Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.L001885 Phaseolus vulgaris HOM05D002705 ORTHO05D004955 0.0e+00 2113.2 1083 100.0
Glyma.20G198400 Glycine max HOM05D002705 ORTHO05D004955 0.0e+00 1775.4 1079 85.0
TPR.G18561 Trifolium pratense HOM05D002705 ORTHO05D004955 0.0e+00 1558.5 1156 71.2
Lj5g0005183 Lotus japonicus HOM05D002705 ORTHO05D004955 0.0e+00 1548.1 1088 74.6
Medtr1g072800 Medicago truncatula HOM05D002705 ORTHO05D004955 0.0e+00 1545.8 1208 68.2
Psat6g140240 Pisum sativum HOM05D002705 ORTHO05D004955 0.0e+00 1538.1 1201 67.9
Lalb_Chr06g0169611 Lupinus albus HOM05D002705 ORTHO05D004955 0.0e+00 1515.4 1104 72.6
QL09p027408 Quercus lobata HOM05D002705 ORTHO05D004955 0.0e+00 1324.3 1127 64.7
Cfa013602 Carpinus fangiana HOM05D002705 ORTHO05D004955 0.0e+00 1305.4 1091 64.5
CiPaw.07G183200 Carya illinoinensis HOM05D002705 ORTHO05D004955 0.0e+00 1282.3 989 68.4
Thecc.03G145700 Theobroma cacao HOM05D002705 ORTHO05D004955 0.0e+00 1268.8 1082 62.8
Prupe.2G270600 Prunus persica HOM05D002705 ORTHO05D004955 0.0e+00 1266.9 1088 62.8
Ciclev10033740m.g Citrus clementina HOM05D002705 ORTHO05D004955 0.0e+00 1261.1 1089 62.9
Potri.012G114100 Populus trichocarpa HOM05D002705 ORTHO05D004955 0.0e+00 1259.2 1076 63.2
Atru.chr6.2006 Acer truncatum HOM05D002705 ORTHO05D004955 0.0e+00 1258.0 1094 62.3
Atru.chr6.1980 Acer truncatum HOM05D002705 ORTHO05D004955 0.0e+00 1257.3 1094 62.3
Dinv34540 Davidia involucrata HOM05D002705 ORTHO05D004955 0.0e+00 1250.0 962 68.3
RcHm_v2.0_Chr1g0373301 Rosa chinensis HOM05D002705 ORTHO05D004955 0.0e+00 1244.6 1077 63.5
Actinidia13623 Actinidia chinensis HOM05D002705 ORTHO05D004955 0.0e+00 1243.4 967 67.7
TAR636G2282 Trochodendron aralioides HOM05D002705 ORTHO05D004955 0.0e+00 1235.3 1095 61.7
Sabra12G0083000 Salix brachista HOM05D002705 ORTHO05D004955 0.0e+00 1233.8 1102 61.4
FvH4_7g26710 Fragaria vesca HOM05D002705 ORTHO05D004955 0.0e+00 1229.5 1074 62.3
TWI39G0103 Tripterygium wilfordii HOM05D002705 ORTHO05D004955 0.0e+00 1220.3 1101 61.4
FAN03G2179 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1218.4 1082 61.9
FAN06G0843 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1213.7 1081 61.5
Haze_22224 Corylus avellana HOM05D002705 ORTHO05D004955 0.0e+00 1199.9 1147 59.4
Gorai.006G273800 Gossypium raimondii HOM05D002705 ORTHO05D004955 0.0e+00 1198.0 1081 59.9
GSVIVG01013853001 Vitis vinifera HOM05D002705 ORTHO05D004955 0.0e+00 1196.0 903 68.7
Gohir.D09G249500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 0.0e+00 1189.1 1081 59.8
MELO3C005443.2 Cucumis melo HOM05D002705 ORTHO05D004955 0.0e+00 1186.8 1088 59.9
CsaV3_5G005160 Cucumis sativus L. HOM05D002705 ORTHO05D004955 0.0e+00 1175.6 1088 58.9
Sed0003657 Sechium edule HOM05D002705 ORTHO05D004955 0.0e+00 1175.6 1086 58.4
Gohir.A09G248500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 0.0e+00 1174.5 1083 58.4
Rhsim03G0158700 Rhododendron simsii HOM05D002705 ORTHO05D004955 0.0e+00 1174.1 1159 56.4
Nn1g00769 Nelumbo nucifera HOM05D002705 ORTHO05D004955 0.0e+00 1173.7 1114 58.3
DCAR_014643 Daucus carota HOM05D002705 ORTHO05D004955 0.0e+00 1172.1 966 65.2
MD07G1244800 Malus domestica HOM05D002705 ORTHO05D004955 0.0e+00 1167.1 1079 60.1
ClCG01G004930 Citrullus lanatus HOM05D002705 ORTHO05D004955 0.0e+00 1160.2 1094 57.9
THA.LOC104825051 Tarenaya hassleriana HOM05D002705 ORTHO05D004955 0.0e+00 1152.1 1100 57.6
MD07G1243100 Malus domestica HOM05D002705 ORTHO05D004955 0.0e+00 1151.0 874 68.4
Carub.0007s1591 Capsella rubella HOM05D002705 ORTHO05D004955 0.0e+00 1150.2 1106 57.7
Manes.14G040900 Manihot esculenta HOM05D002705 ORTHO05D004955 0.0e+00 1147.1 823 71.1
vmacro06848 Vaccinium macrocarpon HOM05D002705 ORTHO05D004955 0.0e+00 1146.3 1049 59.0
Cc00_g24340 Coffea canephora HOM05D002705 ORTHO05D004955 0.0e+00 1144.0 1087 58.1
Aqoxy7G00864 Aquilegia oxysepala HOM05D002705 ORTHO05D004955 0.0e+00 1142.1 992 61.6
AL7G28030 Arabidopsis lyrata HOM05D002705 ORTHO05D004955 0.0e+00 1141.7 1103 57.1
PGR142G4199 Punica granatum HOM05D002705 ORTHO05D004955 0.0e+00 1141.7 1109 56.6
SGA_v2.0_scaffold352G49687 Striga asiatica HOM05D002705 ORTHO05D004955 0.0e+00 1140.6 1124 56.8
AT4G25120 Arabidopsis thaliana HOM05D002705 ORTHO05D004955 0.0e+00 1137.9 1108 57.0
Sopen03g024730 Solanum pennellii HOM05D002705 ORTHO05D004955 0.0e+00 1137.9 1159 55.5
Lj8C49G2 Lonicera japonica HOM05D002705 ORTHO05D004955 0.0e+00 1137.5 1035 60.5
Eucgr.K00116 Eucalyptus grandis HOM05D002705 ORTHO05D004955 0.0e+00 1136.3 863 66.7
Aa31LG7G10510 Aethionema arabicum HOM05D002705 ORTHO05D004955 0.0e+00 1134.0 1098 57.1
Thhalv10024258m.g Eutrema salsugineum HOM05D002705 ORTHO05D004955 0.0e+00 1132.1 1106 57.0
ECA232G4016 Erigeron canadensis HOM05D002705 ORTHO05D004955 0.0e+00 1131.7 1003 61.1
FAN01G0508 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1130.9 1090 58.4
COL.COLO4_37311 Corchorus olitorius HOM05D002705 ORTHO05D004955 0.0e+00 1129.4 1039 59.9
HanXRQChr15g0493601 Helianthus annuus HOM05D002705 ORTHO05D004955 0.0e+00 1125.2 961 62.9
PSO675G1384 Papaver somniferum HOM05D002705 ORTHO05D004955 0.0e+00 1119.4 864 67.7
BcaC06g32837 Brassica carinata HOM05D002705 ORTHO05D004955 0.0e+00 1117.1 1133 54.7
FAN10G0038 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1114.0 1155 55.6
Migut.F01210 Erythranthe guttata HOM05D002705 ORTHO05D004955 0.0e+00 1112.1 1120 55.5
Sp7g23120 Schrenkiella parvula HOM05D002705 ORTHO05D004955 0.0e+00 1112.1 894 64.3
SalBow2G1886 Salvia bowleyana HOM05D002705 ORTHO05D004955 0.0e+00 1085.5 1031 58.7
MD07G1245700 Malus domestica HOM05D002705 ORTHO05D004955 2.8e-309 1065.4 835 66.9
EL10As1g23078 Beta vulgaris HOM05D002705 ORTHO05D004955 8.1e-309 1063.9 1107 53.5
Os07g0492100 Oryza sativa ssp. japonica HOM05D002705 ORTHO05D004955 5.8e-307 1057.7 888 61.9
Lsat_1_v5_gn_0_9880 Lactuca sativa HOM05D002705 ORTHO05D004955 3.2e-305 1052.0 986 59.6
A03p55770 Brassica napus HOM05D002705 ORTHO05D004955 4.6e-304 1048.1 1050 56.1
arahy.Tifrunner.gnm1.ann1.WYM0Y2 Arachis hypogaea HOM05D002705 ORTHO05D004955 1.1e-302 1043.5 1078 55.8
BraA03t14645Z Brassica rapa HOM05D002705 ORTHO05D004955 1.5e-302 1043.1 1148 52.5
ATR0665G329 Amborella trichopoda HOM05D002705 ORTHO05D004955 3.3e-302 1042.0 1024 56.7
arahy.Tifrunner.gnm1.ann1.ZG0SUW Arachis hypogaea HOM05D002705 ORTHO05D004955 1.3e-301 1040.0 1078 55.7
BolC7t45891H Brassica oleracea HOM05D002705 ORTHO05D004955 1.3e-301 1040.0 1037 56.2
Nitab4.5_0010058g0010 Nicotiana tabacum HOM05D002705 ORTHO05D004955 3.6e-301 1038.5 1137 53.0
Hma1.2p1_2119F.1_g314370 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 1.4e-300 1036.6 820 67.3
C07p54050 Brassica napus HOM05D002705 ORTHO05D004955 1.8e-300 1036.2 1105 54.0
Cpa.g.sc13.232 Carica papaya HOM05D002705 ORTHO05D004955 4.0e-300 1035.0 959 60.0
Solyc03g093850.2 Solanum lycopersicum HOM05D002705 ORTHO05D004955 8.1e-293 1010.7 999 56.7
Ah.02g115400 Amaranthus hybridus HOM05D002705 ORTHO05D004955 2.4e-289 999.2 959 56.4
Oeu044165.1 Olea europaea HOM05D002705 ORTHO05D004955 7.1e-289 997.7 782 67.3
HPP92_003517 Vanilla planifolia HOM05D002705 ORTHO05D004955 2.9e-282 975.7 1023 53.1
CANSAT56G1220 Cannabis sativa HOM05D002705 ORTHO05D004955 6.5e-282 974.5 872 61.5
MD07G1243600 Malus domestica HOM05D002705 ORTHO05D004955 2.5e-278 962.6 1079 53.1
Ca_09785_v3 Cicer arietinum L. HOM05D002705 ORTHO05D004955 7.4e-278 961.1 713 72.8
MSTRG.8400 Avicennia marina HOM05D002705 ORTHO05D004955 4.1e-276 955.3 757 64.9
Nitab4.5_0000103g0340 Nicotiana tabacum HOM05D002705 ORTHO05D004955 4.3e-270 935.3 765 63.5
MD07G1244300 Malus domestica HOM05D002705 ORTHO05D004955 5.5e-265 918.3 747 66.5
Mapoly0067s0049 Marchantia polymorpha HOM05D002705 ORTHO05D004955 1.2e-248 864.0 899 50.8
unitig_578.g16613 Utricularia gibba HOM05D002705 ORTHO05D004955 4.8e-245 852.0 1082 48.2
Pp3c1_29170 Physcomitrium patens HOM05D002705 ORTHO05D004955 1.7e-242 843.6 906 50.2
AUR62042388 Chenopodium quinoa HOM05D002705 ORTHO05D004955 1.5e-238 830.5 1120 45.4
AagrBONN_evm.TU.Sc2ySwM_117.709 Anthoceros agrestis HOM05D002705 ORTHO05D004955 3.1e-236 822.8 971 47.5
SMO263G0015 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 1.9e-233 813.5 858 50.9
Peaxi162Scf00073g01729 Petunia axillaris HOM05D002705 ORTHO05D004955 9.8e-230 801.2 594 68.7
SMO118G0423 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 4.7e-224 782.3 860 50.0
MD07G1241600 Malus domestica HOM05D002705 ORTHO05D004955 7.0e-212 741.9 579 66.3
CARHR232510 Cardamine hirsuta HOM05D002705 ORTHO05D004955 5.2e-199 699.1 567 62.8
Hma1.2p1_2119F.1_g314360 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 2.7e-187 660.2 869 47.5
CSS0042603 Camellia sinensis var. sinensis HOM05D002705 ORTHO05D004955 1.1e-183 648.3 587 61.3
Sc11g0004220 Simmondsia chinensis HOM05D002705 ORTHO05D004955 1.1e-180 638.3 495 63.6
CAN.G408.1 Capsicum annuum HOM05D002705 ORTHO05D004955 5.5e-156 556.2 415 68.0
Nn1g00770 Nelumbo nucifera HOM05D002705 ORTHO05D004955 2.7e-155 553.9 448 64.3
AagrBONN_evm.TU.Sc2ySwM_340.578 Anthoceros agrestis HOM05D002705 ORTHO05D004955 7.0e-135 486.1 703 41.0
Manes.14G040200 Manihot esculenta HOM05D002705 ORTHO05D004955 4.5e-134 483.4 370 66.5
CAN.G1654.1 Capsicum annuum HOM05D002705 ORTHO05D004955 2.1e-131 474.6 420 60.7
HPP92_027816 Vanilla planifolia HOM05D002705 ORTHO05D004955 9.4e-124 449.1 688 41.0
CAN.G1406.2 Capsicum annuum HOM05D002705 ORTHO05D004955 8.0e-123 446.0 348 66.1
MD07G1241700 Malus domestica HOM05D002705 ORTHO05D004955 1.7e-117 428.3 391 62.4
FAN05G3181 Fragaria x ananassa HOM05D002705 ORTHO05D004955 6.8e-114 416.4 364 64.3
CBR_g55304 Chara braunii HOM05D002705 ORTHO05D004955 7.1e-79 300.1 375 41.9
FAN01G1045 Fragaria x ananassa HOM05D002705 ORTHO05D004955 6.2e-75 287.0 288 59.0
SMO118G0116 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 9.3e-71 273.1 527 36.2
Pp3s32_280 Physcomitrium patens HOM05D020685 ORTHO05D022318 2.8e-67 261.5 698 31.4
FAN17G2187 Fragaria x ananassa HOM05D002705 ORTHO05D004955 5.8e-65 253.8 265 57.4
Hma1.2p1_2119F.1_g314380 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 3.8e-64 251.1 229 58.5
Ca_09786_v3 Cicer arietinum L. HOM05D002705 ORTHO05D004955 1.5e-60 239.2 156 76.9
CAN.G1559.4 Capsicum annuum HOM05D002705 ORTHO05D004955 1.1e-55 223.0 315 44.1
MCO05G634 Micromonas commoda HOM05D002705 ORTHO05D004955 2.5e-52 211.8 741 27.8
SEGI_07874 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 2.5e-52 211.8 246 48.4
CAN.G1406.1 Capsicum annuum HOM05D002705 ORTHO05D004955 8.2e-51 206.8 263 43.0
CAN.G1654.2 Capsicum annuum HOM05D002705 ORTHO05D004955 1.1e-50 206.5 165 59.4
MD07G1245200 Malus domestica HOM05D002705 ORTHO05D004955 6.9e-50 203.8 165 63.0
AagrBONN_evm.TU.Sc2ySwM_362.2714 Anthoceros agrestis HOM05D002705 ORTHO05D004955 1.3e-45 189.5 848 24.5
Mapoly0020s0153 Marchantia polymorpha HOM05D002705 ORTHO05D004955 1.8e-45 189.1 729 25.4
Cfa026800 Carpinus fangiana HOM05D002705 ORTHO05D004955 2.3e-45 188.7 755 25.8
Peaxi162Scf00073g01730 Petunia axillaris HOM05D002705 ORTHO05D004955 5.1e-45 187.6 244 48.8
Pp3s70_120 Physcomitrium patens HOM05D002705 ORTHO05D004955 2.8e-43 181.8 676 28.4
AagrBONN_evm.TU.Sc2ySwM_368.2221 Anthoceros agrestis HOM05D002705 ORTHO05D004955 2.2e-40 172.2 750 24.3
SHI35079 Sapria himalayana HOM05D002705 ORTHO05D000001 8.5e-40 170.2 306 40.2
SMO118G0216 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 1.9e-39 169.1 257 42.4
SEGI_26843 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 2.1e-38 165.6 112 75.0
Cpa.g.sc13.234 Carica papaya HOM05D002705 ORTHO05D004955 2.5e-36 158.7 159 54.7
CBR_g46888 Chara braunii HOM05D002705 ORTHO05D004955 2.5e-36 158.7 140 58.6
SEGI_13522 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 1.5e-33 149.4 831 23.7
SEGI_07071 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 7.7e-33 147.1 114 68.4
SMO119G0107 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 2.2e-32 145.6 751 24.1
Sc11g0004230 Simmondsia chinensis HOM05D002705 ORTHO05D004955 2.2e-32 145.6 101 68.3
VMungo0720G0654 Vigna mungo HOM05D002705 ORTHO05D004955 1.9e-31 142.5 114 69.3
SMO222G0004 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 9.4e-31 140.2 157 50.3
PRCOL_00004767 Prasinoderma coloniale HOM05D002705 ORTHO05D004955 1.6e-30 139.4 777 25.1
Solyc03g093840.3 Solanum lycopersicum HOM05D002705 ORTHO05D004955 6.1e-30 137.5 108 62.0
ATR0789G167 Amborella trichopoda HOM05D002705 ORTHO05D004955 1.5e-25 122.9 578 23.5
SEGI_05624 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 1.3e-24 119.8 113 54.0
MD07G1244100 Malus domestica HOM05D002705 ORTHO05D004955 3.9e-21 108.2 73 71.2
Medtr0675s0010 Medicago truncatula HOM05D002705 ORTHO05D004955 1.1e-20 106.7 720 25.4
CBR_g22322 Chara braunii HOM05D000019 ORTHO05D000002 2.0e-20 105.9 293 28.0
Cre07.g343333 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 2.6e-20 105.5 264 28.4
CDE06G1177 Ceratophyllum demersum HOM05D002705 ORTHO05D004955 1.3e-19 103.2 100 52.0
Lsat_1_v5_gn_5_183700 Lactuca sativa HOM05D002705 ORTHO05D021366 4.8e-19 101.3 69 75.4
Hund10671 Selenicereus undatus HOM05D002705 ORTHO05D004955 1.2e-17 96.7 82 56.1
CDE06G2589 Ceratophyllum demersum HOM05D002705 ORTHO05D004955 3.2e-15 88.6 251 31.5
Peaxi162Scf00073g01719 Petunia axillaris HOM05D002705 ORTHO05D004955 2.3e-13 82.4 64 62.5
SMO119G0278 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 2.3e-13 82.4 91 45.1
Cre07.g312250 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 3.7e-11 75.1 101 45.5
Cre07.g314400 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 4.8e-11 74.7 131 34.4
MD07G1244200 Malus domestica HOM05D002705 ORTHO05D004955 1.6e-09 69.7 70 52.9
FAN03G1556 Fragaria x ananassa HOM05D002001 ORTHO05D004100 8.5e-08 63.9 183 31.7
CBR_g26524 Chara braunii HOM05D002705 ORTHO05D004955 1.9e-07 62.8 95 41.1
FvH4_3g31690 Fragaria vesca HOM05D000769 ORTHO05D000598 5.5e-07 61.2 81 44.4
SMO115G0155 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 2.7e-06 58.9 69 39.1
MD07G1245800 Malus domestica HOM05D002705 ORTHO05D004955 8.0e-06 57.4 224 29.0


User provided reference genes

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