Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G136500 Populus trichocarpa HOM05D005128 ORTHO05D006227 1.1e-72 276.6 138 100.0
Potri.014G045200 Populus trichocarpa HOM05D005128 ORTHO05D006227 1.9e-69 265.8 138 94.9
ClCG11G006910 Citrullus lanatus HOM05D005128 ORTHO05D006227 2.0e-63 245.7 138 88.4
Nn6g33850 Nelumbo nucifera HOM05D005128 ORTHO05D006227 5.9e-63 244.2 138 87.0
GSVIVG01018248001 Vitis vinifera HOM05D005128 ORTHO05D006227 5.9e-63 244.2 138 87.7
TWI14G0708 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 1.0e-62 243.4 138 88.4
TWI14G1050 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 1.0e-62 243.4 138 88.4
vmacro13485 Vaccinium macrocarpon HOM05D005128 ORTHO05D006227 1.0e-62 243.4 138 87.7
COL.COLO4_12428 Corchorus olitorius HOM05D005128 ORTHO05D006227 1.3e-62 243.0 138 87.7
Thecc.01G392500 Theobroma cacao HOM05D005128 ORTHO05D006227 2.2e-62 242.3 138 87.7
Duzib138G0976 Durio zibethinus HOM05D005128 ORTHO05D006227 3.8e-62 241.5 138 87.0
PGR042G1446 Punica granatum HOM05D005128 ORTHO05D006227 3.8e-62 241.5 138 86.2
MELO3C008212.2 Cucumis melo HOM05D005128 ORTHO05D006227 5.0e-62 241.1 138 87.0
Actinidia40389 Actinidia chinensis HOM05D005128 ORTHO05D006227 6.5e-62 240.7 138 86.2
CSS0048126 Camellia sinensis var. sinensis HOM05D005128 ORTHO05D006227 1.4e-61 239.6 138 88.4
Ciclev10029559m.g Citrus clementina HOM05D005128 ORTHO05D006227 1.4e-61 239.6 138 86.2
TAR374G1117 Trochodendron aralioides HOM05D005128 ORTHO05D006227 1.4e-61 239.6 138 86.2
CsaV3_6G001140 Cucumis sativus L. HOM05D005128 ORTHO05D006227 2.5e-61 238.8 138 87.0
Eucgr.E01576 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.5e-61 238.8 138 85.5
Lsat_1_v5_gn_4_46700 Lactuca sativa HOM05D005128 ORTHO05D006227 2.5e-61 238.8 134 88.1
Prupe.2G127400 Prunus persica HOM05D005128 ORTHO05D006227 2.5e-61 238.8 138 86.2
Nitab4.5_0002874g0020 Nicotiana tabacum HOM05D005128 ORTHO05D006227 3.2e-61 238.4 133 89.5
Nitab4.5_0003553g0110 Nicotiana tabacum HOM05D005128 ORTHO05D006227 3.2e-61 238.4 133 89.5
Peaxi162Scf00030g00515 Petunia axillaris HOM05D005128 ORTHO05D006227 3.2e-61 238.4 133 88.7
Sed0016496 Sechium edule HOM05D005128 ORTHO05D006227 3.2e-61 238.4 133 88.0
CiPaw.13G027900 Carya illinoinensis HOM05D005128 ORTHO05D006227 4.2e-61 238.0 138 86.2
Cc02_g24910 Coffea canephora HOM05D005128 ORTHO05D006227 4.2e-61 238.0 133 88.7
Manes.01G272200 Manihot esculenta HOM05D005128 ORTHO05D006227 4.2e-61 238.0 138 85.5
HanXRQChr05g0138471 Helianthus annuus HOM05D005128 ORTHO05D006227 7.2e-61 237.3 134 87.3
Solyc01g090450.3 Solanum lycopersicum HOM05D005128 ORTHO05D006227 7.2e-61 237.3 133 88.7
Atru.chr5.161 Acer truncatum HOM05D005128 ORTHO05D006227 9.4e-61 236.9 136 86.8
Cfa011089 Carpinus fangiana HOM05D005128 ORTHO05D006227 9.4e-61 236.9 138 86.2
ECA234G3101 Erigeron canadensis HOM05D005128 ORTHO05D006227 9.4e-61 236.9 134 86.6
MBI04_g34109_MAGBIO Magnolia biondii HOM05D005128 ORTHO05D006227 1.2e-60 236.5 131 87.8
CAN.G362.11 Capsicum annuum HOM05D005128 ORTHO05D006227 1.6e-60 236.1 133 87.2
FvH4_7g09830 Fragaria vesca HOM05D005128 ORTHO05D006227 2.7e-60 235.3 133 87.2
FAN03G0006 Fragaria x ananassa HOM05D005128 ORTHO05D006227 2.7e-60 235.3 133 87.2
FAN10G0506 Fragaria x ananassa HOM05D005128 ORTHO05D006227 2.7e-60 235.3 133 87.2
RcHm_v2.0_Chr1g0346991 Rosa chinensis HOM05D005128 ORTHO05D006227 2.7e-60 235.3 133 87.2
Sopen01g036240 Solanum pennellii HOM05D005128 ORTHO05D006227 3.6e-60 235.0 133 88.0
Cpa.g.sc101.28 Carica papaya HOM05D005128 ORTHO05D006227 6.1e-60 234.2 138 83.3
FAN10G2714 Fragaria x ananassa HOM05D005128 ORTHO05D006227 6.1e-60 234.2 133 86.5
FAN06G2910 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.0e-59 233.4 131 87.0
QL04p030930 Quercus lobata HOM05D005128 ORTHO05D006227 1.0e-59 233.4 137 85.4
TWI59G1443 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 1.0e-59 233.4 128 88.3
Gohir.D12G099300 Gossypium hirsutum HOM05D005128 ORTHO05D006227 1.8e-59 232.6 138 84.8
Gorai.008G108000 Gossypium raimondii HOM05D005128 ORTHO05D006227 1.8e-59 232.6 138 84.8
PSO782G3280 Papaver somniferum HOM05D005128 ORTHO05D006227 1.8e-59 232.6 128 89.1
FAN06G2047 Fragaria x ananassa HOM05D005128 ORTHO05D006227 3.0e-59 231.9 133 86.5
SGA_v2.0_scaffold52G19215 Striga asiatica HOM05D005128 ORTHO05D006227 3.0e-59 231.9 123 91.1
Migut.B01551 Erythranthe guttata HOM05D005128 ORTHO05D006227 5.1e-59 231.1 133 85.7
ATR0057G123 Amborella trichopoda HOM05D005128 ORTHO05D006227 6.7e-59 230.7 138 82.6
MSTRG.20701 Avicennia marina HOM05D005128 ORTHO05D006227 1.1e-58 229.9 131 86.3
MD02G1216700 Malus domestica HOM05D005128 ORTHO05D006227 1.5e-58 229.6 138 84.1
PSO063G1454 Papaver somniferum HOM05D005128 ORTHO05D006227 1.5e-58 229.6 128 88.3
Aqoxy3G02773 Aquilegia oxysepala HOM05D005128 ORTHO05D006227 2.6e-58 228.8 123 88.6
Migut.A00726 Erythranthe guttata HOM05D005128 ORTHO05D006227 3.3e-58 228.4 131 86.3
Zm00001eb201920 Zea mays HOM05D005128 ORTHO05D006227 3.3e-58 228.4 123 89.4
Gohir.A12G096500 Gossypium hirsutum HOM05D005128 ORTHO05D006227 4.4e-58 228.0 138 82.6
Sp2g28380 Schrenkiella parvula HOM05D005128 ORTHO05D006227 5.7e-58 227.6 138 82.6
Manes.05G053000 Manihot esculenta HOM05D005128 ORTHO05D006227 7.4e-58 227.3 133 85.0
Thhalv10005116m.g Eutrema salsugineum HOM05D005128 ORTHO05D006227 1.7e-57 226.1 138 81.9
THA.LOC104814071 Tarenaya hassleriana HOM05D005128 ORTHO05D006227 2.8e-57 225.3 138 81.2
Os11g0557900 Oryza sativa ssp. japonica HOM05D005128 ORTHO05D006227 3.7e-57 224.9 123 87.0
unitig_0.g1324 Utricularia gibba HOM05D005128 ORTHO05D006227 3.7e-57 224.9 133 83.5
Aa31LG5G70 Aethionema arabicum HOM05D005128 ORTHO05D006227 8.2e-57 223.8 138 81.2
A06p32130 Brassica napus HOM05D005128 ORTHO05D006227 1.8e-56 222.6 138 80.4
BolC3t18340H Brassica oleracea HOM05D005128 ORTHO05D006227 1.8e-56 222.6 138 80.4
BraA06t26141Z Brassica rapa HOM05D005128 ORTHO05D006227 1.8e-56 222.6 138 80.4
C03p60810 Brassica napus HOM05D005128 ORTHO05D006227 4.1e-56 221.5 138 79.7
CARHR248040 Cardamine hirsuta HOM05D005128 ORTHO05D006227 4.1e-56 221.5 133 83.5
CDE11G0478 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 4.1e-56 221.5 123 84.6
Carub.0006s3721 Capsella rubella HOM05D005128 ORTHO05D006227 5.3e-56 221.1 133 82.7
AT4G01710 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 7.0e-56 220.7 133 82.7
AL6G53500 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 9.1e-56 220.3 133 82.0
HanXRQChr16g0520301 Helianthus annuus HOM05D005128 ORTHO05D006227 9.1e-56 220.3 125 84.0
Lj3g0015662 Lotus japonicus HOM05D005128 ORTHO05D006227 1.2e-55 219.9 138 81.2
Hund11691 Selenicereus undatus HOM05D005128 ORTHO05D006227 1.2e-55 219.9 138 79.7
FAN03G2425 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.5e-55 219.5 156 73.1
AUR62023426 Chenopodium quinoa HOM05D005128 ORTHO05D006227 2.0e-55 219.2 138 78.3
Medtr8g006725 Medicago truncatula HOM05D005128 ORTHO05D006227 5.9e-55 217.6 138 79.7
EL10Ac1g00782 Beta vulgaris HOM05D005128 ORTHO05D006227 1.0e-54 216.9 138 77.5
AUR62013728 Chenopodium quinoa HOM05D005128 ORTHO05D006227 1.0e-54 216.9 138 76.8
Ca_14055_v3 Cicer arietinum L. HOM05D005128 ORTHO05D006227 1.3e-54 216.5 138 79.0
Medtr1g112900 Medicago truncatula HOM05D005128 ORTHO05D006227 1.3e-54 216.5 138 79.0
Glyma.07G112500 Glycine max HOM05D005128 ORTHO05D006227 1.7e-54 216.1 138 79.0
VMungo0331G0261 Vigna mungo HOM05D005128 ORTHO05D006227 1.7e-54 216.1 138 79.0
Lalb_Chr13g0304581 Lupinus albus HOM05D005128 ORTHO05D006227 3.8e-54 214.9 136 77.9
Psat0s118g0040 Pisum sativum HOM05D005128 ORTHO05D006227 3.8e-54 214.9 138 79.0
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 5.0e-54 214.5 128 79.7
Lalb_Chr07g0195501 Lupinus albus HOM05D005128 ORTHO05D006227 1.1e-53 213.4 133 78.9
TPR.G33121 Trifolium pratense HOM05D005128 ORTHO05D006227 1.5e-53 213.0 138 79.0
Phvul.010G052100 Phaseolus vulgaris HOM05D005128 ORTHO05D006227 1.9e-53 212.6 138 78.3
Nn1g00897 Nelumbo nucifera HOM05D005128 ORTHO05D006227 2.5e-53 212.2 138 76.1
Glyma.03G114200 Glycine max HOM05D005128 ORTHO05D006227 7.2e-53 210.7 138 77.5
PGSC0003DMG400026042 Solanum tuberosum HOM05D005128 ORTHO05D006227 2.7e-52 208.8 186 62.4
AT5G65274 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 2.6e-50 202.2 138 72.5
Carub.0008s2615 Capsella rubella HOM05D005128 ORTHO05D006227 2.6e-50 202.2 138 72.5
arahy.Tifrunner.gnm1.ann1.L9RWF4 Arachis hypogaea HOM05D005128 ORTHO05D006227 9.7e-50 200.3 170 64.7
arahy.Tifrunner.gnm1.ann1.V0IP08 Arachis hypogaea HOM05D005128 ORTHO05D006227 2.8e-49 198.7 170 64.1
Gohir.D11G020200 Gossypium hirsutum HOM05D005128 ORTHO05D006227 1.8e-48 196.1 138 71.7
Haze_02808 Corylus avellana HOM05D005128 ORTHO05D006227 3.5e-47 191.8 139 74.8
Gorai.007G021500 Gossypium raimondii HOM05D005128 ORTHO05D006227 7.7e-47 190.7 138 68.8
SMO203G0150 Selaginella moellendorffii HOM05D005128 ORTHO05D006227 1.0e-46 190.3 123 72.4
Gohir.A13G167950 Gossypium hirsutum HOM05D005128 ORTHO05D006227 1.3e-46 189.9 123 74.0
MD07G1103100 Malus domestica HOM05D005128 ORTHO05D006227 1.3e-46 189.9 138 73.2
Ah.05g173200 Amaranthus hybridus HOM05D005128 ORTHO05D006227 2.9e-46 188.7 202 53.5
AagrBONN_evm.TU.Sc2ySwM_369.249 Anthoceros agrestis HOM05D005128 ORTHO05D006227 1.5e-45 186.4 128 68.0
AL8G42840 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 5.5e-45 184.5 133 69.2
FAN01G3136 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.2e-44 183.3 133 72.9
Sc02g0003030 Simmondsia chinensis HOM05D005128 ORTHO05D006227 2.7e-44 182.2 104 79.8
Mapoly0006s0266 Marchantia polymorpha HOM05D005128 ORTHO05D006227 8.0e-44 180.6 133 65.4
AagrBONN_evm.TU.Sc2ySwM_369.256 Anthoceros agrestis HOM05D005128 ORTHO05D006227 1.4e-43 179.9 127 69.3
SEGI_29435 Sequoiadendron giganteum HOM05D005128 ORTHO05D006227 8.8e-43 177.2 127 67.7
SGA_v2.0_scaffold153G36917 Striga asiatica HOM05D005128 ORTHO05D006227 5.7e-42 174.5 123 74.0
Pp3c15_3940 Physcomitrium patens HOM05D005128 ORTHO05D006227 2.0e-39 166.0 128 62.5
CiPaw.14G021600 Carya illinoinensis HOM05D005128 ORTHO05D006227 6.5e-38 161.0 146 65.1
CDE02G2422 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 4.7e-36 154.8 79 88.6
Eucgr.L02413 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.3e-35 152.5 80 86.2
Dinv44074 Davidia involucrata HOM05D005128 ORTHO05D006227 2.0e-34 149.4 95 81.1
Eucgr.E00550 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.0e-34 149.4 99 75.8
Eucgr.E04335 Eucalyptus grandis HOM05D005128 ORTHO05D006227 5.7e-34 147.9 80 85.0
Nitab4.5_0029376g0010 Nicotiana tabacum HOM05D005128 ORTHO05D006227 1.3e-33 146.7 87 86.2
Oeu064660.1 Olea europaea HOM05D005128 ORTHO05D006227 1.7e-33 146.4 88 85.2
Sabra14G0033100 Salix brachista HOM05D005128 ORTHO05D006227 1.4e-32 143.3 71 94.4
SalBow7G0891 Salvia bowleyana HOM05D005128 ORTHO05D006227 2.4e-32 142.5 88 83.0
Eucgr.H02816 Eucalyptus grandis HOM05D005128 ORTHO05D006227 5.9e-31 137.9 75 84.0
SalBow5G0414 Salvia bowleyana HOM05D005128 ORTHO05D006227 5.9e-31 137.9 83 81.9
Sed0016493 Sechium edule HOM05D005128 ORTHO05D006227 8.6e-30 134.0 132 59.1
Eucgr.C04409 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.1e-29 133.7 94 72.3
Eucgr.E02797 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.1e-29 133.7 89 77.5
Eucgr.J01567 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.5e-29 132.5 68 88.2
Eucgr.J01375 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.2e-28 130.2 92 71.7
Lalb_Chr13g0304531 Lupinus albus HOM05D005128 ORTHO05D006227 2.8e-28 129.0 91 72.5
Lalb_Chr13g0304521 Lupinus albus HOM05D005128 ORTHO05D006227 6.1e-28 127.9 91 71.4
Lalb_Chr13g0304591 Lupinus albus HOM05D005128 ORTHO05D006227 6.1e-28 127.9 91 71.4
MD15G1416400 Malus domestica HOM05D005128 ORTHO05D006227 3.4e-26 122.1 107 64.5
Hund07697 Selenicereus undatus HOM05D005128 ORTHO05D006227 5.7e-26 121.3 87 73.6
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 4.6e-23 111.7 64 78.1
Hund17078 Selenicereus undatus HOM05D005128 ORTHO05D006227 1.8e-19 99.8 83 63.9
Lalb_Chr13g0304551 Lupinus albus HOM05D005128 ORTHO05D006227 4.9e-17 91.7 46 87.0
Gorai.002G193300 Gossypium raimondii HOM05D005128 ORTHO05D006227 1.4e-16 90.1 83 55.4
TPR.G6927 Trifolium pratense HOM05D005128 ORTHO05D006922 4.1e-16 88.6 45 84.4
Gohir.D01G155933 Gossypium hirsutum HOM05D005128 ORTHO05D006227 5.6e-13 78.2 73 53.4
MD07G1103500 Malus domestica HOM05D005128 ORTHO05D006227 9.5e-13 77.4 56 71.4
TPR.G6976 Trifolium pratense HOM05D005128 ORTHO05D006227 8.3e-09 64.3 41 68.3
BcaC03g18322 Brassica carinata HOM05D005128 ORTHO05D006227 3.2e-08 62.4 42 71.4


User provided reference genes

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