Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G000382 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 2.1e-28 128.3 63 100.0
Phvul.L006525 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 2.1e-28 128.3 63 100.0
Phvul.001G010300 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 3.4e-26 120.9 61 98.4
Phvul.003G000356 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 3.4e-26 120.9 61 98.4
Phvul.008G188200 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 3.4e-26 120.9 61 98.4
Phvul.L008700 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 3.4e-26 120.9 61 98.4
Glyma.02G221100 Glycine max HOM05D005446 ORTHO05D006597 7.9e-23 109.8 61 85.2
Glyma.14G188600 Glycine max HOM05D005446 ORTHO05D006597 7.9e-23 109.8 61 86.9
Actinidia08718 Actinidia chinensis HOM05D005446 ORTHO05D006597 2.5e-21 104.8 61 83.6
Haze_00330 Corylus avellana HOM05D005446 ORTHO05D006597 2.5e-21 104.8 61 82.0
CSS0004780 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 4.3e-21 104.0 61 83.6
Cfa016130 Carpinus fangiana HOM05D005446 ORTHO05D006597 5.7e-21 103.6 61 80.3
Dinv17279 Davidia involucrata HOM05D005446 ORTHO05D006597 1.3e-20 102.4 61 80.3
Duzib151G0274 Durio zibethinus HOM05D005446 ORTHO05D006597 1.6e-20 102.1 61 73.8
Thecc.04G200100 Theobroma cacao HOM05D005446 ORTHO05D006597 1.6e-20 102.1 61 73.8
Haze_23920 Corylus avellana HOM05D005446 ORTHO05D006597 2.1e-20 101.7 61 80.3
MBI12_g19204_MAGBIO Magnolia biondii HOM05D005446 ORTHO05D006597 2.8e-20 101.3 61 78.7
vmacro06473 Vaccinium macrocarpon HOM05D005446 ORTHO05D006597 2.8e-20 101.3 61 82.0
CiPaw.06G038600 Carya illinoinensis HOM05D005446 ORTHO05D006597 3.7e-20 100.9 61 77.0
Ca_05549_v3 Cicer arietinum L. HOM05D005446 ORTHO05D006597 4.8e-20 100.5 58 81.0
LjContig00155g0018941 Lotus japonicus HOM05D005446 ORTHO05D006597 4.8e-20 100.5 61 77.0
Manes.18G108200 Manihot esculenta HOM05D005446 ORTHO05D006597 4.8e-20 100.5 61 78.7
QL09p006048 Quercus lobata HOM05D005446 ORTHO05D006597 6.3e-20 100.1 61 77.0
QL09p006020 Quercus lobata HOM05D005446 ORTHO05D006597 1.1e-19 99.4 61 75.4
GSVIVG01038676001 Vitis vinifera HOM05D005446 ORTHO05D006597 1.1e-19 99.4 61 77.0
Potri.015G001200 Populus trichocarpa HOM05D005446 ORTHO05D006597 1.4e-19 99.0 61 78.7
Atru.chr12.2505 Acer truncatum HOM05D005446 ORTHO05D006597 1.8e-19 98.6 61 80.3
Atru.chr12.2528 Acer truncatum HOM05D005446 ORTHO05D006597 1.8e-19 98.6 61 80.3
Cpa.g.sc3.182 Carica papaya HOM05D005446 ORTHO05D006597 1.8e-19 98.6 61 75.4
Hund09744 Selenicereus undatus HOM05D005446 ORTHO05D006597 2.4e-19 98.2 61 75.4
TPR.G5849 Trifolium pratense HOM05D005446 ORTHO05D006597 2.4e-19 98.2 58 79.3
VMungo0647G1380 Vigna mungo HOM05D005446 ORTHO05D006597 3.1e-19 97.8 53 88.7
COL.COLO4_20178 Corchorus olitorius HOM05D005446 ORTHO05D006597 4.1e-19 97.4 61 72.1
Gohir.A03G015000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 4.1e-19 97.4 61 73.8
Gohir.A07G102600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 4.1e-19 97.4 61 72.1
Gorai.001G114700 Gossypium raimondii HOM05D005446 ORTHO05D006597 4.1e-19 97.4 61 72.1
TAR383G0718 Trochodendron aralioides HOM05D005446 ORTHO05D006597 4.1e-19 97.4 61 72.1
AUR62005952 Chenopodium quinoa HOM05D005446 ORTHO05D006597 5.3e-19 97.1 61 70.5
Medtr5g068650 Medicago truncatula HOM05D005446 ORTHO05D006597 5.3e-19 97.1 58 77.6
AUR62028113 Chenopodium quinoa HOM05D005446 ORTHO05D006597 6.9e-19 96.7 61 70.5
Eucgr.K00475 Eucalyptus grandis HOM05D005446 ORTHO05D006597 6.9e-19 96.7 61 75.4
Eucgr.K00477 Eucalyptus grandis HOM05D005446 ORTHO05D006597 6.9e-19 96.7 61 75.4
Eucgr.L02508 Eucalyptus grandis HOM05D005446 ORTHO05D006597 6.9e-19 96.7 61 75.4
Sabra15G0000700 Salix brachista HOM05D005446 ORTHO05D006597 6.9e-19 96.7 61 77.0
EL10Ac3g05135 Beta vulgaris HOM05D005446 ORTHO05D006597 9.0e-19 96.3 61 72.1
Lj1A1031T79 Lonicera japonica HOM05D005446 ORTHO05D006597 9.0e-19 96.3 61 73.8
Ah.13g071020 Amaranthus hybridus HOM05D005446 ORTHO05D006597 1.2e-18 95.9 61 72.1
Gohir.D07G001000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 1.2e-18 95.9 61 70.5
Gohir.D07G106600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 1.5e-18 95.5 61 70.5
Nn1g09694 Nelumbo nucifera HOM05D005446 ORTHO05D006597 1.5e-18 95.5 61 72.1
Rhsim03G0218300 Rhododendron simsii HOM05D005446 ORTHO05D006597 1.5e-18 95.5 61 78.7
Cc02_g16080 Coffea canephora HOM05D005446 ORTHO05D006597 2.0e-18 95.1 61 72.1
Lj3A584T51 Lonicera japonica HOM05D005446 ORTHO05D006597 2.0e-18 95.1 61 73.8
CSS0007128 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 3.4e-18 94.4 55 80.0
CSS0045409 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 3.4e-18 94.4 55 80.0
Lalb_Chr10g0102991 Lupinus albus HOM05D005446 ORTHO05D006597 4.5e-18 94.0 58 72.4
Gorai.001G000500 Gossypium raimondii HOM05D005446 ORTHO05D006597 5.9e-18 93.6 61 68.9
Psat2g060440 Pisum sativum HOM05D005446 ORTHO05D006597 7.6e-18 93.2 58 72.4
Potri.015G001000 Populus trichocarpa HOM05D005446 ORTHO05D006597 7.6e-18 93.2 61 75.4
SGA_v2.0_scaffold44G16871 Striga asiatica HOM05D005446 ORTHO05D006597 1.0e-17 92.8 60 73.3
ECA247G1253 Erigeron canadensis HOM05D005446 ORTHO05D006597 1.7e-17 92.0 61 70.5
Oeu029325.1 Olea europaea HOM05D005446 ORTHO05D006597 1.7e-17 92.0 61 70.5
Ciclev10006132m.g Citrus clementina HOM05D005446 ORTHO05D006597 2.2e-17 91.7 61 68.9
Peaxi162Scf00192g00016 Petunia axillaris HOM05D005446 ORTHO05D006597 2.2e-17 91.7 61 68.9
SHI13471 Sapria himalayana HOM05D005446 ORTHO05D006597 2.2e-17 91.7 61 65.6
MSTRG.26955 Avicennia marina HOM05D005446 ORTHO05D006597 2.9e-17 91.3 61 70.5
HanXRQChr02g0037361 Helianthus annuus HOM05D005446 ORTHO05D006597 2.9e-17 91.3 61 70.5
MD07G1303100 Malus domestica HOM05D005446 ORTHO05D006597 3.8e-17 90.9 61 68.9
ATR0579G170 Amborella trichopoda HOM05D005446 ORTHO05D006597 5.0e-17 90.5 61 67.2
AL1G14320 Arabidopsis lyrata HOM05D005446 ORTHO05D006597 5.0e-17 90.5 62 69.4
AT1G04635 Arabidopsis thaliana HOM05D005446 ORTHO05D006597 5.0e-17 90.5 62 69.4
Carub.0001s0387 Capsella rubella HOM05D005446 ORTHO05D006597 5.0e-17 90.5 62 69.4
Thhalv10009004m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 5.0e-17 90.5 62 69.4
ClCG09G010380 Citrullus lanatus HOM05D005446 ORTHO05D006597 6.5e-17 90.1 61 70.5
MD07G1302900 Malus domestica HOM05D005446 ORTHO05D006597 6.5e-17 90.1 59 69.5
Peaxi162Scf00038g02639 Petunia axillaris HOM05D005446 ORTHO05D006597 6.5e-17 90.1 61 67.2
arahy.Tifrunner.gnm1.ann1.G1Q0KH Arachis hypogaea HOM05D005446 ORTHO05D006597 8.5e-17 89.7 61 65.6
Lsat_1_v5_gn_1_26901 Lactuca sativa HOM05D005446 ORTHO05D006597 8.5e-17 89.7 61 72.1
TWI18G0511 Tripterygium wilfordii HOM05D005446 ORTHO05D006597 8.5e-17 89.7 61 67.2
Aa31LG10G6780 Aethionema arabicum HOM05D005446 ORTHO05D006597 1.1e-16 89.4 62 67.7
Aqoxy5G00887 Aquilegia oxysepala HOM05D005446 ORTHO05D006597 1.1e-16 89.4 59 67.8
CARHR003990 Cardamine hirsuta HOM05D005446 ORTHO05D006597 1.1e-16 89.4 62 67.7
Migut.F00126 Erythranthe guttata HOM05D005446 ORTHO05D006597 1.1e-16 89.4 61 68.9
Nitab4.5_0005132g0070 Nicotiana tabacum HOM05D005446 ORTHO05D006597 1.1e-16 89.4 61 68.9
TAR362G0055 Trochodendron aralioides HOM05D005446 ORTHO05D006597 1.1e-16 89.4 61 70.5
CANSAT64G2376 Cannabis sativa HOM05D005446 ORTHO05D006597 1.4e-16 89.0 61 70.5
FvH4_7g33290 Fragaria vesca HOM05D005446 ORTHO05D006597 1.4e-16 89.0 61 67.2
FAN01G0680 Fragaria x ananassa HOM05D005446 ORTHO05D006597 1.4e-16 89.0 61 67.2
FAN03G2203 Fragaria x ananassa HOM05D005446 ORTHO05D006597 1.4e-16 89.0 61 67.2
FAN10G3034 Fragaria x ananassa HOM05D005446 ORTHO05D006597 1.4e-16 89.0 61 67.2
Sed0027394 Sechium edule HOM05D005446 ORTHO05D006597 1.4e-16 89.0 58 70.7
arahy.Tifrunner.gnm1.ann1.PTVQ9K Arachis hypogaea HOM05D005446 ORTHO05D006597 1.9e-16 88.6 61 65.6
RcHm_v2.0_Chr1g0383271 Rosa chinensis HOM05D005446 ORTHO05D006597 1.9e-16 88.6 61 65.6
CsaV3_7G024240 Cucumis sativus L. HOM05D005446 ORTHO05D006597 2.5e-16 88.2 61 68.9
PSO170G1626 Papaver somniferum HOM05D005446 ORTHO05D006597 2.5e-16 88.2 61 67.2
PSO782G3129 Papaver somniferum HOM05D005446 ORTHO05D006597 2.5e-16 88.2 61 67.2
CDE07G1092 Ceratophyllum demersum HOM05D005446 ORTHO05D006597 3.2e-16 87.8 61 63.9
FAN10G1830 Fragaria x ananassa HOM05D005446 ORTHO05D006597 3.2e-16 87.8 61 65.6
CDE05G0789 Ceratophyllum demersum HOM05D002553 ORTHO05D002767 4.2e-16 87.4 59 62.7
Nitab4.5_0022559g0010 Nicotiana tabacum HOM05D005446 ORTHO05D006597 5.5e-16 87.0 61 67.2
unitig_0.g2433 Utricularia gibba HOM05D005446 ORTHO05D006597 5.5e-16 87.0 61 68.9
HanXRQChr02g0037371 Helianthus annuus HOM05D005446 ORTHO05D006597 7.2e-16 86.7 61 67.2
RcHm_v2.0_Chr3g0479561 Rosa chinensis HOM05D005446 ORTHO05D006597 7.2e-16 86.7 61 65.6
MELO3C023673.2 Cucumis melo HOM05D005446 ORTHO05D006597 9.3e-16 86.3 61 67.2
DCAR_008034 Daucus carota HOM05D005446 ORTHO05D006597 9.3e-16 86.3 61 67.2
Prupe.2G321800 Prunus persica HOM05D005446 ORTHO05D006597 1.2e-15 85.9 58 65.5
Sopen01g002260 Solanum pennellii HOM05D005446 ORTHO05D006597 2.1e-15 85.1 61 60.7
HPP92_023794 Vanilla planifolia HOM05D005446 ORTHO05D006597 2.1e-15 85.1 61 65.6
DCAR_019328 Daucus carota HOM05D005446 ORTHO05D006597 3.6e-15 84.3 61 65.6
PGSC0003DMG400032145 Solanum tuberosum HOM05D005446 ORTHO05D006597 6.1e-15 83.6 61 59.0
QL04p035447 Quercus lobata HOM05D005446 ORTHO05D006597 7.9e-15 83.2 53 73.6
Thhalv10017414m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 3.9e-14 80.9 62 59.7
Sc13g0010680 Simmondsia chinensis HOM05D005446 ORTHO05D006597 1.1e-13 79.3 54 68.5
A10p03070 Brassica napus HOM05D002401 ORTHO05D007109 1.5e-13 79.0 59 59.3
BolC5t29066H Brassica oleracea HOM05D002401 ORTHO05D007109 1.5e-13 79.0 59 59.3
BraA10t42580Z Brassica rapa HOM05D002401 ORTHO05D007109 1.5e-13 79.0 59 59.3
Sp4g14630 Schrenkiella parvula HOM05D005446 ORTHO05D006597 1.5e-13 79.0 59 59.3
C05p02830 Brassica napus HOM05D002401 ORTHO05D007109 1.9e-13 78.6 59 59.3
Oeu055421.1 Olea europaea HOM05D005446 ORTHO05D006597 1.9e-13 78.6 58 60.3
Ciclev10023849m.g Citrus clementina HOM05D005446 ORTHO05D006597 5.7e-13 77.0 58 60.3
TAR629G0354 Trochodendron aralioides HOM05D005446 ORTHO05D006597 5.7e-13 77.0 51 70.6
Zm00001eb200370 Zea mays HOM05D005446 ORTHO05D006597 1.6e-12 75.5 61 59.0
Sp1g03470 Schrenkiella parvula HOM05D005446 ORTHO05D006597 2.2e-12 75.1 58 56.9
CAN.G140.1 Capsicum annuum HOM05D005446 ORTHO05D006597 3.7e-12 74.3 61 55.7
THA.LOC104820657 Tarenaya hassleriana HOM05D005446 ORTHO05D006597 6.3e-12 73.6 62 56.5
MD01G1231100 Malus domestica HOM05D005446 ORTHO05D006597 1.8e-11 72.0 53 64.2
Os04g0295100 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 1.8e-11 72.0 60 60.0
Os05g0270500 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 2.6e-10 68.2 61 55.7
Eucgr.K00052 Eucalyptus grandis HOM05D005446 ORTHO05D006597 4.5e-10 67.4 61 60.7
Solyc01g006260.4 Solanum lycopersicum HOM05D005446 ORTHO05D006597 4.5e-10 67.4 51 56.9
Eucgr.K00059 Eucalyptus grandis HOM05D005446 ORTHO05D006597 2.2e-09 65.1 61 59.0


User provided reference genes

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