84.2
unitig_22.g6774 Utricularia gibba HOM05D005164 ORTHO05D006398 1.3e-182 643.3 399 84.5
Oeu009868.2 Olea europaea HOM05D005164 ORTHO05D006398 2.1e-182 642.5 477 74.0
Rhsim06G0035000 Rhododendron simsii HOM05D005164 ORTHO05D006398 4.0e-181 638.3 418 82.3
Hma1.2p1_0469F.1_g159190 Hydrangea macrophylla HOM05D005164 ORTHO05D006398 4.5e-180 634.8 439 79.7
Zm00001eb008060 Zea mays HOM05D005164 ORTHO05D006398 4.5e-180 634.8 440 76.4
Nitab4.5_0000110g0500 Nicotiana tabacum HOM05D005164 ORTHO05D006398 1.3e-179 633.3 398 83.9
PSO675G3600 Papaver somniferum HOM05D005164 ORTHO05D006398 6.4e-179 630.9 398 81.4
PSO541G6137 Papaver somniferum HOM05D005164 ORTHO05D006398 2.4e-178 629.0 398 80.9
Atru.chr13.515 Acer truncatum HOM05D005164 ORTHO05D006398 9.3e-178 627.1 354 92.4
Manes.05G161900 Manihot esculenta HOM05D005164 ORTHO05D006398 1.3e-176 623.2 354 90.7
SGA_v2.0_scaffold326G48708 Striga asiatica HOM05D005164 ORTHO05D006398 1.3e-176 623.2 355 90.7
Nitab4.5_0010187g0010 Nicotiana tabacum HOM05D005164 ORTHO05D006398 1.8e-176 622.9 398 82.9
Actinidia22558 Actinidia chinensis HOM05D005164 ORTHO05D006398 3.9e-176 621.7 368 88.9
MBI17_g39721_MAGBIO Magnolia biondii HOM05D005164 ORTHO05D006398 4.8e-174 614.8 431 78.4
Mapoly0072s0034 Marchantia polymorpha HOM05D005164 ORTHO05D006398 9.0e-173 610.5 398 77.9
TPR.G3648 Trifolium pratense HOM05D005164 ORTHO05D006398 2.1e-169 599.4 387 82.9
Pp3c5_28450 Physcomitrium patens HOM05D005164 ORTHO05D006398 3.3e-167 592.0 398 75.6
AagrBONN_evm.TU.Sc2ySwM_117.2514 Anthoceros agrestis HOM05D005164 ORTHO05D006398 3.1e-165 585.5 397 74.3
SMO364G0673 Selaginella moellendorffii HOM05D005164 ORTHO05D006398 2.5e-162 575.9 398 73.1
vmacro21627 Vaccinium macrocarpon HOM05D005164 ORTHO05D006398 5.3e-157 558.1 398 77.1
Duzib093G0265 Durio zibethinus HOM05D005164 ORTHO05D006398 5.0e-155 551.6 398 75.9
CBR_g36268 Chara braunii HOM05D005164 ORTHO05D006398 7.9e-145 517.7 386 69.2
HPP92_024905 Vanilla planifolia HOM05D005164 ORTHO05D006398 1.4e-141 506.9 347 76.9
Actinidia15313 Actinidia chinensis HOM05D005164 ORTHO05D006398 5.3e-141 505.0 423 68.8
CSS0020238 Camellia sinensis var. sinensis HOM05D005164 ORTHO05D006398 3.8e-139 498.8 271 94.8
CAN.G416.53 Capsicum annuum HOM05D005164 ORTHO05D006398 1.2e-124 450.7 312 77.6
RcHm_v2.0_Chr2g0166611 Rosa chinensis HOM05D005164 ORTHO05D006398 2.6e-111 406.4 226 92.9
Cre11.g478240 Chlamydomonas reinhardtii HOM05D005164 ORTHO05D006398 5.4e-109 398.7 391 53.7
Cpa.g.sc64.68 Carica papaya HOM05D005164 ORTHO05D006398 7.5e-103 378.3 216 92.1
MCO16G668 Micromonas commoda HOM05D005164 ORTHO05D006398 9.8e-103 377.9 402 50.2
PRCOL_00006114 Prasinoderma coloniale HOM05D005164 ORTHO05D006398 1.2e-87 327.8 401 47.1
SEGI_27147 Sequoiadendron giganteum HOM05D005164 ORTHO05D006398 2.7e-84 316.6 213 77.0
Sopen04g033730 Solanum pennellii HOM05D005164 ORTHO05D006398 9.6e-82 308.1 214 75.7
GSVIVG01023193001 Vitis vinifera HOM05D005164 ORTHO05D006398 7.9e-68 261.9 150 91.3
GSVIVG01003780001 Vitis vinifera HOM05D005164 ORTHO05D006398 3.9e-67 259.6 150 90.0
Cfa024373 Carpinus fangiana HOM05D005164 ORTHO05D006398 1.5e-58 231.1 319 42.0
MBI17_g35116_MAGBIO Magnolia biondii HOM05D005164 ORTHO05D006398 3.1e-56 223.4 183 70.5
Carub.0004s0266 Capsella rubella HOM05D005164 ORTHO05D006398 9.6e-50 201.8 146 71.2
arahy.Tifrunner.gnm1.ann1.ABX6XB Arachis hypogaea HOM05D005164 ORTHO05D006398 6.7e-43 179.1 243 51.4
Haze_26904 Corylus avellana HOM05D005164 ORTHO05D006398 5.3e-40 169.5 205 44.9
arahy.Tifrunner.gnm1.ann1.D3INNH Arachis hypogaea HOM05D005164 ORTHO05D006398 6.5e-38 162.5 95 88.4
arahy.Tifrunner.gnm1.ann1.R33BY8 Arachis hypogaea HOM05D005164 ORTHO05D006398 6.5e-38 162.5 95 88.4
arahy.Tifrunner.gnm1.ann1.ZV61IE Arachis hypogaea HOM05D005164 ORTHO05D006398 1.6e-15 88.2 65 73.8
TPR.G136 Trifolium pratense HOM05D005164 ORTHO05D006398 1.6e-15 88.2 46 89.1
arahy.Tifrunner.gnm1.ann1.2K5AT5 Arachis hypogaea HOM05D005164 ORTHO05D006398 7.5e-10 69.3 41 82.9
Lalb_Chr07g0184681 Lupinus albus HOM05D001185 ORTHO05D003777 3.5e-07 60.5 329 23.4
ECA240G1489 Erigeron canadensis HOM05D001185 ORTHO05D003777 4.5e-07 60.1 331 23.6
Sp6g33510 Schrenkiella parvula HOM05D001185 ORTHO05D003777 4.5e-07 60.1 330 24.2
BolC3t13011H Brassica oleracea HOM05D001185 ORTHO05D003777 1.0e-06 58.9 330 24.8
PSO170G5175 Papaver somniferum HOM05D001185 ORTHO05D003777 1.0e-06 58.9 330 23.9
Carub.0006s0834 Capsella rubella HOM05D001185 ORTHO05D003777 1.7e-06 58.2 330 24.5
CARHR203440 Cardamine hirsuta HOM05D001185 ORTHO05D003777 1.7e-06 58.2 330 24.8
Thhalv10013557m.g Eutrema salsugineum HOM05D001185 ORTHO05D003777 1.7e-06 58.2 330 25.2
Lj4g0024278 Lotus japonicus HOM05D001185 ORTHO05D003777 2.2e-06 57.8 329 23.7
AT5G09900 Arabidopsis thaliana HOM05D001185 ORTHO05D003777 2.9e-06 57.4 330 24.5
A02p00220 Brassica napus HOM05D001185 ORTHO05D003777 2.9e-06 57.4 330 24.5
A03p04320 Brassica napus HOM05D001185 ORTHO05D003777 2.9e-06 57.4 330 24.5
C02p04140 Brassica napus HOM05D001185 ORTHO05D003777 2.9e-06 57.4 330 24.5
BolC2t06376H Brassica oleracea HOM05D001185 ORTHO05D003777 2.9e-06 57.4 330 24.5
PSO700G0370 Papaver somniferum HOM05D001185 ORTHO05D003777 2.9e-06 57.4 330 23.9
TWI31G0616 Tripterygium wilfordii HOM05D001185 ORTHO05D003777 2.9e-06 57.4 403 22.8
Sed0017410 Sechium edule HOM05D001185 ORTHO05D003777 3.8e-06 57.0 331 22.1
Sed0021912 Sechium edule HOM05D001185 ORTHO05D003777 3.8e-06 57.0 330 22.4
BcaC03g13283 Brassica carinata HOM05D001185 ORTHO05D003777 5.0e-06 56.6 330 24.5
Lj2A569G64 Lonicera japonica HOM05D001185 ORTHO05D003777 5.0e-06 56.6 333 22.8
AL6G20320 Arabidopsis lyrata HOM05D001185 ORTHO05D003777 6.5e-06 56.2 330 24.2
BcaB01g05557 Brassica carinata HOM05D001185 ORTHO05D003777 6.5e-06 56.2 330 24.2
BcaB05g21522 Brassica carinata HOM05D001185 ORTHO05D003777 6.5e-06 56.2 330 23.3
C03p04770 Brassica napus HOM05D001185 ORTHO05D003777 6.5e-06 56.2 330 24.2
BraA03t09776Z Brassica rapa HOM05D001185 ORTHO05D003777 6.5e-06 56.2 330 24.2
Thecc.05G196500 Theobroma cacao HOM05D001185 ORTHO05D003777 6.5e-06 56.2 330 23.9
CANSAT01G1300 Cannabis sativa HOM05D001185 ORTHO05D003777 8.5e-06 55.8 334 22.8
Carub.0008s2557 Capsella rubella HOM05D001185 ORTHO05D003777 8.5e-06 55.8 330 23.0
Ca_17672_v3 Cicer arietinum L. HOM05D001185 ORTHO05D003777 8.5e-06 55.8 329 23.7


User provided reference genes

Program Settings