Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.L001843 Phaseolus vulgaris HOM05D003625 ORTHO05D004382 0.0e+00 1749.9 910 100.0
VMungo1080G0322 Vigna mungo HOM05D003625 ORTHO05D004382 0.0e+00 1619.0 932 91.2
Glyma.15G042000 Glycine max HOM05D003625 ORTHO05D004382 0.0e+00 1611.3 942 89.6
Glyma.13G332300 Glycine max HOM05D003625 ORTHO05D004382 0.0e+00 1587.8 919 91.0
Ca_01352_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 0.0e+00 1355.1 905 77.8
Medtr2g096290 Medicago truncatula HOM05D003625 ORTHO05D004382 0.0e+00 1325.5 907 76.2
Psat5g282480 Pisum sativum HOM05D003625 ORTHO05D004382 0.0e+00 1297.0 916 73.5
Lalb_Chr22g0350011 Lupinus albus HOM05D003625 ORTHO05D004382 0.0e+00 1226.8 924 72.3
Lj3g0001853 Lotus japonicus HOM05D003625 ORTHO05D004382 0.0e+00 1222.2 963 69.9
Lj3g0005082 Lotus japonicus HOM05D003625 ORTHO05D004382 0.0e+00 1216.8 908 72.2
arahy.Tifrunner.gnm1.ann1.6HBC95 Arachis hypogaea HOM05D003625 ORTHO05D004382 0.0e+00 1176.4 967 68.4
arahy.Tifrunner.gnm1.ann1.E19P6N Arachis hypogaea HOM05D003625 ORTHO05D004382 0.0e+00 1165.6 951 68.3
Ca_19197_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 0.0e+00 1120.1 921 67.5
Cfa011439 Carpinus fangiana HOM05D003625 ORTHO05D004382 0.0e+00 1091.6 960 63.3
Psat7g219280 Pisum sativum HOM05D003625 ORTHO05D004382 4.4e-308 1061.2 965 61.7
Lalb_Chr01g0003851 Lupinus albus HOM05D003625 ORTHO05D004382 9.8e-308 1060.1 952 62.6
Medtr4g063030 Medicago truncatula HOM05D003625 ORTHO05D004382 2.9e-307 1058.5 959 61.3
Prupe.8G250800 Prunus persica HOM05D003625 ORTHO05D004382 3.1e-301 1038.5 964 60.8
Manes.03G013700 Manihot esculenta HOM05D003625 ORTHO05D004382 9.8e-300 1033.5 934 62.3
TPR.G1039 Trifolium pratense HOM05D003625 ORTHO05D004382 1.9e-298 1029.2 959 60.9
CANSAT25G1777 Cannabis sativa HOM05D003625 ORTHO05D004382 5.4e-298 1027.7 959 61.0
MD02G1277900 Malus domestica HOM05D003625 ORTHO05D004382 5.2e-293 1011.1 974 59.7
QL93p2003_0013 Quercus lobata HOM05D003625 ORTHO05D004382 4.1e-290 1001.5 965 58.3
Potri.014G135700 Populus trichocarpa HOM05D003625 ORTHO05D004382 5.8e-284 981.1 964 58.2
GSVIVG01011024001 Vitis vinifera HOM05D003625 ORTHO05D004382 3.8e-283 978.4 914 60.4
QL01p033546 Quercus lobata HOM05D003625 ORTHO05D004382 8.4e-283 977.2 866 62.6
RcHm_v2.0_Chr6g0292351 Rosa chinensis HOM05D003625 ORTHO05D004382 3.5e-281 971.8 959 58.6
Cpa.g.sc60.39 Carica papaya HOM05D003625 ORTHO05D004382 5.1e-280 968.0 965 57.1
Ciclev10018730m.g Citrus clementina HOM05D003625 ORTHO05D004382 1.1e-279 966.8 964 56.8
CiPaw.08G101000 Carya illinoinensis HOM05D003625 ORTHO05D004382 4.3e-279 964.9 968 57.1
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 3.6e-278 961.8 958 57.5
QL12p023448 Quercus lobata HOM05D003625 ORTHO05D004382 1.1e-277 960.3 960 57.2
Thecc.07G010400 Theobroma cacao HOM05D003625 ORTHO05D004382 7.6e-276 954.1 961 57.5
Dinv32982 Davidia involucrata HOM05D003625 ORTHO05D004382 3.8e-275 951.8 969 57.3
Sabra14G0102100 Salix brachista HOM05D003625 ORTHO05D004382 8.7e-272 940.6 1038 54.1
COL.COLO4_09853 Corchorus olitorius HOM05D003625 ORTHO05D004382 2.5e-271 939.1 958 57.1
Gorai.009G451700 Gossypium raimondii HOM05D003625 ORTHO05D004382 1.8e-269 932.9 962 55.6
TWI59G0316 Tripterygium wilfordii HOM05D003625 ORTHO05D004382 1.8e-269 932.9 962 55.3
FAN24G2516 Fragaria x ananassa HOM05D003625 ORTHO05D004382 1.2e-268 930.2 1011 55.2
Gohir.A04G004900 Gossypium hirsutum HOM05D003625 ORTHO05D004382 2.0e-268 929.5 962 55.6
FAN20G2140 Fragaria x ananassa HOM05D003625 ORTHO05D004382 3.4e-268 928.7 1014 54.5
Gohir.D05G385000 Gossypium hirsutum HOM05D003625 ORTHO05D004382 7.6e-268 927.5 962 55.2
FvH4_2g24490 Fragaria vesca HOM05D003625 ORTHO05D004382 1.7e-267 926.4 1012 55.0
Dinv11285 Davidia involucrata HOM05D003625 ORTHO05D004382 2.7e-265 919.1 888 58.7
FAN27G0529 Fragaria x ananassa HOM05D003625 ORTHO05D004382 7.9e-265 917.5 1014 54.1
Eucgr.C03805 Eucalyptus grandis HOM05D003625 ORTHO05D004382 1.0e-264 917.1 961 54.7
FAN15G0592 Fragaria x ananassa HOM05D003625 ORTHO05D004382 7.4e-263 911.0 1037 53.3
PGR044G2464 Punica granatum HOM05D003625 ORTHO05D004382 6.2e-262 907.9 942 56.9
CsaV3_1G033940 Cucumis sativus L. HOM05D003625 ORTHO05D004382 5.8e-260 901.4 964 55.1
Potri.002G213400 Populus trichocarpa HOM05D003625 ORTHO05D004382 1.3e-259 900.2 841 61.0
CiPaw.13G100200 Carya illinoinensis HOM05D003625 ORTHO05D004382 4.1e-253 878.6 774 62.4
TAR365G1186 Trochodendron aralioides HOM05D003625 ORTHO05D004382 2.2e-251 872.8 1001 51.3
Ca_01349_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 1.3e-246 857.1 555 79.1
Sabra02G0149300 Salix brachista HOM05D003625 ORTHO05D004382 4.8e-246 855.1 841 58.9
arahy.Tifrunner.gnm1.ann1.L6Y1E3 Arachis hypogaea HOM05D003625 ORTHO05D004382 2.6e-244 849.4 592 75.3
Hma1.2p1_0209F.1_g089230 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 7.7e-244 847.8 971 52.2
Duzib213G0855 Durio zibethinus HOM05D003625 ORTHO05D004382 1.2e-241 840.5 855 56.7
Haze_04796 Corylus avellana HOM05D003625 ORTHO05D004382 3.9e-240 835.5 983 51.5
arahy.Tifrunner.gnm1.ann1.TJRY6P Arachis hypogaea HOM05D003625 ORTHO05D004382 5.7e-239 831.6 623 71.1
Duzib170G0264 Durio zibethinus HOM05D003625 ORTHO05D004382 1.7e-230 803.5 904 53.4
MELO3C020662.2 Cucumis melo HOM05D003625 ORTHO05D004382 2.2e-227 793.1 1091 47.8
CSS0005803 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 9.4e-226 787.7 968 51.2
EL10Ac7g17149 Beta vulgaris HOM05D003625 ORTHO05D004382 8.2e-222 774.6 969 48.9
Aqoxy2G00575 Aquilegia oxysepala HOM05D003625 ORTHO05D004382 1.1e-218 764.2 985 48.4
Lj2A1183G17 Lonicera japonica HOM05D003625 ORTHO05D004382 1.9e-218 763.5 1009 47.6
CAN.G426.9 Capsicum annuum HOM05D003625 ORTHO05D004382 4.7e-217 758.8 961 48.2
Sopen09g029170 Solanum pennellii HOM05D003625 ORTHO05D004382 5.7e-215 751.9 968 47.6
Sed0013189 Sechium edule HOM05D003625 ORTHO05D004382 9.8e-215 751.1 776 56.6
MBI19_g35956_MAGBIO Magnolia biondii HOM05D003625 ORTHO05D004382 1.7e-214 750.4 999 46.9
Solyc09g074330.3 Solanum lycopersicum HOM05D003625 ORTHO05D004382 8.3e-214 748.0 966 47.6
Nitab4.5_0001651g0100 Nicotiana tabacum HOM05D003625 ORTHO05D004382 1.1e-213 747.7 971 48.0
Duzib268G0343 Durio zibethinus HOM05D003625 ORTHO05D004382 4.5e-212 742.3 838 52.6
vmacro02517 Vaccinium macrocarpon HOM05D003625 ORTHO05D004382 2.1e-209 733.4 946 49.6
THA.LOC104801203 Tarenaya hassleriana HOM05D003625 ORTHO05D004382 2.7e-209 733.0 930 48.2
Nn3g21233 Nelumbo nucifera HOM05D003625 ORTHO05D004382 1.3e-206 724.2 806 54.5
Nitab4.5_0010231g0010 Nicotiana tabacum HOM05D003625 ORTHO05D004382 6.3e-206 721.8 965 47.5
Oeu022807.1 Olea europaea HOM05D003625 ORTHO05D004382 4.1e-205 719.2 976 45.2
Cc01_g20080 Coffea canephora HOM05D003625 ORTHO05D004382 1.2e-204 717.6 932 47.5
Psat5g051000 Pisum sativum HOM05D003625 ORTHO05D004382 4.4e-199 699.1 487 75.2
Rhsim13G0018500 Rhododendron simsii HOM05D003625 ORTHO05D004382 3.5e-196 689.5 1034 45.7
PSO407G0030 Papaver somniferum HOM05D003625 ORTHO05D004382 1.8e-192 677.2 996 43.1
Haze_24021 Corylus avellana HOM05D003625 ORTHO05D004382 5.2e-192 675.6 563 67.1
PSO170G6480 Papaver somniferum HOM05D003625 ORTHO05D004382 2.0e-191 673.7 1002 43.6
ATR0626G050 Amborella trichopoda HOM05D003625 ORTHO05D004382 4.9e-190 669.1 1049 41.8
MSTRG.18201 Avicennia marina HOM05D003625 ORTHO05D004382 4.9e-190 669.1 985 42.9
Peaxi162Scf00006g03621 Petunia axillaris HOM05D003625 ORTHO05D004382 4.1e-189 666.0 948 45.8
SalBow3G1663 Salvia bowleyana HOM05D003625 ORTHO05D004382 2.7e-188 663.3 906 45.0
Aa31LG5G2610 Aethionema arabicum HOM05D003625 ORTHO05D004382 1.9e-186 657.1 955 45.0
AUR62034443 Chenopodium quinoa HOM05D003625 ORTHO05D004382 2.4e-181 640.2 920 44.3
SGA_v2.0_scaffold1G00428 Striga asiatica HOM05D003625 ORTHO05D004382 6.0e-180 635.6 988 41.0
HanXRQChr05g0150041 Helianthus annuus HOM05D003625 ORTHO05D004382 6.6e-179 632.1 921 43.8
BcaB01g01983 Brassica carinata HOM05D003625 ORTHO05D004382 2.1e-177 627.1 922 43.8
BolC9t53180H Brassica oleracea HOM05D003625 ORTHO05D004382 2.1e-177 627.1 922 43.8
ECA236G1413 Erigeron canadensis HOM05D003625 ORTHO05D004382 2.1e-177 627.1 932 43.2
C09p02500 Brassica napus HOM05D003625 ORTHO05D004382 2.8e-177 626.7 923 44.1
A09p02400 Brassica napus HOM05D003625 ORTHO05D004382 4.7e-177 625.9 932 43.5
BraA09t35887Z Brassica rapa HOM05D003625 ORTHO05D004382 4.7e-177 625.9 943 43.2
HanXRQChr06g0164001 Helianthus annuus HOM05D003625 ORTHO05D004382 8.1e-177 625.2 902 43.6
AUR62028969 Chenopodium quinoa HOM05D003625 ORTHO05D004382 6.8e-176 622.1 953 42.4
BcaB01g01939 Brassica carinata HOM05D003625 ORTHO05D004382 2.6e-175 620.2 927 43.4
DCAR_002782 Daucus carota HOM05D003625 ORTHO05D004382 2.6e-175 620.2 940 43.1
AL6G49860 Arabidopsis lyrata HOM05D003625 ORTHO05D004382 1.4e-173 614.4 931 44.6
Thhalv10028409m.g Eutrema salsugineum HOM05D003625 ORTHO05D004382 2.4e-173 613.6 937 43.9
DCAR_005834 Daucus carota HOM05D003625 ORTHO05D004382 2.1e-172 610.5 960 42.1
Carub.0006s3397 Capsella rubella HOM05D003625 ORTHO05D004382 1.7e-171 607.4 931 43.7
AT4G03090 Arabidopsis thaliana HOM05D003625 ORTHO05D004382 2.5e-170 603.6 941 43.6
ClCG03G001700 Citrullus lanatus HOM05D003625 ORTHO05D004382 2.8e-169 600.1 591 57.7
Sp6g03120 Schrenkiella parvula HOM05D003625 ORTHO05D004382 6.2e-169 599.0 933 43.1
CDE05G3415 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 9.9e-167 591.7 964 41.5
SHI14627 Sapria himalayana HOM05D003625 ORTHO05D004382 1.2e-164 584.7 982 41.8
Lsat_1_v5_gn_8_55721 Lactuca sativa HOM05D003625 ORTHO05D004382 1.0e-155 555.1 834 45.1
Lsat_1_v5_gn_5_189721 Lactuca sativa HOM05D003625 ORTHO05D004382 6.9e-144 515.8 928 38.1
AUR62034599 Chenopodium quinoa HOM05D003625 ORTHO05D004382 8.4e-142 508.8 700 46.3
TPR.G34306 Trifolium pratense HOM05D003625 ORTHO05D004382 2.7e-132 477.2 334 75.7
Atru.chr5.1298 Acer truncatum HOM05D003625 ORTHO05D004382 8.2e-129 465.7 524 51.3
unitig_0.g1186 Utricularia gibba HOM05D003625 ORTHO05D004382 4.1e-128 463.4 951 36.2
Mapoly0033s0004 Marchantia polymorpha HOM05D003625 ORTHO05D004382 2.2e-126 457.6 1026 33.8
Zm00001eb165880 Zea mays HOM05D003625 ORTHO05D004382 2.9e-126 457.2 781 40.2
Atru.chr5.1297 Acer truncatum HOM05D003625 ORTHO05D004382 5.0e-126 456.4 383 64.8
BraA02t07497Z Brassica rapa HOM05D003625 ORTHO05D004382 1.1e-125 455.3 781 39.8
Zm00001eb115600 Zea mays HOM05D003625 ORTHO05D004382 7.4e-122 442.6 775 40.1
TPR.G40473 Trifolium pratense HOM05D003625 ORTHO05D004382 8.2e-121 439.1 261 85.1
BcaC03g16206 Brassica carinata HOM05D003625 ORTHO05D004382 1.1e-120 438.7 784 38.6
TPR.G34304 Trifolium pratense HOM05D003625 ORTHO05D004382 1.2e-119 435.3 372 63.7
A02p25090 Brassica napus HOM05D003625 ORTHO05D004382 5.9e-119 433.0 808 37.9
CARHR251520 Cardamine hirsuta HOM05D003625 ORTHO05D004382 2.9e-118 430.6 567 46.9
HPP92_011331 Vanilla planifolia HOM05D003625 ORTHO05D004382 3.6e-116 423.7 523 47.8
C02p39820 Brassica napus HOM05D003625 ORTHO05D004382 4.1e-112 410.2 806 37.1
FvH4_2g24530 Fragaria vesca HOM05D003625 ORTHO05D004382 7.0e-112 409.5 441 55.8
Pp3c15_10800 Physcomitrium patens HOM05D003625 ORTHO05D004382 1.8e-107 394.8 991 32.1
Pp3c9_3000 Physcomitrium patens HOM05D003625 ORTHO05D004382 1.5e-106 391.7 1007 32.0
BolC2t10009H Brassica oleracea HOM05D003625 ORTHO05D004382 2.9e-102 377.5 572 42.0
arahy.Tifrunner.gnm1.ann1.DI3WFZ Arachis hypogaea HOM05D003625 ORTHO05D004382 5.2e-99 366.7 363 57.6
arahy.Tifrunner.gnm1.ann1.AN8C0D Arachis hypogaea HOM05D003625 ORTHO05D004382 6.8e-99 366.3 398 53.8
BcaB05g23686 Brassica carinata HOM05D003625 ORTHO05D004382 2.0e-98 364.8 738 37.8
SMO271G0139 Selaginella moellendorffii HOM05D003625 ORTHO05D004382 1.9e-93 348.2 1021 30.8
AagrBONN_evm.TU.Sc2ySwM_228.4764 Anthoceros agrestis HOM05D000001 ORTHO05D000003 9.8e-90 335.9 1068 27.6
Ah.04g162700 Amaranthus hybridus HOM05D003625 ORTHO05D004382 3.1e-88 330.9 608 39.6
Sc17g0003670 Simmondsia chinensis HOM05D003625 ORTHO05D004382 2.4e-80 304.7 286 58.7
Prupe.8G267900 Prunus persica HOM05D003625 ORTHO05D004382 4.3e-77 293.9 343 52.2
CSS0019256 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 5.8e-74 283.5 268 59.3
Haze_24022 Corylus avellana HOM05D003625 ORTHO05D004382 2.2e-73 281.6 481 39.7
SEGI_20946 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 6.0e-71 273.5 681 32.7
Ca_31206_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 3.9e-70 270.8 213 72.3
Sc17g0003660 Simmondsia chinensis HOM05D003625 ORTHO05D004382 6.4e-65 253.4 236 56.4
Sc17g0003680 Simmondsia chinensis HOM05D003625 ORTHO05D004382 4.0e-51 207.6 338 40.8
HanXRQChr12g0370811 Helianthus annuus HOM05D003625 ORTHO05D004382 7.6e-50 203.4 377 38.7
AUR62034492 Chenopodium quinoa HOM05D003625 ORTHO05D004382 2.1e-47 195.3 186 57.5
CSS0041154 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 5.1e-46 190.7 271 49.4
Hma1.2p1_0358F.1_g134790 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 2.1e-44 185.3 229 49.8
CARHR251510 Cardamine hirsuta HOM05D003625 ORTHO05D004382 1.1e-43 183.0 317 41.0
QL12p023546 Quercus lobata HOM05D003625 ORTHO05D004382 2.1e-39 168.7 568 29.8
CSS0039297 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 1.5e-37 162.5 210 47.1
SEGI_15323 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 4.0e-35 154.5 184 48.9
Hma1.2p1_0111F.1_g053430 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 9.0e-35 153.3 147 53.7
QL12p023490 Quercus lobata HOM05D003625 ORTHO05D004382 3.4e-34 151.4 218 45.9
Lalb_Chr24g0394281 Lupinus albus HOM05D003625 ORTHO05D004382 3.8e-33 147.9 144 54.2
MELO3C022916.2 Cucumis melo HOM05D003625 ORTHO05D004382 1.8e-30 139.0 176 46.6
TPR.G8723 Trifolium pratense HOM05D000036 ORTHO05D012241 1.8e-30 139.0 81 86.4
QL01p033556 Quercus lobata HOM05D003625 ORTHO05D004382 8.7e-30 136.7 114 68.4
TPR.G163 Trifolium pratense HOM05D003625 ORTHO05D004382 1.1e-29 136.3 145 56.6
QL05p076995 Quercus lobata HOM05D003625 ORTHO05D004382 1.9e-29 135.6 101 73.3
HanXRQChr12g0370771 Helianthus annuus HOM05D003625 ORTHO05D004382 1.8e-27 129.0 191 44.0
AUR62036671 Chenopodium quinoa HOM05D003625 ORTHO05D004382 7.1e-24 117.1 286 35.3
Medtr4g061370 Medicago truncatula HOM05D000876 ORTHO05D000285 1.3e-22 112.8 126 50.8
Hma1.2p1_0358F.1_g134800 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 5.1e-22 110.9 130 46.2
QL05p076992 Quercus lobata HOM05D003625 ORTHO05D004382 1.1e-19 103.2 92 64.1
CBR_g32446 Chara braunii HOM05D000019 ORTHO05D000353 1.5e-18 99.4 138 41.3
HPP92_011330 Vanilla planifolia HOM05D003625 ORTHO05D004382 1.7e-17 95.9 136 45.6
CDE11G0573 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 5.0e-17 94.4 83 51.8
Hma1.2p1_3245F.1_g334350 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 1.2e-15 89.7 117 48.7
CBR_g32447 Chara braunii HOM05D003625 ORTHO05D004382 3.6e-15 88.2 154 37.0
SEGI_02434 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 1.4e-14 86.3 72 55.6
Os05g0188600 Oryza sativa ssp. japonica HOM05D003625 ORTHO05D004382 8.8e-14 83.6 95 44.2
Zm00001eb115510 Zea mays HOM05D003625 ORTHO05D004382 2.5e-13 82.0 87 49.4
Zm00001eb115530 Zea mays HOM05D003625 ORTHO05D037860 3.1e-11 75.1 127 39.4
BolC9t54863H Brassica oleracea HOM05D000096 ORTHO05D000045 2.0e-10 72.4 97 39.2
HanXRQChr01g0002901 Helianthus annuus HOM05D003625 ORTHO05D004382 3.8e-09 68.2 101 42.6
Zm00001eb115560 Zea mays HOM05D003625 ORTHO05D037860 5.0e-09 67.8 196 31.1
arahy.Tifrunner.gnm1.ann1.385P84 Arachis hypogaea HOM05D000055 ORTHO05D001675 3.0e-06 58.5 44 70.5
HanXRQChr16g0512981 Helianthus annuus HOM05D003625 ORTHO05D048258 5.1e-06 57.8 99 39.4


User provided reference genes

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