Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.L002432 Phaseolus vulgaris HOM05D002281 ORTHO05D006774 0.0e+00 1699.1 888 100.0
VMungo0720G2591 Vigna mungo HOM05D002281 ORTHO05D006774 0.0e+00 1602.8 888 94.0
Glyma.20G221100 Glycine max HOM05D002281 ORTHO05D006774 0.0e+00 1456.4 888 85.7
Glyma.10G168600 Glycine max HOM05D002281 ORTHO05D006774 0.0e+00 1434.1 888 84.9
Ca_09982_v3 Cicer arietinum L. HOM05D002281 ORTHO05D006774 0.0e+00 1402.5 888 83.0
Medtr1g079525 Medicago truncatula HOM05D002281 ORTHO05D006774 0.0e+00 1366.3 885 80.5
Psat6g141840 Pisum sativum HOM05D002281 ORTHO05D006774 0.0e+00 1360.5 881 79.9
Lj5g0010111 Lotus japonicus HOM05D002281 ORTHO05D006774 0.0e+00 1356.7 894 80.0
arahy.Tifrunner.gnm1.ann1.BY82ZN Arachis hypogaea HOM05D002281 ORTHO05D006774 0.0e+00 1353.6 896 79.8
Lalb_Chr21g0311311 Lupinus albus HOM05D002281 ORTHO05D006774 0.0e+00 1324.7 888 78.5
TPR.G31600 Trifolium pratense HOM05D002281 ORTHO05D006774 0.0e+00 1320.8 887 78.0
GSVIVG01026351001 Vitis vinifera HOM05D002281 ORTHO05D006774 0.0e+00 1286.2 880 74.8
Manes.09G145600 Manihot esculenta HOM05D002281 ORTHO05D006774 0.0e+00 1282.7 826 79.2
MELO3C010108.2 Cucumis melo HOM05D002281 ORTHO05D006774 0.0e+00 1273.5 887 75.5
CsaV3_1G044940 Cucumis sativus L. HOM05D002281 ORTHO05D006774 0.0e+00 1273.5 855 77.7
Sed0014107 Sechium edule HOM05D002281 ORTHO05D006774 0.0e+00 1270.0 854 77.8
Eucgr.B02168 Eucalyptus grandis HOM05D002281 ORTHO05D006774 0.0e+00 1261.5 830 79.2
RcHm_v2.0_Chr3g0448921 Rosa chinensis HOM05D002281 ORTHO05D006774 0.0e+00 1257.7 899 74.0
FvH4_6g01350 Fragaria vesca HOM05D002281 ORTHO05D006774 0.0e+00 1256.9 885 75.5
Cfa006305 Carpinus fangiana HOM05D002281 ORTHO05D006774 0.0e+00 1250.0 879 74.2
Nn3g19861 Nelumbo nucifera HOM05D002281 ORTHO05D006774 0.0e+00 1247.6 834 76.7
arahy.Tifrunner.gnm1.ann1.76MSW2 Arachis hypogaea HOM05D002281 ORTHO05D006774 0.0e+00 1245.0 908 75.0
COL.COLO4_38180 Corchorus olitorius HOM05D002281 ORTHO05D006774 0.0e+00 1243.8 820 77.2
TWI60G1049 Tripterygium wilfordii HOM05D002281 ORTHO05D006774 0.0e+00 1240.7 860 74.1
FAN14G3852 Fragaria x ananassa HOM05D002281 ORTHO05D006774 0.0e+00 1239.2 885 74.7
Actinidia06827 Actinidia chinensis HOM05D002281 ORTHO05D006774 0.0e+00 1238.8 894 72.5
FAN14G5004 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1238.8 886 74.3
FAN09G1447 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1238.4 874 75.6
FAN05G1240 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1237.2 877 75.4
CANSAT54G2391 Cannabis sativa HOM05D002281 ORTHO05D006774 0.0e+00 1236.1 870 74.6
FAN05G1274 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1231.9 884 74.8
PGR142G3453 Punica granatum HOM05D002281 ORTHO05D006774 0.0e+00 1230.7 827 75.9
CSS0040843 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D006774 0.0e+00 1225.3 885 72.1
MD04G1234900 Malus domestica HOM05D002281 ORTHO05D006774 0.0e+00 1224.9 898 73.5
Atru.chr2.1137 Acer truncatum HOM05D002281 ORTHO05D006774 0.0e+00 1224.5 862 74.7
THA.LOC104820754 Tarenaya hassleriana HOM05D002281 ORTHO05D006774 0.0e+00 1224.5 835 76.6
Ciclev10023441m.g Citrus clementina HOM05D002281 ORTHO05D006774 0.0e+00 1222.6 873 72.9
Gohir.A13G103100 Gossypium hirsutum HOM05D002281 ORTHO05D006774 0.0e+00 1222.6 874 73.8
Gohir.D13G106200 Gossypium hirsutum HOM05D002281 ORTHO05D006774 0.0e+00 1221.1 829 76.7
Gorai.013G119100 Gossypium raimondii HOM05D002281 ORTHO05D006774 0.0e+00 1218.8 829 75.8
Nitab4.5_0001498g0040 Nicotiana tabacum HOM05D002281 ORTHO05D006774 0.0e+00 1214.5 887 73.1
Sopen04g021370 Solanum pennellii HOM05D002281 ORTHO05D006774 0.0e+00 1214.5 863 73.8
Thecc.05G264900 Theobroma cacao HOM05D002281 ORTHO05D006774 0.0e+00 1214.1 831 75.0
Oeu001246.1 Olea europaea HOM05D002281 ORTHO05D006774 0.0e+00 1213.7 886 70.8
Aqoxy2G03815 Aquilegia oxysepala HOM05D002281 ORTHO05D006774 0.0e+00 1212.6 878 71.4
Nitab4.5_0006530g0020 Nicotiana tabacum HOM05D002281 ORTHO05D006774 0.0e+00 1212.2 884 72.7
Solyc04g050540.4 Solanum lycopersicum HOM05D002281 ORTHO05D006774 0.0e+00 1212.2 863 73.7
Thhalv10020015m.g Eutrema salsugineum HOM05D002281 ORTHO05D006774 0.0e+00 1211.1 871 72.4
MSTRG.27429 Avicennia marina HOM05D002281 ORTHO05D006774 0.0e+00 1208.7 826 73.8
CAN.G131.14 Capsicum annuum HOM05D002281 ORTHO05D006774 0.0e+00 1207.2 861 72.9
Sp3g03170 Schrenkiella parvula HOM05D002281 ORTHO05D006774 0.0e+00 1207.2 876 71.7
CARHR078410 Cardamine hirsuta HOM05D002281 ORTHO05D006774 0.0e+00 1204.1 869 72.7
TAR365G0274 Trochodendron aralioides HOM05D002281 ORTHO05D006774 0.0e+00 1204.1 838 76.4
AL3G14240 Arabidopsis lyrata HOM05D002281 ORTHO05D006774 0.0e+00 1203.7 874 71.6
SGA_v2.0_scaffold62G21474 Striga asiatica HOM05D002281 ORTHO05D006774 0.0e+00 1203.3 895 69.6
AT3G04260 Arabidopsis thaliana HOM05D002281 ORTHO05D006774 0.0e+00 1201.4 870 72.3
Carub.0003s0347 Capsella rubella HOM05D002281 ORTHO05D006774 0.0e+00 1201.4 878 71.3
Potri.019G025100 Populus trichocarpa HOM05D002281 ORTHO05D006774 0.0e+00 1201.0 884 72.6
BraA01t04526Z Brassica rapa HOM05D002281 ORTHO05D006774 0.0e+00 1199.1 877 70.9
BcaC09g47811 Brassica carinata HOM05D002281 ORTHO05D006774 0.0e+00 1198.0 887 70.7
Migut.F02048 Erythranthe guttata HOM05D002281 ORTHO05D006774 0.0e+00 1187.2 867 71.4
PSO017G1794 Papaver somniferum HOM05D002281 ORTHO05D006774 0.0e+00 1186.4 820 76.1
PSO063G1810 Papaver somniferum HOM05D002281 ORTHO05D006774 0.0e+00 1185.6 821 76.1
Lj2C48G13 Lonicera japonica HOM05D002281 ORTHO05D006774 0.0e+00 1176.0 880 68.2
ATR0787G153 Amborella trichopoda HOM05D002281 ORTHO05D006774 0.0e+00 1171.8 844 74.1
DCAR_027530 Daucus carota HOM05D002281 ORTHO05D006774 0.0e+00 1170.2 878 70.7
Aa31LG5G14740 Aethionema arabicum HOM05D002281 ORTHO05D006774 0.0e+00 1168.3 900 69.8
Peaxi162Scf00071g00258 Petunia axillaris HOM05D002281 ORTHO05D006774 0.0e+00 1164.4 865 71.6
BcaNung04817 Brassica carinata HOM05D002281 ORTHO05D006774 0.0e+00 1157.9 871 69.7
AUR62006996 Chenopodium quinoa HOM05D002281 ORTHO05D006774 0.0e+00 1153.3 886 67.2
AUR62000641 Chenopodium quinoa HOM05D002281 ORTHO05D006774 0.0e+00 1148.3 884 66.9
Prupe.6G354700 Prunus persica HOM05D002281 ORTHO05D006774 0.0e+00 1147.5 885 68.5
Hund07166 Selenicereus undatus HOM05D002281 ORTHO05D006774 0.0e+00 1137.5 857 70.6
HanXRQChr14g0434631 Helianthus annuus HOM05D002281 ORTHO05D006774 0.0e+00 1124.8 826 68.6
EL10Ac4g09786 Beta vulgaris HOM05D002281 ORTHO05D006774 0.0e+00 1117.4 853 68.3
Dinv05783 Davidia involucrata HOM05D002281 ORTHO05D006774 0.0e+00 1113.6 826 70.9
ECA238G3638 Erigeron canadensis HOM05D002281 ORTHO05D006774 0.0e+00 1112.1 823 67.8
Lsat_1_v5_gn_2_16580 Lactuca sativa HOM05D002281 ORTHO05D006774 0.0e+00 1103.6 835 69.0
Sabra19G0034700 Salix brachista HOM05D002281 ORTHO05D006774 0.0e+00 1099.3 840 70.4
Os10g0462800 Oryza sativa ssp. japonica HOM05D002281 ORTHO05D006774 0.0e+00 1097.0 827 68.8
Zm00001eb046590 Zea mays HOM05D002281 ORTHO05D006774 0.0e+00 1091.3 821 69.4
unitig_899.g14420 Utricularia gibba HOM05D002281 ORTHO05D006774 0.0e+00 1088.9 826 68.5
A01p40910 Brassica napus HOM05D002281 ORTHO05D006774 2.1e-307 1058.9 781 70.2
BNapus_Darmor_BZH_scaffold_78p00800 Brassica napus HOM05D002281 ORTHO05D006774 2.1e-307 1058.9 781 70.2
HPP92_025553 Vanilla planifolia HOM05D002281 ORTHO05D006774 8.2e-267 924.1 875 60.1
Sc16g0010030 Simmondsia chinensis HOM05D002281 ORTHO05D006774 7.4e-260 901.0 628 75.0
SEGI_16679 Sequoiadendron giganteum HOM05D002281 ORTHO05D006774 1.1e-247 860.5 857 53.8
Hma1.2p1_0123F.1_g058110 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 2.1e-238 829.7 559 75.5
Sabra19G0037700 Salix brachista HOM05D002281 ORTHO05D006774 1.4e-234 817.0 614 73.0
AagrBONN_evm.TU.Sc2ySwM_368.3437 Anthoceros agrestis HOM05D002281 ORTHO05D006774 1.7e-232 810.1 863 50.9
CiPaw.07G076800 Carya illinoinensis HOM05D002281 ORTHO05D006774 5.2e-229 798.5 473 82.0
Cc09_g03090 Coffea canephora HOM05D002281 ORTHO05D006774 8.9e-221 771.2 495 78.0
Mapoly0031s0123 Marchantia polymorpha HOM05D002281 ORTHO05D006774 1.3e-216 757.3 824 49.6
Hma1.2p1_0123F.1_g058100 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 2.4e-210 736.5 526 72.4
ClCG03G011380 Citrullus lanatus HOM05D002281 ORTHO05D006774 1.5e-204 717.2 510 77.5
Haze_04484 Corylus avellana HOM05D002281 ORTHO05D006774 1.4e-189 667.5 576 65.1
CDE02G2074 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 6.7e-184 648.7 482 71.6
Pp3c1_8170 Physcomitrium patens HOM05D002281 ORTHO05D006774 2.5e-183 646.7 822 44.3
SMO367G1266 Selaginella moellendorffii HOM05D002281 ORTHO05D006774 3.3e-183 646.4 838 41.9
vmacro19967 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 1.2e-164 584.7 463 71.3
Rhsim05G0169000 Rhododendron simsii HOM05D002281 ORTHO05D006774 1.2e-148 531.6 419 69.2
CBR_g7996 Chara braunii HOM05D002281 ORTHO05D006774 4.2e-146 523.1 673 41.6
Cc00_g32050 Coffea canephora HOM05D002281 ORTHO05D006774 4.1e-133 479.9 361 72.0
Cpa.g.sc51.36 Carica papaya HOM05D002281 ORTHO05D006774 2.6e-95 354.4 311 68.2
Cpa.g.sc51.34 Carica papaya HOM05D002281 ORTHO05D006774 1.1e-93 349.0 256 68.0
CDE02G1511 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 1.2e-92 345.5 201 81.1
QL03p033056 Quercus lobata HOM05D002281 ORTHO05D006774 2.1e-92 344.7 210 82.4
ClCG03G011350 Citrullus lanatus HOM05D002281 ORTHO05D006774 1.2e-87 328.9 245 67.8
vmacro19969 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 2.2e-86 324.7 227 68.3
Haze_04483 Corylus avellana HOM05D002281 ORTHO05D006774 1.6e-84 318.5 243 67.9
CiPaw.07G076900 Carya illinoinensis HOM05D002281 ORTHO05D006774 3.0e-83 314.3 198 77.3
Actinidia39975 Actinidia chinensis HOM05D002281 ORTHO05D006774 4.4e-79 300.4 194 76.3
Ah.13g065840 Amaranthus hybridus HOM05D002281 ORTHO05D006774 5.8e-79 300.1 224 66.5
Hma1.2p1_0123F.1_g058090 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 5.8e-79 300.1 220 67.7
Actinidia39977 Actinidia chinensis HOM05D002281 ORTHO05D006774 7.9e-52 209.9 130 76.9
FAN14G5351 Fragaria x ananassa HOM05D002281 ORTHO05D006774 1.4e-48 199.1 161 67.7
ClCG03G011370 Citrullus lanatus HOM05D002281 ORTHO05D006774 1.7e-46 192.2 111 83.8
vmacro19968 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 1.4e-45 189.1 113 77.9
Hma1.2p1_0463F.1_g158160 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 9.4e-45 186.4 128 67.2
AL685U10020 Arabidopsis lyrata HOM05D002281 ORTHO05D006774 4.6e-44 184.1 120 76.7
Sopen01g022760 Solanum pennellii HOM05D002281 ORTHO05D006774 1.0e-35 156.4 210 46.2
QL03p032920 Quercus lobata HOM05D002281 ORTHO05D006774 3.0e-35 154.8 106 72.6
QL03p033074 Quercus lobata HOM05D002281 ORTHO05D006774 1.1e-34 152.9 100 77.0
Cpa.g.sc51.35 Carica papaya HOM05D002281 ORTHO05D006774 2.4e-32 145.2 94 75.5
Solyc01g015200.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 1.4e-19 102.8 168 39.3
Solyc01g016930.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 3.0e-19 101.7 82 64.6
RcHm_v2.0_Chr1g0330901 Rosa chinensis HOM05D002281 ORTHO05D006774 2.0e-18 99.0 53 88.7
Solyc01g013970.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 4.4e-18 97.8 89 59.6
CDE08G0752 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 1.6e-15 89.4 63 68.3
Solyc01g014000.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 1.6e-15 89.4 73 61.6
TPR.G31597 Trifolium pratense HOM05D002281 ORTHO05D006774 1.6e-15 89.4 76 59.2
Solyc01g016920.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 7.7e-15 87.0 53 79.2
Actinidia39976 Actinidia chinensis HOM05D002281 ORTHO05D006774 6.5e-14 84.0 60 78.3
Solyc01g016870.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 2.7e-12 78.6 49 77.6
Os10g0460900 Oryza sativa ssp. japonica HOM05D006403 ORTHO05D008130 1.8e-11 75.9 71 52.1
Os10g0461100 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 1.8e-11 75.9 71 52.1
BolC1t05755H Brassica oleracea HOM05D002281 ORTHO05D006774 2.3e-11 75.5 49 75.5
MELO3C009563.2 Cucumis melo HOM05D006596 ORTHO05D008497 3.7e-09 68.2 249 24.9
ClCG10G018100 Citrullus lanatus HOM05D006596 ORTHO05D008497 6.3e-09 67.4 223 25.1
BraA01t04528Z Brassica rapa HOM05D002281 ORTHO05D006774 2.7e-07 62.0 49 63.3
BolC1t05758H Brassica oleracea HOM05D002281 ORTHO05D006774 3.5e-07 61.6 42 69.0


User provided reference genes

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