Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.L001932 Phaseolus vulgaris HOM05D000189 ORTHO05D307625 4.3e-36 154.1 74 100.0
Glyma.08G302000 Glycine max HOM05D000189 ORTHO05D000474 6.0e-14 80.5 47 89.4
arahy.Tifrunner.gnm1.ann1.4IWI24 Arachis hypogaea HOM05D000189 ORTHO05D000474 3.9e-13 77.8 47 85.1
arahy.Tifrunner.gnm1.ann1.CKNT4J Arachis hypogaea HOM05D000189 ORTHO05D000474 3.9e-13 77.8 47 85.1
Glyma.18G119000 Glycine max HOM05D000189 ORTHO05D000474 3.9e-13 77.8 47 87.2
Phvul.006G030000 Phaseolus vulgaris HOM05D000189 ORTHO05D000474 6.7e-13 77.0 47 85.1
Medtr5g089900 Medicago truncatula HOM05D000189 ORTHO05D000474 8.7e-13 76.6 47 80.9
Psat2g019360 Pisum sativum HOM05D000189 ORTHO05D000474 1.1e-12 76.3 47 83.0
CiPaw.14G114000 Carya illinoinensis HOM05D000189 ORTHO05D000474 1.5e-12 75.9 47 83.0
CiPaw.13G152000 Carya illinoinensis HOM05D000189 ORTHO05D000474 2.5e-12 75.1 47 80.9
Glyma.14G034200 Glycine max HOM05D000189 ORTHO05D000474 3.3e-12 74.7 47 80.9
Lj6g0022482 Lotus japonicus HOM05D000189 ORTHO05D000474 3.3e-12 74.7 47 83.0
Phvul.008G200300 Phaseolus vulgaris HOM05D000189 ORTHO05D000474 3.3e-12 74.7 47 80.9
VMungo0647G1503 Vigna mungo HOM05D000189 ORTHO05D000474 3.3e-12 74.7 47 80.9
FvH4_3g28000 Fragaria vesca HOM05D000189 ORTHO05D000474 9.6e-12 73.2 47 78.7
FAN11G3180 Fragaria x ananassa HOM05D000189 ORTHO05D000474 9.6e-12 73.2 47 78.7
FAN16G1546 Fragaria x ananassa HOM05D000189 ORTHO05D000474 9.6e-12 73.2 47 78.7
FAN21G3014 Fragaria x ananassa HOM05D000189 ORTHO05D000474 9.6e-12 73.2 47 78.7
FAN25G0874 Fragaria x ananassa HOM05D000189 ORTHO05D000474 9.6e-12 73.2 47 78.7
Glyma.02G280400 Glycine max HOM05D000189 ORTHO05D000474 9.6e-12 73.2 47 80.9
Prupe.4G268000 Prunus persica HOM05D000189 ORTHO05D000474 9.6e-12 73.2 47 78.7
RcHm_v2.0_Chr5g0050701 Rosa chinensis HOM05D000189 ORTHO05D000474 9.6e-12 73.2 47 78.7
Aqoxy2G00355 Aquilegia oxysepala HOM05D000189 ORTHO05D000474 1.3e-11 72.8 47 78.7
Lalb_Chr17g0347991 Lupinus albus HOM05D000189 ORTHO05D000474 1.3e-11 72.8 47 78.7
CANSAT54G0830 Cannabis sativa HOM05D000189 ORTHO05D000474 1.6e-11 72.4 47 78.7
LjContig00049g0011114 Lotus japonicus HOM05D000189 ORTHO05D000474 1.6e-11 72.4 47 78.7
MD03G1167700 Malus domestica HOM05D000189 ORTHO05D000474 2.1e-11 72.0 47 76.6
QL01p017422 Quercus lobata HOM05D000189 ORTHO05D000474 2.1e-11 72.0 47 78.7
vmacro04020 Vaccinium macrocarpon HOM05D000189 ORTHO05D000474 2.1e-11 72.0 47 76.6
Cfa009844 Carpinus fangiana HOM05D000189 ORTHO05D000474 3.7e-11 71.2 47 78.7
Haze_23217 Corylus avellana HOM05D000189 ORTHO05D000474 3.7e-11 71.2 47 78.7
FAN25G0899 Fragaria x ananassa HOM05D000189 ORTHO05D000474 3.7e-11 71.2 47 76.6
Lalb_Chr10g0106331 Lupinus albus HOM05D000189 ORTHO05D000474 3.7e-11 71.2 47 76.6
MD11G1186800 Malus domestica HOM05D000189 ORTHO05D000474 3.7e-11 71.2 47 76.6
Oeu030628.1 Olea europaea HOM05D000189 ORTHO05D000474 3.7e-11 71.2 47 76.6
Psat5g192920 Pisum sativum HOM05D000189 ORTHO05D000474 3.7e-11 71.2 47 78.7
ClCG03G012690 Citrullus lanatus HOM05D000189 ORTHO05D000474 4.8e-11 70.9 47 74.5
Oeu043282.1 Olea europaea HOM05D000189 ORTHO05D000474 6.2e-11 70.5 47 76.6
TPR.G8490 Trifolium pratense HOM05D000189 ORTHO05D000474 6.2e-11 70.5 47 78.7
Dinv36181 Davidia involucrata HOM05D000189 ORTHO05D000474 8.1e-11 70.1 47 76.6
FAN25G0122 Fragaria x ananassa HOM05D000001 ORTHO05D000003 8.1e-11 70.1 47 74.5
Sed0002027 Sechium edule HOM05D000189 ORTHO05D000474 8.1e-11 70.1 47 74.5
TAR636G0422 Trochodendron aralioides HOM05D000189 ORTHO05D000474 8.1e-11 70.1 47 76.6
Ca_06219_v3 Cicer arietinum L. HOM05D000189 ORTHO05D000474 1.1e-10 69.7 47 76.6
Ca_25927_v3 Cicer arietinum L. HOM05D000189 ORTHO05D000474 1.8e-10 68.9 47 78.7
Dinv05061 Davidia involucrata HOM05D000189 ORTHO05D000474 1.8e-10 68.9 47 74.5
TWI79G0993 Tripterygium wilfordii HOM05D000189 ORTHO05D000474 1.8e-10 68.9 64 65.6
Hma1.2p1_0758F.1_g213525 Hydrangea macrophylla HOM05D000189 ORTHO05D000474 2.4e-10 68.6 47 72.3
Cpa.g.sc157.70 Carica papaya HOM05D000189 ORTHO05D000474 3.1e-10 68.2 48 75.0
Lalb_Chr04g0249161 Lupinus albus HOM05D000189 ORTHO05D000474 3.1e-10 68.2 47 72.3
Gohir.A08G009900 Gossypium hirsutum HOM05D000189 ORTHO05D000474 4.0e-10 67.8 47 76.6
Gohir.D08G020000 Gossypium hirsutum HOM05D000189 ORTHO05D000474 4.0e-10 67.8 47 76.6
Gorai.004G014600 Gossypium raimondii HOM05D000189 ORTHO05D000474 4.0e-10 67.8 47 76.6
TPR.G19343 Trifolium pratense HOM05D000189 ORTHO05D000474 4.0e-10 67.8 47 78.7
CsaV3_1G043270 Cucumis sativus L. HOM05D000189 ORTHO05D000474 5.3e-10 67.4 47 70.2
TWI31G0708 Tripterygium wilfordii HOM05D000189 ORTHO05D000474 5.3e-10 67.4 47 76.6
CSS0024064 Camellia sinensis var. sinensis HOM05D000189 ORTHO05D000474 6.9e-10 67.0 47 72.3
SalBow6G3649 Salvia bowleyana HOM05D000189 ORTHO05D000474 6.9e-10 67.0 47 74.5
Manes.02G140700 Manihot esculenta HOM05D000189 ORTHO05D000474 9.0e-10 66.6 47 76.6
Rhsim13G0211900 Rhododendron simsii HOM05D000189 ORTHO05D000474 9.0e-10 66.6 47 70.2
Atru.chr3.2784 Acer truncatum HOM05D000189 ORTHO05D000474 1.2e-09 66.2 47 74.5
CAN.G1850.2 Capsicum annuum HOM05D000189 ORTHO05D000474 1.2e-09 66.2 47 72.3
COL.COLO4_33274 Corchorus olitorius HOM05D000189 ORTHO05D000474 1.2e-09 66.2 47 76.6
Gohir.A09G109800 Gossypium hirsutum HOM05D000189 ORTHO05D000474 1.2e-09 66.2 47 76.6
Gohir.D09G106300 Gossypium hirsutum HOM05D000189 ORTHO05D000474 1.2e-09 66.2 47 76.6
Gorai.006G123800 Gossypium raimondii HOM05D000189 ORTHO05D000474 1.2e-09 66.2 47 76.6
Nitab4.5_0004018g0090 Nicotiana tabacum HOM05D000189 ORTHO05D000474 1.2e-09 66.2 47 72.3
Potri.009G071800 Populus trichocarpa HOM05D000189 ORTHO05D000474 1.2e-09 66.2 47 74.5
Rhsim01G0194500 Rhododendron simsii HOM05D000189 ORTHO05D000474 1.2e-09 66.2 47 72.3
SGA_v2.0_scaffold3G01467 Striga asiatica HOM05D000189 ORTHO05D000474 1.2e-09 66.2 47 70.2
Thecc.09G250100 Theobroma cacao HOM05D000189 ORTHO05D000474 1.2e-09 66.2 47 76.6
Lj1A288T38 Lonicera japonica HOM05D000189 ORTHO05D000474 1.5e-09 65.9 47 70.2
Manes.01G180100 Manihot esculenta HOM05D000189 ORTHO05D000474 1.5e-09 65.9 47 72.3
PGR102G3135 Punica granatum HOM05D000189 ORTHO05D000474 1.5e-09 65.9 47 72.3
MELO3C015132.2 Cucumis melo HOM05D000189 ORTHO05D000474 2.0e-09 65.5 47 68.1
Eucgr.J00702 Eucalyptus grandis HOM05D000189 ORTHO05D000474 2.0e-09 65.5 47 68.1
Potri.001G276900 Populus trichocarpa HOM05D000189 ORTHO05D000474 2.0e-09 65.5 47 74.5
Sabra09G0054100 Salix brachista HOM05D000189 ORTHO05D000474 2.0e-09 65.5 47 72.3
vmacro14274 Vaccinium macrocarpon HOM05D000189 ORTHO05D000474 2.6e-09 65.1 47 70.2
DCAR_023847 Daucus carota HOM05D000189 ORTHO05D000474 4.5e-09 64.3 46 71.7
Duzib150G0557 Durio zibethinus HOM05D000189 ORTHO05D000474 4.5e-09 64.3 47 76.6
Nitab4.5_0002726g0050 Nicotiana tabacum HOM05D000189 ORTHO05D000474 4.5e-09 64.3 47 70.2
Solyc11g065120.3 Solanum lycopersicum HOM05D000189 ORTHO05D000474 4.5e-09 64.3 47 70.2
Sopen11g024860 Solanum pennellii HOM05D000189 ORTHO05D000474 4.5e-09 64.3 47 70.2
ECA238G4100 Erigeron canadensis HOM05D000189 ORTHO05D000474 5.8e-09 63.9 47 66.0
Peaxi162Scf00004g04116 Petunia axillaris HOM05D000189 ORTHO05D000474 5.8e-09 63.9 47 70.2
THA.LOC104811189 Tarenaya hassleriana HOM05D000189 ORTHO05D000474 5.8e-09 63.9 47 70.2
TAR369G0295 Trochodendron aralioides HOM05D000189 ORTHO05D000474 7.6e-09 63.5 44 72.7
Cc01_g05540 Coffea canephora HOM05D000189 ORTHO05D000474 1.0e-08 63.2 43 76.7
Sabra16G0171000 Salix brachista HOM05D000189 ORTHO05D000474 1.3e-08 62.8 47 72.3
Aa31LG3G14880 Aethionema arabicum HOM05D000189 ORTHO05D000474 1.7e-08 62.4 47 68.1
Duzib170G1060 Durio zibethinus HOM05D000189 ORTHO05D000474 1.7e-08 62.4 47 72.3
SGA_v2.0_scaffold29G12263 Striga asiatica HOM05D000189 ORTHO05D000474 1.7e-08 62.4 48 66.7
TWI75G1833 Tripterygium wilfordii HOM05D000189 ORTHO05D000474 1.7e-08 62.4 47 74.5
AT5G12350 Arabidopsis thaliana HOM05D000189 ORTHO05D000474 2.2e-08 62.0 47 68.1
CSS0004607 Camellia sinensis var. sinensis HOM05D000189 ORTHO05D000474 2.2e-08 62.0 47 66.0
CSS0035151 Camellia sinensis var. sinensis HOM05D000189 ORTHO05D000474 2.2e-08 62.0 47 66.0
AL6G23150 Arabidopsis lyrata HOM05D000189 ORTHO05D000474 2.9e-08 61.6 47 68.1
AL6G30910 Arabidopsis lyrata HOM05D000189 ORTHO05D000474 2.9e-08 61.6 47 66.0
AT5G19420 Arabidopsis thaliana HOM05D000189 ORTHO05D000474 2.9e-08 61.6 47 66.0
CSS0018764 Camellia sinensis var. sinensis HOM05D000189 ORTHO05D000474 2.9e-08 61.6 47 68.1
CSS0032360 Camellia sinensis var. sinensis HOM05D000189 ORTHO05D000474 2.9e-08 61.6 47 68.1
A10p20280 Brassica napus HOM05D000189 ORTHO05D000474 3.8e-08 61.2 47 63.8
BraA10t44099Z Brassica rapa HOM05D000189 ORTHO05D000474 3.8e-08 61.2 47 63.8
Os01g0952300 Oryza sativa ssp. japonica HOM05D000189 ORTHO05D000474 4.9e-08 60.8 47 63.8
Zm00001eb140790 Zea mays HOM05D000189 ORTHO05D000474 4.9e-08 60.8 47 63.8
Zm00001eb362840 Zea mays HOM05D000189 ORTHO05D000474 4.9e-08 60.8 47 63.8
Carub.0006s1086 Capsella rubella HOM05D000189 ORTHO05D000474 6.5e-08 60.5 47 66.0
CARHR200760 Cardamine hirsuta HOM05D000189 ORTHO05D000474 6.5e-08 60.5 47 66.0
ECA240G1353 Erigeron canadensis HOM05D000189 ORTHO05D000474 6.5e-08 60.5 47 66.0
Thhalv10012507m.g Eutrema salsugineum HOM05D000189 ORTHO05D000474 6.5e-08 60.5 47 63.8
Nn7g36659 Nelumbo nucifera HOM05D000189 ORTHO05D000474 6.5e-08 60.5 44 75.0
THA.LOC104824622 Tarenaya hassleriana HOM05D000189 ORTHO05D000474 6.5e-08 60.5 47 68.1
Carub.0006s1776 Capsella rubella HOM05D000189 ORTHO05D000474 8.4e-08 60.1 47 63.8
Ciclev10014100m.g Citrus clementina HOM05D000189 ORTHO05D000474 1.1e-07 59.7 47 68.1
A02p01490 Brassica napus HOM05D000189 ORTHO05D000474 1.4e-07 59.3 47 63.8
C09p64540 Brassica napus HOM05D000189 ORTHO05D000474 1.4e-07 59.3 47 61.7
BraA02t05130Z Brassica rapa HOM05D000189 ORTHO05D000474 1.4e-07 59.3 47 63.8
CARHR193530 Cardamine hirsuta HOM05D000189 ORTHO05D000474 1.4e-07 59.3 47 61.7
Thhalv10012520m.g Eutrema salsugineum HOM05D000189 ORTHO05D000474 1.4e-07 59.3 47 63.8
GSVIVG01037259001 Vitis vinifera HOM05D000189 ORTHO05D000474 1.4e-07 59.3 48 68.8
Lsat_1_v5_gn_2_33921 Lactuca sativa HOM05D000189 ORTHO05D000474 1.9e-07 58.9 47 61.7
Sp6g24990 Schrenkiella parvula HOM05D000189 ORTHO05D000474 1.9e-07 58.9 47 63.8
HanXRQChr14g0432381 Helianthus annuus HOM05D000189 ORTHO05D000474 2.5e-07 58.5 46 63.0
Lsat_1_v5_gn_3_110861 Lactuca sativa HOM05D000189 ORTHO05D000474 2.5e-07 58.5 47 61.7
Nn2g14862 Nelumbo nucifera HOM05D000189 ORTHO05D000474 2.5e-07 58.5 44 70.5
THA.LOC104799120 Tarenaya hassleriana HOM05D000189 ORTHO05D000474 2.5e-07 58.5 48 66.7
BcaC04g24229 Brassica carinata HOM05D000189 ORTHO05D000474 3.2e-07 58.2 47 59.6
C09p56880 Brassica napus HOM05D000189 ORTHO05D000474 3.2e-07 58.2 47 59.6
BolC9t58542H Brassica oleracea HOM05D000189 ORTHO05D000474 3.2e-07 58.2 47 59.6
Migut.N02367 Erythranthe guttata HOM05D000189 ORTHO05D000474 3.2e-07 58.2 47 72.3
Sp6g31290 Schrenkiella parvula HOM05D000189 ORTHO05D000474 3.2e-07 58.2 47 61.7
GSVIVG01013496001 Vitis vinifera HOM05D000189 ORTHO05D000474 3.2e-07 58.2 47 63.8
BolC9t59288H Brassica oleracea HOM05D000189 ORTHO05D000474 4.2e-07 57.8 47 61.7
PGR119G2042 Punica granatum HOM05D000189 ORTHO05D000474 4.2e-07 57.8 47 72.3
Oeu061288.1 Olea europaea HOM05D000189 ORTHO05D000474 5.5e-07 57.4 47 61.7
Nitab4.5_0001290g0050 Nicotiana tabacum HOM05D000189 ORTHO05D000474 7.1e-07 57.0 47 63.8
BcaB01g05151 Brassica carinata HOM05D000189 ORTHO05D000474 1.2e-06 56.2 47 63.8
BcaNung03621 Brassica carinata HOM05D000189 ORTHO05D000474 1.2e-06 56.2 47 63.8
A03p09470 Brassica napus HOM05D000189 ORTHO05D000474 1.2e-06 56.2 47 63.8
C03p11050 Brassica napus HOM05D000189 ORTHO05D000474 1.2e-06 56.2 47 63.8
BolC3t13574H Brassica oleracea HOM05D000189 ORTHO05D000474 1.2e-06 56.2 47 63.8
BraA03t10265Z Brassica rapa HOM05D000189 ORTHO05D000474 1.2e-06 56.2 47 63.8
DCAR_029990 Daucus carota HOM05D000189 ORTHO05D000474 1.2e-06 56.2 47 59.6
HanXRQChr03g0090141 Helianthus annuus HOM05D000189 ORTHO05D000474 1.2e-06 56.2 47 59.6
Sc16g0011140 Simmondsia chinensis HOM05D000189 ORTHO05D000474 1.2e-06 56.2 41 73.2
A10p25470 Brassica napus HOM05D000189 ORTHO05D000474 1.6e-06 55.8 47 59.6
BraA10t44611Z Brassica rapa HOM05D000189 ORTHO05D000474 1.6e-06 55.8 47 59.6
Nitab4.5_0002310g0030 Nicotiana tabacum HOM05D000189 ORTHO05D000474 1.6e-06 55.8 47 63.8
Solyc12g099740.2 Solanum lycopersicum HOM05D000189 ORTHO05D000474 1.6e-06 55.8 47 61.7
Sopen12g034380 Solanum pennellii HOM05D000189 ORTHO05D000474 1.6e-06 55.8 47 61.7
HanXRQChr13g0418491 Helianthus annuus HOM05D000189 ORTHO05D000474 2.7e-06 55.1 47 59.6
ATR0745G073 Amborella trichopoda HOM05D000189 ORTHO05D000474 3.5e-06 54.7 48 60.4
CAN.G1703.11 Capsicum annuum HOM05D002048 ORTHO05D002146 3.5e-06 54.7 47 59.6
CAN.G2107.1 Capsicum annuum HOM05D000189 ORTHO05D000474 3.5e-06 54.7 47 59.6
Os05g0384800 Oryza sativa ssp. japonica HOM05D000189 ORTHO05D000474 3.5e-06 54.7 43 65.1
BcaB01g04863 Brassica carinata HOM05D000189 ORTHO05D000474 6.0e-06 53.9 47 61.7


User provided reference genes

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