Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.L004350 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 5.9e-32 140.2 68 100.0
Phvul.001G010300 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 5.0e-31 137.1 68 98.5
Phvul.008G188200 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 5.0e-31 137.1 68 98.5
Phvul.L008700 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.9e-30 135.2 68 97.1
Phvul.003G000356 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 5.5e-30 133.7 68 97.1
VMungo0647G1380 Vigna mungo HOM05D005446 ORTHO05D006597 2.8e-26 121.3 68 88.2
Glyma.02G221100 Glycine max HOM05D005446 ORTHO05D006597 1.3e-23 112.5 68 80.9
Glyma.14G188600 Glycine max HOM05D005446 ORTHO05D006597 1.7e-23 112.1 68 80.9
LjContig00155g0018941 Lotus japonicus HOM05D005446 ORTHO05D006597 2.1e-21 105.1 68 73.5
Lalb_Chr10g0102991 Lupinus albus HOM05D005446 ORTHO05D006597 4.7e-21 104.0 68 72.1
SGA_v2.0_scaffold44G16871 Striga asiatica HOM05D005446 ORTHO05D006597 3.0e-20 101.3 68 70.6
COL.COLO4_20178 Corchorus olitorius HOM05D005446 ORTHO05D006597 8.8e-20 99.8 68 70.6
Haze_00330 Corylus avellana HOM05D005446 ORTHO05D006597 1.2e-19 99.4 68 70.6
Haze_23920 Corylus avellana HOM05D005446 ORTHO05D006597 1.2e-19 99.4 68 70.6
TAR383G0718 Trochodendron aralioides HOM05D005446 ORTHO05D006597 1.2e-19 99.4 68 67.6
Cfa016130 Carpinus fangiana HOM05D005446 ORTHO05D006597 3.4e-19 97.8 68 69.1
Thecc.04G200100 Theobroma cacao HOM05D005446 ORTHO05D006597 3.4e-19 97.8 68 69.1
Medtr5g068650 Medicago truncatula HOM05D005446 ORTHO05D006597 5.7e-19 97.1 68 69.1
GSVIVG01038676001 Vitis vinifera HOM05D005446 ORTHO05D006597 7.5e-19 96.7 68 64.7
Manes.18G108200 Manihot esculenta HOM05D005446 ORTHO05D006597 9.7e-19 96.3 68 66.2
MBI12_g19204_MAGBIO Magnolia biondii HOM05D005446 ORTHO05D006597 1.7e-18 95.5 68 63.2
QL09p006048 Quercus lobata HOM05D005446 ORTHO05D006597 1.7e-18 95.5 67 67.2
QL09p006057 Quercus lobata HOM05D000605 ORTHO05D001937 2.2e-18 95.1 67 67.2
Gohir.A07G102600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 2.8e-18 94.7 68 66.2
Ca_05549_v3 Cicer arietinum L. HOM05D005446 ORTHO05D006597 3.7e-18 94.4 68 64.7
Migut.F00126 Erythranthe guttata HOM05D005446 ORTHO05D006597 3.7e-18 94.4 68 66.2
Nn1g09694 Nelumbo nucifera HOM05D005446 ORTHO05D006597 4.8e-18 94.0 68 63.2
Atru.chr12.2505 Acer truncatum HOM05D005446 ORTHO05D006597 6.3e-18 93.6 68 66.2
TWI18G0511 Tripterygium wilfordii HOM05D005446 ORTHO05D006597 6.3e-18 93.6 68 64.7
Ciclev10006132m.g Citrus clementina HOM05D005446 ORTHO05D006597 1.1e-17 92.8 68 67.6
Dinv17279 Davidia involucrata HOM05D005446 ORTHO05D006597 1.1e-17 92.8 68 64.7
Atru.chr12.2528 Acer truncatum HOM05D005446 ORTHO05D006597 1.4e-17 92.4 68 64.7
CSS0004780 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 1.4e-17 92.4 68 64.7
FAN03G2203 Fragaria x ananassa HOM05D005446 ORTHO05D006597 1.4e-17 92.4 68 69.1
Gorai.001G114700 Gossypium raimondii HOM05D005446 ORTHO05D006597 1.4e-17 92.4 68 64.7
Oeu029325.1 Olea europaea HOM05D005446 ORTHO05D006597 1.4e-17 92.4 68 66.2
CSS0007128 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 1.8e-17 92.0 68 63.2
CSS0045409 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 1.8e-17 92.0 68 63.2
Duzib151G0274 Durio zibethinus HOM05D005446 ORTHO05D006597 1.8e-17 92.0 68 66.2
MSTRG.26955 Avicennia marina HOM05D005446 ORTHO05D006597 2.4e-17 91.7 68 64.7
FAN01G0680 Fragaria x ananassa HOM05D005446 ORTHO05D006597 2.4e-17 91.7 68 67.6
FAN10G1830 Fragaria x ananassa HOM05D005446 ORTHO05D006597 2.4e-17 91.7 68 67.6
Gohir.D07G001000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 2.4e-17 91.7 68 64.7
Gorai.001G000500 Gossypium raimondii HOM05D005446 ORTHO05D006597 2.4e-17 91.7 68 64.7
Lj1A1031T79 Lonicera japonica HOM05D005446 ORTHO05D006597 2.4e-17 91.7 68 63.2
Lj3A584T51 Lonicera japonica HOM05D005446 ORTHO05D006597 3.1e-17 91.3 68 61.8
Eucgr.K00477 Eucalyptus grandis HOM05D005446 ORTHO05D006597 4.1e-17 90.9 68 61.8
Gohir.A03G015000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 4.1e-17 90.9 68 66.2
Actinidia08718 Actinidia chinensis HOM05D005446 ORTHO05D006597 5.3e-17 90.5 68 63.2
FvH4_7g33290 Fragaria vesca HOM05D005446 ORTHO05D006597 5.3e-17 90.5 68 66.2
Eucgr.K00475 Eucalyptus grandis HOM05D005446 ORTHO05D006597 7.0e-17 90.1 68 61.8
Eucgr.L02508 Eucalyptus grandis HOM05D005446 ORTHO05D006597 7.0e-17 90.1 68 61.8
MD01G1231100 Malus domestica HOM05D005446 ORTHO05D006597 7.0e-17 90.1 68 64.7
CANSAT64G2376 Cannabis sativa HOM05D005446 ORTHO05D006597 9.1e-17 89.7 68 64.7
MD07G1302900 Malus domestica HOM05D005446 ORTHO05D006597 9.1e-17 89.7 68 64.7
Potri.015G001200 Populus trichocarpa HOM05D005446 ORTHO05D006597 9.1e-17 89.7 68 64.7
TAR629G0354 Trochodendron aralioides HOM05D005446 ORTHO05D006597 9.1e-17 89.7 68 60.3
Aqoxy5G00887 Aquilegia oxysepala HOM05D005446 ORTHO05D006597 1.6e-16 89.0 65 63.1
CiPaw.06G038600 Carya illinoinensis HOM05D005446 ORTHO05D006597 2.0e-16 88.6 68 63.2
RcHm_v2.0_Chr1g0383271 Rosa chinensis HOM05D005446 ORTHO05D006597 2.0e-16 88.6 68 66.2
Prupe.2G321800 Prunus persica HOM05D005446 ORTHO05D006597 2.7e-16 88.2 68 63.2
Gohir.D07G106600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 4.5e-16 87.4 68 61.8
MD07G1303100 Malus domestica HOM05D005446 ORTHO05D006597 4.5e-16 87.4 68 63.2
unitig_0.g2433 Utricularia gibba HOM05D005446 ORTHO05D006597 1.0e-15 86.3 68 61.8
Sabra15G0000700 Salix brachista HOM05D005446 ORTHO05D006597 1.7e-15 85.5 68 61.8
Potri.015G001000 Populus trichocarpa HOM05D005446 ORTHO05D006597 2.2e-15 85.1 68 60.3
RcHm_v2.0_Chr3g0479561 Rosa chinensis HOM05D005446 ORTHO05D006597 2.2e-15 85.1 68 63.2
AUR62005952 Chenopodium quinoa HOM05D005446 ORTHO05D006597 2.9e-15 84.7 68 58.8
Rhsim03G0218300 Rhododendron simsii HOM05D005446 ORTHO05D006597 2.9e-15 84.7 68 60.3
AUR62028113 Chenopodium quinoa HOM05D005446 ORTHO05D006597 5.0e-15 84.0 68 57.4
Os04g0295100 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 5.0e-15 84.0 66 62.1
Eucgr.K00059 Eucalyptus grandis HOM05D005446 ORTHO05D006597 6.5e-15 83.6 63 63.5
Solyc01g006260.4 Solanum lycopersicum HOM05D005446 ORTHO05D006597 6.5e-15 83.6 68 60.3
Sopen01g002260 Solanum pennellii HOM05D005446 ORTHO05D006597 6.5e-15 83.6 68 60.3
Eucgr.K00052 Eucalyptus grandis HOM05D005446 ORTHO05D006597 8.5e-15 83.2 63 61.9
Peaxi162Scf00038g02639 Petunia axillaris HOM05D005446 ORTHO05D006597 1.9e-14 82.0 68 57.4
Peaxi162Scf00192g00016 Petunia axillaris HOM05D005446 ORTHO05D006597 1.9e-14 82.0 68 57.4
PGSC0003DMG400032145 Solanum tuberosum HOM05D005446 ORTHO05D006597 3.2e-14 81.3 68 58.8
vmacro06473 Vaccinium macrocarpon HOM05D005446 ORTHO05D006597 3.2e-14 81.3 68 57.4
Aa31LG10G6780 Aethionema arabicum HOM05D005446 ORTHO05D006597 4.2e-14 80.9 66 57.6
CAN.G140.1 Capsicum annuum HOM05D005446 ORTHO05D006597 4.2e-14 80.9 68 57.4
DCAR_008034 Daucus carota HOM05D005446 ORTHO05D006597 4.2e-14 80.9 66 62.1
PSO782G3129 Papaver somniferum HOM05D005446 ORTHO05D006597 5.5e-14 80.5 68 58.8
Cpa.g.sc3.182 Carica papaya HOM05D005446 ORTHO05D006597 7.2e-14 80.1 68 55.9
PSO170G1626 Papaver somniferum HOM05D005446 ORTHO05D006597 7.2e-14 80.1 68 57.4
SHI13471 Sapria himalayana HOM05D005446 ORTHO05D006597 7.2e-14 80.1 66 59.1
ClCG09G010380 Citrullus lanatus HOM05D005446 ORTHO05D006597 9.4e-14 79.7 68 58.8
Zm00001eb200370 Zea mays HOM05D005446 ORTHO05D006597 9.4e-14 79.7 66 56.1
Hund09744 Selenicereus undatus HOM05D005446 ORTHO05D006597 1.6e-13 79.0 68 55.9
EL10Ac3g05135 Beta vulgaris HOM05D005446 ORTHO05D006597 2.7e-13 78.2 68 54.4
CDE07G1092 Ceratophyllum demersum HOM05D005446 ORTHO05D006597 2.7e-13 78.2 68 54.4
Os05g0270500 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 2.7e-13 78.2 61 60.7
TPR.G5849 Trifolium pratense HOM05D005446 ORTHO05D006597 2.7e-13 78.2 68 58.8
ECA247G1253 Erigeron canadensis HOM05D005446 ORTHO05D006597 3.6e-13 77.8 68 57.4
CsaV3_7G024240 Cucumis sativus L. HOM05D005446 ORTHO05D006597 4.7e-13 77.4 68 58.8
PGR142G4477 Punica granatum HOM05D005446 ORTHO05D006597 8.0e-13 76.6 66 54.5
Sed0027394 Sechium edule HOM05D005446 ORTHO05D006597 1.4e-12 75.9 68 58.8
MELO3C023673.2 Cucumis melo HOM05D005446 ORTHO05D006597 3.0e-12 74.7 68 57.4
Cc02_g16080 Coffea canephora HOM05D005446 ORTHO05D006597 4.0e-12 74.3 68 57.4
MELO3C018158.2 Cucumis melo HOM05D005446 ORTHO05D006597 5.2e-12 73.9 68 55.9
HanXRQChr02g0037361 Helianthus annuus HOM05D005446 ORTHO05D006597 6.8e-12 73.6 68 55.9
CARHR003990 Cardamine hirsuta HOM05D005446 ORTHO05D006597 1.2e-11 72.8 68 54.4
Psat2g060440 Pisum sativum HOM05D005446 ORTHO05D006597 1.2e-11 72.8 52 67.3
HPP92_023794 Vanilla planifolia HOM05D005446 ORTHO05D006597 1.5e-11 72.4 68 55.9
THA.LOC104820657 Tarenaya hassleriana HOM05D005446 ORTHO05D006597 2.0e-11 72.0 68 51.5
ATR0579G170 Amborella trichopoda HOM05D005446 ORTHO05D006597 2.6e-11 71.6 48 70.8
Lsat_1_v5_gn_1_26901 Lactuca sativa HOM05D005446 ORTHO05D006597 7.5e-11 70.1 68 54.4
Carub.0001s0387 Capsella rubella HOM05D005446 ORTHO05D006597 1.3e-10 69.3 68 52.9
AL1G14320 Arabidopsis lyrata HOM05D005446 ORTHO05D006597 1.7e-10 68.9 68 51.5
HanXRQChr02g0037371 Helianthus annuus HOM05D005446 ORTHO05D006597 1.7e-10 68.9 64 54.7
Ah.13g071020 Amaranthus hybridus HOM05D005446 ORTHO05D006597 8.3e-10 66.6 50 62.0
Thhalv10009004m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 8.3e-10 66.6 68 51.5
QL04p035447 Quercus lobata HOM05D005446 ORTHO05D006597 8.3e-10 66.6 69 52.2
DCAR_019328 Daucus carota HOM05D005446 ORTHO05D006597 1.1e-09 66.2 46 69.6
TPR.G27917 Trifolium pratense HOM05D005446 ORTHO05D006597 1.4e-09 65.9 68 54.4
SEGI_01150 Sequoiadendron giganteum HOM05D005446 ORTHO05D006597 2.4e-09 65.1 65 50.8
Nitab4.5_0005132g0070 Nicotiana tabacum HOM05D005446 ORTHO05D006597 4.1e-09 64.3 46 63.0
AT1G04635 Arabidopsis thaliana HOM05D005446 ORTHO05D006597 5.4e-09 63.9 68 48.5
Nitab4.5_0022559g0010 Nicotiana tabacum HOM05D005446 ORTHO05D006597 4.5e-08 60.8 40 67.5
Sp4g14630 Schrenkiella parvula HOM05D005446 ORTHO05D006597 7.7e-08 60.1 64 46.9
CDE05G0789 Ceratophyllum demersum HOM05D002553 ORTHO05D002767 1.7e-07 58.9 40 67.5
A10p03070 Brassica napus HOM05D002401 ORTHO05D007109 5.0e-07 57.4 66 43.9
BraA10t42580Z Brassica rapa HOM05D002401 ORTHO05D007109 6.6e-07 57.0 66 43.9
C05p02830 Brassica napus HOM05D002401 ORTHO05D007109 1.5e-06 55.8 38 63.2
BolC5t29066H Brassica oleracea HOM05D002401 ORTHO05D007109 1.5e-06 55.8 38 63.2
Sp1g03470 Schrenkiella parvula HOM05D005446 ORTHO05D006597 1.5e-06 55.8 65 44.6


User provided reference genes

Program Settings