Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.L008700 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 5.2e-84 314.3 155 100.0
Phvul.001G010300 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 2.8e-82 308.5 155 98.7
Phvul.008G188200 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 2.8e-82 308.5 155 98.7
Phvul.003G000356 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 3.1e-81 305.1 155 98.1
VMungo0647G1380 Vigna mungo HOM05D005446 ORTHO05D006597 4.3e-70 268.1 147 89.8
Glyma.02G221100 Glycine max HOM05D005446 ORTHO05D006597 9.5e-70 266.9 155 83.9
Glyma.14G188600 Glycine max HOM05D005446 ORTHO05D006597 1.6e-69 266.2 155 83.9
Haze_00330 Corylus avellana HOM05D005446 ORTHO05D006597 6.0e-64 247.7 155 77.4
Cfa016130 Carpinus fangiana HOM05D005446 ORTHO05D006597 1.7e-63 246.1 155 76.8
Haze_23920 Corylus avellana HOM05D005446 ORTHO05D006597 2.3e-63 245.7 155 77.4
LjContig00155g0018941 Lotus japonicus HOM05D005446 ORTHO05D006597 1.5e-62 243.0 155 76.1
Thecc.04G200100 Theobroma cacao HOM05D005446 ORTHO05D006597 1.9e-62 242.7 155 72.3
Manes.18G108200 Manihot esculenta HOM05D005446 ORTHO05D006597 3.3e-62 241.9 155 74.8
COL.COLO4_20178 Corchorus olitorius HOM05D005446 ORTHO05D006597 4.3e-62 241.5 155 72.9
MBI12_g19204_MAGBIO Magnolia biondii HOM05D005446 ORTHO05D006597 1.2e-61 240.0 155 72.9
GSVIVG01038676001 Vitis vinifera HOM05D005446 ORTHO05D006597 1.6e-61 239.6 155 72.9
Atru.chr12.2505 Acer truncatum HOM05D005446 ORTHO05D006597 2.8e-61 238.8 155 74.8
Dinv17279 Davidia involucrata HOM05D005446 ORTHO05D006597 2.8e-61 238.8 155 74.2
Atru.chr12.2528 Acer truncatum HOM05D005446 ORTHO05D006597 6.2e-61 237.7 155 74.2
Lalb_Chr10g0102991 Lupinus albus HOM05D005446 ORTHO05D006597 8.1e-61 237.3 155 72.3
Potri.015G001200 Populus trichocarpa HOM05D005446 ORTHO05D006597 8.1e-61 237.3 155 74.8
Actinidia08718 Actinidia chinensis HOM05D005446 ORTHO05D006597 1.1e-60 236.9 155 74.2
TAR383G0718 Trochodendron aralioides HOM05D005446 ORTHO05D006597 1.1e-60 236.9 155 71.0
QL09p006048 Quercus lobata HOM05D005446 ORTHO05D006597 1.4e-60 236.5 154 72.7
CSS0004780 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 1.8e-60 236.1 155 74.8
Lj1A1031T79 Lonicera japonica HOM05D005446 ORTHO05D006597 2.3e-60 235.7 155 72.3
Duzib151G0274 Durio zibethinus HOM05D005446 ORTHO05D006597 3.1e-60 235.3 155 70.3
Lj3A584T51 Lonicera japonica HOM05D005446 ORTHO05D006597 4.0e-60 235.0 155 71.6
CiPaw.06G038600 Carya illinoinensis HOM05D005446 ORTHO05D006597 1.5e-59 233.0 155 72.3
Gohir.A07G102600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 2.0e-59 232.6 155 69.0
Ca_05549_v3 Cicer arietinum L. HOM05D005446 ORTHO05D006597 7.5e-59 230.7 152 72.4
Nn1g09694 Nelumbo nucifera HOM05D005446 ORTHO05D006597 9.9e-59 230.3 155 69.0
vmacro06473 Vaccinium macrocarpon HOM05D005446 ORTHO05D006597 9.9e-59 230.3 155 72.3
Ciclev10006132m.g Citrus clementina HOM05D005446 ORTHO05D006597 1.3e-58 229.9 155 71.6
Sabra15G0000700 Salix brachista HOM05D005446 ORTHO05D006597 1.7e-58 229.6 155 72.3
Gorai.001G114700 Gossypium raimondii HOM05D005446 ORTHO05D006597 2.2e-58 229.2 155 67.7
Medtr5g068650 Medicago truncatula HOM05D005446 ORTHO05D006597 2.9e-58 228.8 152 72.4
Oeu029325.1 Olea europaea HOM05D005446 ORTHO05D006597 3.7e-58 228.4 155 71.0
Eucgr.K00477 Eucalyptus grandis HOM05D005446 ORTHO05D006597 6.4e-58 227.6 155 69.0
Rhsim03G0218300 Rhododendron simsii HOM05D005446 ORTHO05D006597 6.4e-58 227.6 155 72.3
Eucgr.K00475 Eucalyptus grandis HOM05D005446 ORTHO05D006597 8.3e-58 227.3 155 69.7
Eucgr.L02508 Eucalyptus grandis HOM05D005446 ORTHO05D006597 8.3e-58 227.3 155 69.7
TWI18G0511 Tripterygium wilfordii HOM05D005446 ORTHO05D006597 1.1e-57 226.9 155 69.0
FAN03G2203 Fragaria x ananassa HOM05D005446 ORTHO05D006597 1.4e-57 226.5 155 71.6
Gohir.D07G001000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 1.4e-57 226.5 155 67.1
FAN01G0680 Fragaria x ananassa HOM05D005446 ORTHO05D006597 2.4e-57 225.7 155 71.0
Gohir.A03G015000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 2.4e-57 225.7 155 69.0
Migut.F00126 Erythranthe guttata HOM05D005446 ORTHO05D006597 3.2e-57 225.3 155 69.0
CSS0007128 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 4.1e-57 224.9 156 70.5
CSS0045409 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 4.1e-57 224.9 156 70.5
FAN10G1830 Fragaria x ananassa HOM05D005446 ORTHO05D006597 5.4e-57 224.6 155 70.3
SGA_v2.0_scaffold44G16871 Striga asiatica HOM05D005446 ORTHO05D006597 5.4e-57 224.6 174 65.5
FvH4_7g33290 Fragaria vesca HOM05D005446 ORTHO05D006597 7.1e-57 224.2 155 69.7
AUR62005952 Chenopodium quinoa HOM05D005446 ORTHO05D006597 1.2e-56 223.4 155 66.5
Gorai.001G000500 Gossypium raimondii HOM05D005446 ORTHO05D006597 1.6e-56 223.0 155 65.8
MSTRG.26955 Avicennia marina HOM05D005446 ORTHO05D006597 2.1e-56 222.6 155 68.4
Potri.015G001000 Populus trichocarpa HOM05D005446 ORTHO05D006597 2.1e-56 222.6 155 71.0
AUR62028113 Chenopodium quinoa HOM05D005446 ORTHO05D006597 2.7e-56 222.2 155 65.8
Gohir.D07G106600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 2.7e-56 222.2 155 65.8
RcHm_v2.0_Chr1g0383271 Rosa chinensis HOM05D005446 ORTHO05D006597 6.0e-56 221.1 155 69.0
Cpa.g.sc3.182 Carica papaya HOM05D005446 ORTHO05D006597 1.0e-55 220.3 155 67.7
Hund09744 Selenicereus undatus HOM05D005446 ORTHO05D006597 2.3e-55 219.2 155 68.4
CANSAT64G2376 Cannabis sativa HOM05D005446 ORTHO05D006597 3.0e-55 218.8 155 69.7
Prupe.2G321800 Prunus persica HOM05D005446 ORTHO05D006597 5.1e-55 218.0 155 66.5
EL10Ac3g05135 Beta vulgaris HOM05D005446 ORTHO05D006597 8.6e-55 217.2 155 65.8
MD07G1303100 Malus domestica HOM05D005446 ORTHO05D006597 1.1e-54 216.9 155 65.8
Peaxi162Scf00192g00016 Petunia axillaris HOM05D005446 ORTHO05D006597 4.3e-54 214.9 155 65.2
RcHm_v2.0_Chr3g0479561 Rosa chinensis HOM05D005446 ORTHO05D006597 5.6e-54 214.5 155 67.7
unitig_0.g2433 Utricularia gibba HOM05D005446 ORTHO05D006597 9.5e-54 213.8 155 67.1
Peaxi162Scf00038g02639 Petunia axillaris HOM05D005446 ORTHO05D006597 1.2e-53 213.4 155 64.5
Cc02_g16080 Coffea canephora HOM05D005446 ORTHO05D006597 4.7e-53 211.5 155 67.1
ClCG09G010380 Citrullus lanatus HOM05D005446 ORTHO05D006597 6.2e-53 211.1 155 67.1
Aqoxy5G00887 Aquilegia oxysepala HOM05D005446 ORTHO05D006597 8.1e-53 210.7 152 64.5
ECA247G1253 Erigeron canadensis HOM05D005446 ORTHO05D006597 1.1e-52 210.3 155 65.8
HanXRQChr02g0037361 Helianthus annuus HOM05D005446 ORTHO05D006597 1.1e-52 210.3 155 66.5
TAR629G0354 Trochodendron aralioides HOM05D005446 ORTHO05D006597 1.1e-52 210.3 145 68.3
Sopen01g002260 Solanum pennellii HOM05D005446 ORTHO05D006597 1.4e-52 209.9 155 63.2
TPR.G5849 Trifolium pratense HOM05D005446 ORTHO05D006597 1.4e-52 209.9 152 67.8
Aa31LG10G6780 Aethionema arabicum HOM05D005446 ORTHO05D006597 2.4e-52 209.1 154 64.3
PSO782G3129 Papaver somniferum HOM05D005446 ORTHO05D006597 2.4e-52 209.1 155 65.2
CsaV3_7G024240 Cucumis sativus L. HOM05D005446 ORTHO05D006597 3.1e-52 208.8 155 67.1
PSO170G1626 Papaver somniferum HOM05D005446 ORTHO05D006597 3.1e-52 208.8 155 64.5
CDE07G1092 Ceratophyllum demersum HOM05D005446 ORTHO05D006597 6.8e-52 207.6 155 61.3
DCAR_008034 Daucus carota HOM05D005446 ORTHO05D006597 6.8e-52 207.6 153 66.7
ATR0579G170 Amborella trichopoda HOM05D005446 ORTHO05D006597 1.5e-51 206.5 135 71.9
PGSC0003DMG400032145 Solanum tuberosum HOM05D005446 ORTHO05D006597 2.0e-51 206.1 155 61.9
MD01G1231100 Malus domestica HOM05D005446 ORTHO05D006597 7.6e-51 204.1 147 66.7
Sed0027394 Sechium edule HOM05D005446 ORTHO05D006597 7.6e-51 204.1 155 64.5
MELO3C023673.2 Cucumis melo HOM05D005446 ORTHO05D006597 1.7e-50 203.0 155 65.2
CARHR003990 Cardamine hirsuta HOM05D005446 ORTHO05D006597 8.4e-50 200.7 156 62.8
Ah.13g071020 Amaranthus hybridus HOM05D005446 ORTHO05D006597 2.4e-49 199.1 214 50.5
HanXRQChr02g0037371 Helianthus annuus HOM05D005446 ORTHO05D006597 2.4e-49 199.1 151 64.2
Carub.0001s0387 Capsella rubella HOM05D005446 ORTHO05D006597 1.2e-48 196.8 156 62.2
AL1G14320 Arabidopsis lyrata HOM05D005446 ORTHO05D006597 1.6e-48 196.4 156 61.5
CAN.G140.1 Capsicum annuum HOM05D005446 ORTHO05D006597 1.6e-48 196.4 155 60.0
Lsat_1_v5_gn_1_26901 Lactuca sativa HOM05D005446 ORTHO05D006597 1.6e-48 196.4 155 65.2
Nitab4.5_0005132g0070 Nicotiana tabacum HOM05D005446 ORTHO05D006597 4.6e-48 194.9 133 68.4
DCAR_019328 Daucus carota HOM05D005446 ORTHO05D006597 1.0e-47 193.7 133 69.9
QL04p035447 Quercus lobata HOM05D005446 ORTHO05D006597 1.3e-47 193.4 148 65.5
Thhalv10009004m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 1.7e-47 193.0 156 60.9
HPP92_023794 Vanilla planifolia HOM05D005446 ORTHO05D006597 2.3e-47 192.6 155 60.6
Solyc01g006260.4 Solanum lycopersicum HOM05D005446 ORTHO05D006597 3.0e-47 192.2 145 62.1
Zm00001eb200370 Zea mays HOM05D005446 ORTHO05D006597 3.0e-47 192.2 153 59.5
SHI13471 Sapria himalayana HOM05D005446 ORTHO05D006597 5.1e-47 191.4 188 52.1
Eucgr.K00052 Eucalyptus grandis HOM05D005446 ORTHO05D006597 6.6e-47 191.0 150 64.0
AT1G04635 Arabidopsis thaliana HOM05D005446 ORTHO05D006597 2.5e-46 189.1 156 59.6
Nitab4.5_0022559g0010 Nicotiana tabacum HOM05D005446 ORTHO05D006597 2.5e-46 189.1 127 69.3
MD07G1302900 Malus domestica HOM05D005446 ORTHO05D006597 5.6e-46 188.0 155 60.0
Os04g0295100 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 5.6e-46 188.0 162 60.5
Os05g0270500 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 7.3e-46 187.6 148 62.2
Eucgr.K00059 Eucalyptus grandis HOM05D005446 ORTHO05D006597 1.3e-45 186.8 150 63.3
THA.LOC104820657 Tarenaya hassleriana HOM05D005446 ORTHO05D006597 1.1e-44 183.7 156 57.7
Psat2g060440 Pisum sativum HOM05D005446 ORTHO05D006597 9.0e-44 180.6 146 62.3
Sp4g14630 Schrenkiella parvula HOM05D005446 ORTHO05D006597 1.4e-41 173.3 152 53.3
A10p03070 Brassica napus HOM05D002401 ORTHO05D007109 1.6e-40 169.9 154 51.3
BraA10t42580Z Brassica rapa HOM05D002401 ORTHO05D007109 2.1e-40 169.5 154 51.3
BolC5t29066H Brassica oleracea HOM05D002401 ORTHO05D007109 4.6e-40 168.3 124 59.7
C05p02830 Brassica napus HOM05D002401 ORTHO05D007109 6.0e-40 167.9 124 59.7
Sp1g03470 Schrenkiella parvula HOM05D005446 ORTHO05D006597 3.9e-39 165.2 153 51.0
Thhalv10017414m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 8.7e-39 164.1 128 58.6
TAR362G0055 Trochodendron aralioides HOM05D005446 ORTHO05D006597 3.3e-38 162.2 114 69.3
arahy.Tifrunner.gnm1.ann1.G1Q0KH Arachis hypogaea HOM05D005446 ORTHO05D006597 1.6e-37 159.8 106 68.9
PGR142G4477 Punica granatum HOM05D005446 ORTHO05D006597 2.1e-37 159.5 153 53.6
arahy.Tifrunner.gnm1.ann1.PTVQ9K Arachis hypogaea HOM05D005446 ORTHO05D006597 3.6e-37 158.7 106 67.9
Sc13g0010680 Simmondsia chinensis HOM05D005446 ORTHO05D006597 4.5e-35 151.8 99 73.7
SEGI_01150 Sequoiadendron giganteum HOM05D005446 ORTHO05D006597 3.8e-34 148.7 144 50.0
FAN10G3034 Fragaria x ananassa HOM05D005446 ORTHO05D006597 4.9e-34 148.3 104 69.2
QL09p006020 Quercus lobata HOM05D005446 ORTHO05D006597 9.3e-33 144.1 89 76.4
Ciclev10023849m.g Citrus clementina HOM05D005446 ORTHO05D006597 4.6e-32 141.7 103 64.1
Phvul.L004350 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 4.3e-30 135.2 68 97.1
CDE05G0789 Ceratophyllum demersum HOM05D002553 ORTHO05D002767 5.3e-28 128.3 142 47.2
Pp3c14_9250 Physcomitrium patens HOM05D005446 ORTHO05D006597 1.5e-27 126.7 128 51.6
AagrBONN_evm.TU.Sc2ySwM_117.1519 Anthoceros agrestis HOM05D005446 ORTHO05D006597 1.7e-26 123.2 129 46.5
QL09p006057 Quercus lobata HOM05D000605 ORTHO05D001937 1.7e-26 123.2 83 68.7
TPR.G27917 Trifolium pratense HOM05D005446 ORTHO05D006597 2.2e-26 122.9 152 47.4
Oeu055421.1 Olea europaea HOM05D005446 ORTHO05D006597 8.4e-26 120.9 109 57.8
Phvul.003G000382 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 8.4e-26 120.9 61 98.4
Phvul.L006525 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 8.4e-26 120.9 61 98.4
Mapoly0096s0024 Marchantia polymorpha HOM05D005446 ORTHO05D006597 2.9e-18 95.9 128 39.8
SMO356G0648 Selaginella moellendorffii HOM05D005446 ORTHO05D006597 1.1e-17 94.0 124 39.5
Psat2g148960 Pisum sativum HOM05D005446 ORTHO05D006597 4.3e-14 82.0 48 77.1
Cre01.g026100 Chlamydomonas reinhardtii HOM05D005446 ORTHO05D006597 3.7e-13 79.0 129 32.6
MELO3C018158.2 Cucumis melo HOM05D005446 ORTHO05D006597 2.4e-12 76.3 68 55.9


User provided reference genes

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