Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G103000 Phaseolus vulgaris HOM05D005300 ORTHO05D006622 5.4e-251 870.5 449 100.0
Glyma.12G098200 Glycine max HOM05D005300 ORTHO05D006622 3.3e-232 808.1 447 93.3
Glyma.06G306700 Glycine max HOM05D005300 ORTHO05D006622 2.7e-226 788.5 443 92.3
Lj3g0003317 Lotus japonicus HOM05D005300 ORTHO05D006622 1.9e-211 739.2 452 84.1
Lalb_Chr03g0028691 Lupinus albus HOM05D005300 ORTHO05D006622 3.2e-211 738.4 453 82.6
Psat0s4267g0040 Pisum sativum HOM05D005300 ORTHO05D006622 6.3e-207 724.2 447 81.7
Ca_03278_v3 Cicer arietinum L. HOM05D005300 ORTHO05D006622 8.2e-207 723.8 447 82.8
TPR.G4668 Trifolium pratense HOM05D005300 ORTHO05D006622 4.1e-206 721.5 448 81.2
arahy.Tifrunner.gnm1.ann1.B9TUKK Arachis hypogaea HOM05D005300 ORTHO05D006622 3.2e-203 711.8 455 81.3
arahy.Tifrunner.gnm1.ann1.SJMT99 Arachis hypogaea HOM05D005300 ORTHO05D006622 7.2e-203 710.7 455 81.1
Medtr4g048590 Medicago truncatula HOM05D005300 ORTHO05D006622 6.1e-202 707.6 448 80.6
CiPaw.04G115200 Carya illinoinensis HOM05D005300 ORTHO05D006622 1.1e-187 660.2 454 76.0
RcHm_v2.0_Chr2g0159081 Rosa chinensis HOM05D005300 ORTHO05D006622 3.3e-187 658.7 451 76.1
CANSAT64G1405 Cannabis sativa HOM05D005300 ORTHO05D006622 9.8e-184 647.1 453 75.1
QL08p032961 Quercus lobata HOM05D005300 ORTHO05D006622 1.8e-182 642.9 452 73.7
Prupe.3G216500 Prunus persica HOM05D005300 ORTHO05D006622 1.6e-181 639.8 442 75.1
PGR042G1729 Punica granatum HOM05D005300 ORTHO05D006622 4.5e-181 638.3 454 74.4
Ciclev10015229m.g Citrus clementina HOM05D005300 ORTHO05D006622 5.9e-181 637.9 451 75.4
FvH4_6g43160 Fragaria vesca HOM05D005300 ORTHO05D006622 1.7e-180 636.3 452 75.0
FAN05G3018 Fragaria x ananassa HOM05D005300 ORTHO05D006622 8.6e-180 634.0 452 75.0
Cpa.g.sc87.86 Carica papaya HOM05D005300 ORTHO05D006622 1.1e-179 633.6 439 76.5
FAN02G3120 Fragaria x ananassa HOM05D005300 ORTHO05D006622 1.1e-179 633.6 452 74.8
Atru.chr6.3194 Acer truncatum HOM05D005300 ORTHO05D006622 5.6e-179 631.3 459 73.6
Sabra14G0116500 Salix brachista HOM05D005300 ORTHO05D006622 1.6e-178 629.8 449 75.1
TWI36G1224 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 8.0e-178 627.5 451 73.4
Solyc07g052290.1 Solanum lycopersicum HOM05D005300 ORTHO05D006622 1.4e-177 626.7 452 74.8
CSS0027646 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 1.8e-177 626.3 452 73.2
Potri.002G228600 Populus trichocarpa HOM05D005300 ORTHO05D006622 2.3e-177 625.9 446 75.6
CSS0024072 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 4.0e-177 625.2 451 73.6
PGSC0003DMG400028948 Solanum tuberosum HOM05D005300 ORTHO05D006622 8.9e-177 624.0 452 74.6
Sopen07g025910 Solanum pennellii HOM05D005300 ORTHO05D006622 1.2e-176 623.6 452 74.6
TWI18G0506 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 1.2e-176 623.6 454 72.2
Potri.014G154000 Populus trichocarpa HOM05D005300 ORTHO05D006622 2.0e-176 622.9 449 75.1
Sabra02G0174700 Salix brachista HOM05D005300 ORTHO05D006622 3.4e-176 622.1 451 74.9
Peaxi162Scf00007g00072 Petunia axillaris HOM05D005300 ORTHO05D006622 2.9e-175 619.0 439 74.7
Manes.12G074100 Manihot esculenta HOM05D005300 ORTHO05D006622 1.4e-174 616.7 449 72.2
TAR624G0116 Trochodendron aralioides HOM05D005300 ORTHO05D006622 4.1e-174 615.1 457 72.0
EL10Ac4g10369 Beta vulgaris HOM05D005300 ORTHO05D006622 9.2e-174 614.0 451 73.2
Nn1g03500 Nelumbo nucifera HOM05D005300 ORTHO05D006622 4.6e-173 611.7 451 72.5
Thecc.02G365500 Theobroma cacao HOM05D005300 ORTHO05D006622 7.8e-173 610.9 446 73.5
TAR626G0150 Trochodendron aralioides HOM05D005300 ORTHO05D006622 1.3e-172 610.1 460 70.4
CAN.G1296.1 Capsicum annuum HOM05D005300 ORTHO05D006622 2.3e-172 609.4 444 73.0
Cc05_g04360 Coffea canephora HOM05D005300 ORTHO05D006622 6.6e-172 607.8 459 69.7
MSTRG.14149 Avicennia marina HOM05D005300 ORTHO05D006622 1.1e-171 607.1 451 71.0
FAN09G2150 Fragaria x ananassa HOM05D005300 ORTHO05D006622 3.3e-171 605.5 428 75.0
Lj1P766T34 Lonicera japonica HOM05D005300 ORTHO05D006622 4.3e-171 605.1 451 70.5
COL.COLO4_11250 Corchorus olitorius HOM05D005300 ORTHO05D006622 1.6e-170 603.2 450 72.0
Oeu007114.1 Olea europaea HOM05D005300 ORTHO05D006622 1.6e-170 603.2 435 72.9
AUR62019178 Chenopodium quinoa HOM05D005300 ORTHO05D006622 2.8e-170 602.4 451 71.4
AUR62019179 Chenopodium quinoa HOM05D005300 ORTHO05D006622 2.8e-170 602.4 451 71.4
AUR62000009 Chenopodium quinoa HOM05D005300 ORTHO05D006622 1.1e-169 600.5 452 71.0
Gohir.D12G176700 Gossypium hirsutum HOM05D005300 ORTHO05D006622 1.4e-169 600.1 456 70.6
Gorai.008G189100 Gossypium raimondii HOM05D005300 ORTHO05D006622 1.4e-169 600.1 447 71.6
ClCG02G008830 Citrullus lanatus HOM05D005300 ORTHO05D006622 3.1e-169 599.0 457 72.2
Duzib251G0812 Durio zibethinus HOM05D005300 ORTHO05D006622 2.6e-168 595.9 452 71.7
Gohir.A12G174000 Gossypium hirsutum HOM05D005300 ORTHO05D006622 4.4e-168 595.1 451 70.5
MELO3C019273.2 Cucumis melo HOM05D005300 ORTHO05D006622 7.5e-168 594.3 454 70.9
THA.LOC104826148 Tarenaya hassleriana HOM05D005300 ORTHO05D006622 1.3e-167 593.6 453 70.4
Eucgr.A01121 Eucalyptus grandis HOM05D005300 ORTHO05D006622 2.9e-167 592.4 457 70.5
PSO675G7879 Papaver somniferum HOM05D005300 ORTHO05D006622 4.9e-167 591.7 458 68.3
Aqoxy1G02098 Aquilegia oxysepala HOM05D005300 ORTHO05D006622 6.4e-167 591.3 455 68.6
PSO541G4463 Papaver somniferum HOM05D005300 ORTHO05D006622 5.4e-166 588.2 459 67.5
MD09G1110000 Malus domestica HOM05D005300 ORTHO05D006622 1.2e-165 587.0 360 82.8
Lsat_1_v5_gn_9_107520 Lactuca sativa HOM05D005300 ORTHO05D006622 1.6e-165 586.6 455 69.7
Thhalv10017977m.g Eutrema salsugineum HOM05D005300 ORTHO05D006622 2.1e-165 586.3 451 69.2
CARHR126300 Cardamine hirsuta HOM05D005300 ORTHO05D006622 3.5e-165 585.5 451 69.2
AL4G27860 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 6.0e-165 584.7 451 68.7
Sed0016669 Sechium edule HOM05D005300 ORTHO05D006622 6.0e-165 584.7 451 70.5
Carub.0004s1382 Capsella rubella HOM05D005300 ORTHO05D006622 1.0e-164 583.9 451 69.2
Sp4g14840 Schrenkiella parvula HOM05D005300 ORTHO05D006622 1.0e-164 583.9 451 69.4
ECA240G1660 Erigeron canadensis HOM05D005300 ORTHO05D006622 3.0e-164 582.4 418 72.7
AT1G05140 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 3.9e-164 582.0 447 69.4
Lalb_Chr19g0135951 Lupinus albus HOM05D005300 ORTHO05D006622 5.1e-164 581.6 360 83.6
Migut.H01227 Erythranthe guttata HOM05D005300 ORTHO05D006622 1.2e-162 577.0 454 67.8
Aa31LG1G19610 Aethionema arabicum HOM05D005300 ORTHO05D006622 3.6e-162 575.5 418 72.5
SalBow1G7639 Salvia bowleyana HOM05D005300 ORTHO05D006622 3.6e-162 575.5 448 68.8
AL1G14900 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 6.2e-162 574.7 442 69.0
Sc21g0001390 Simmondsia chinensis HOM05D005300 ORTHO05D006622 3.1e-161 572.4 433 70.7
Carub.0001s0441 Capsella rubella HOM05D005300 ORTHO05D006622 3.4e-160 568.9 443 69.5
Rhsim04G0052800 Rhododendron simsii HOM05D005300 ORTHO05D006622 1.7e-159 566.6 449 66.8
CiPaw.03G159400 Carya illinoinensis HOM05D005300 ORTHO05D006622 2.2e-159 566.2 458 69.2
BraA05t20264Z Brassica rapa HOM05D005300 ORTHO05D006622 3.7e-159 565.5 449 67.7
A05p13230 Brassica napus HOM05D005300 ORTHO05D006622 4.9e-159 565.1 449 67.7
BcaC02g11315 Brassica carinata HOM05D005300 ORTHO05D006622 6.4e-159 564.7 427 69.8
C04p17170 Brassica napus HOM05D005300 ORTHO05D006622 6.4e-159 564.7 427 69.8
BolC4t23267H Brassica oleracea HOM05D005300 ORTHO05D006622 6.4e-159 564.7 427 69.8
SGA_v2.0_scaffold159G37576 Striga asiatica HOM05D005300 ORTHO05D006622 8.3e-159 564.3 437 65.9
HanXRQChr10g0295521 Helianthus annuus HOM05D005300 ORTHO05D006622 1.4e-158 563.5 444 68.5
BcaB02g10466 Brassica carinata HOM05D005300 ORTHO05D006622 1.9e-158 563.1 438 68.5
DCAR_012943 Daucus carota HOM05D005300 ORTHO05D006622 1.2e-157 560.5 444 68.0
BraA10t42640Z Brassica rapa HOM05D005300 ORTHO05D006622 4.6e-157 558.5 452 65.9
CARHR004610 Cardamine hirsuta HOM05D005300 ORTHO05D006622 1.7e-156 556.6 448 66.7
A10p03670 Brassica napus HOM05D005300 ORTHO05D006622 3.0e-156 555.8 452 65.9
BolC5t29115H Brassica oleracea HOM05D005300 ORTHO05D006622 6.6e-156 554.7 452 65.5
Sp1g03990 Schrenkiella parvula HOM05D005300 ORTHO05D006622 3.6e-154 548.9 455 66.2
SpUn0024_0150 Schrenkiella parvula HOM05D005300 ORTHO05D006622 3.6e-154 548.9 455 66.2
Dinv39717 Davidia involucrata HOM05D005300 ORTHO05D006622 8.4e-151 537.7 339 78.8
C05p03380 Brassica napus HOM05D005300 ORTHO05D006622 3.3e-147 525.8 362 73.2
Actinidia08387 Actinidia chinensis HOM05D005300 ORTHO05D006622 3.1e-145 519.2 400 68.0
AT2G32480 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 4.4e-144 515.4 451 63.2
ATR0794G038 Amborella trichopoda HOM05D005300 ORTHO05D006622 6.6e-140 501.5 450 60.7
Nitab4.5_0009179g0010 Nicotiana tabacum HOM05D005300 ORTHO05D006622 6.0e-133 478.4 318 77.0
GSVIVG01030436001 Vitis vinifera HOM05D005300 ORTHO05D006622 5.1e-132 475.3 455 59.3
CsaV3_2G034890 Cucumis sativus L. HOM05D005300 ORTHO05D006622 6.9e-129 464.9 305 78.7
MBI02_g21883_MAGBIO Magnolia biondii HOM05D005300 ORTHO05D006622 7.6e-128 461.5 309 76.1
Dinv05423 Davidia involucrata HOM05D005300 ORTHO05D006622 3.0e-124 449.5 288 79.2
Zm00001eb219720 Zea mays HOM05D005300 ORTHO05D006622 4.9e-119 432.2 367 61.9
Nitab4.5_0002137g0020 Nicotiana tabacum HOM05D005300 ORTHO05D006622 3.2e-118 429.5 280 78.6
Mapoly0064s0026 Marchantia polymorpha HOM05D005300 ORTHO05D006622 1.6e-117 427.2 374 59.1
AagrBONN_evm.TU.Sc2ySwM_344.3933 Anthoceros agrestis HOM05D005300 ORTHO05D006622 3.5e-117 426.0 366 59.8
Os03g0579000 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D006622 1.0e-116 424.5 367 61.0
Zm00001eb049010 Zea mays HOM05D005300 ORTHO05D006622 2.3e-116 423.3 369 61.0
CDE12G0066 Ceratophyllum demersum HOM05D005300 ORTHO05D006622 7.4e-115 418.3 295 72.2
SMO351G0125 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 6.9e-113 411.8 365 56.7
BcaC05g24426 Brassica carinata HOM05D005300 ORTHO05D006622 2.6e-112 409.8 280 72.9
Haze_12853 Corylus avellana HOM05D005300 ORTHO05D006622 3.1e-105 386.3 284 72.5
Pp3c9_3170 Physcomitrium patens HOM05D005300 ORTHO05D006622 1.2e-104 384.4 367 56.4
Pp3c19_19130 Physcomitrium patens HOM05D005300 ORTHO05D006622 5.9e-104 382.1 365 57.0
CDE01G0785 Ceratophyllum demersum HOM05D001211 ORTHO05D001084 1.0e-100 371.3 300 64.3
SEGI_01159 Sequoiadendron giganteum HOM05D005300 ORTHO05D006622 1.5e-99 367.5 378 54.5
CBR_g50915 Chara braunii HOM05D005300 ORTHO05D006622 2.4e-97 360.1 384 53.1
PRCOL_00005585 Prasinoderma coloniale HOM05D005300 ORTHO05D006622 2.2e-95 353.6 361 51.5
Pp3c18_14380 Physcomitrium patens HOM05D005300 ORTHO05D006622 3.2e-94 349.7 365 52.6
MCO09G462 Micromonas commoda HOM05D005300 ORTHO05D006622 1.8e-89 334.0 364 52.5
Cre03.g144164 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D006622 1.0e-87 328.2 377 48.8
BcaB06g28596 Brassica carinata HOM05D005300 ORTHO05D006622 1.0e-84 318.2 243 69.1
BcaC02g07921 Brassica carinata HOM05D005300 ORTHO05D006622 1.9e-70 270.8 329 49.8
HPP92_012410 Vanilla planifolia HOM05D005300 ORTHO05D006622 1.4e-52 211.5 148 72.3
C04p61940 Brassica napus HOM05D005300 ORTHO05D006622 1.8e-52 211.1 342 41.2
A04p24950 Brassica napus HOM05D005300 ORTHO05D006622 5.2e-44 183.0 219 49.8
ATR0681G167 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.9e-41 174.5 115 73.9
ATR0069G018 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.3e-39 168.3 164 54.3
ATR0753G011 Amborella trichopoda HOM05D005300 ORTHO05D006622 4.4e-35 153.3 113 67.3
ATR0069G030 Amborella trichopoda HOM05D005300 ORTHO05D006622 7.6e-35 152.5 88 83.0
Zm00001eb417680 Zea mays HOM05D005300 ORTHO05D006622 1.4e-33 148.3 116 62.9
ATR0820G169 Amborella trichopoda HOM05D005300 ORTHO05D006622 5.1e-31 139.8 171 49.7
unitig_749.g13943 Utricularia gibba HOM05D005300 ORTHO05D006622 5.4e-25 119.8 73 86.3
ATR0775G001 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.1e-20 105.5 87 71.3
SMO163G0076 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 3.2e-17 94.0 92 52.2
Os05g0388025 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D299932 3.7e-13 80.5 75 50.7
ATR0681G370 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.7e-10 71.6 56 67.9
Cre17.g730100 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D146069 1.7e-10 71.6 178 36.0


User provided reference genes

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