Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G076600 Phaseolus vulgaris HOM05D005783 ORTHO05D007042 4.0e-23 110.5 54 100.0
Phvul.007G033301 Phaseolus vulgaris HOM05D005783 ORTHO05D007042 5.9e-19 96.7 47 100.0
Phvul.008G022975 Phaseolus vulgaris HOM05D005783 ORTHO05D007042 5.9e-19 96.7 47 100.0
Phvul.001G162100 Phaseolus vulgaris HOM05D005783 ORTHO05D007042 2.3e-18 94.7 47 97.9
CiPaw.04G187800 Carya illinoinensis HOM05D005783 ORTHO05D007042 6.6e-18 93.2 47 95.7
PGR031G0633 Punica granatum HOM05D005783 ORTHO05D007042 8.6e-18 92.8 47 95.7
FvH4_2g21220 Fragaria vesca HOM05D005783 ORTHO05D007042 1.1e-17 92.4 47 93.6
FAN20G2131 Fragaria x ananassa HOM05D005783 ORTHO05D007042 1.1e-17 92.4 47 93.6
Potri.002G036500 Populus trichocarpa HOM05D005783 ORTHO05D007042 1.1e-17 92.4 47 93.6
RcHm_v2.0_Chr6g0287721 Rosa chinensis HOM05D005783 ORTHO05D007042 1.1e-17 92.4 47 93.6
Nn3g19695 Nelumbo nucifera HOM05D005783 ORTHO05D007042 1.5e-17 92.0 47 93.6
COL.COLO4_31022 Corchorus olitorius HOM05D005783 ORTHO05D007042 1.9e-17 91.7 47 91.5
CDE03G0454 Ceratophyllum demersum HOM05D005783 ORTHO05D007042 2.5e-17 91.3 47 93.6
Eucgr.A00909 Eucalyptus grandis HOM05D005783 ORTHO05D007042 2.5e-17 91.3 47 93.6
Lalb_Chr12g0200071 Lupinus albus HOM05D005783 ORTHO05D007042 2.5e-17 91.3 47 93.6
Lalb_Chr13g0299521 Lupinus albus HOM05D005783 ORTHO05D007042 2.5e-17 91.3 47 93.6
Manes.13G035600 Manihot esculenta HOM05D005783 ORTHO05D007042 2.5e-17 91.3 47 93.6
Hund09610 Selenicereus undatus HOM05D005783 ORTHO05D007042 2.5e-17 91.3 47 93.6
MELO3C012871.2 Cucumis melo HOM05D005783 ORTHO05D007042 3.3e-17 90.9 47 93.6
CsaV3_3G022140 Cucumis sativus L. HOM05D005783 ORTHO05D007042 3.3e-17 90.9 47 93.6
Duzib160G0066 Durio zibethinus HOM05D005783 ORTHO05D007042 3.3e-17 90.9 47 91.5
Gohir.A10G043300 Gossypium hirsutum HOM05D005783 ORTHO05D007042 3.3e-17 90.9 47 93.6
Gohir.D10G044500 Gossypium hirsutum HOM05D005783 ORTHO05D007042 3.3e-17 90.9 47 93.6
Gorai.011G047500 Gossypium raimondii HOM05D005783 ORTHO05D007042 3.3e-17 90.9 47 93.6
TWI12G1387 Tripterygium wilfordii HOM05D005783 ORTHO05D007042 3.3e-17 90.9 47 93.6
Lj1g0019785 Lotus japonicus HOM05D005783 ORTHO05D007042 4.2e-17 90.5 47 93.6
AL3G53490 Arabidopsis lyrata HOM05D005783 ORTHO05D007042 5.5e-17 90.1 47 89.4
Carub.0003s3493 Capsella rubella HOM05D005783 ORTHO05D007042 5.5e-17 90.1 47 89.4
CARHR111040 Cardamine hirsuta HOM05D005783 ORTHO05D007042 5.5e-17 90.1 47 89.4
Glyma.03G164500 Glycine max HOM05D005783 ORTHO05D007042 5.5e-17 90.1 47 93.6
AT2G20490 Arabidopsis thaliana HOM05D005783 ORTHO05D007042 7.2e-17 89.7 47 89.4
arahy.Tifrunner.gnm1.ann1.3WZ992 Arachis hypogaea HOM05D005783 ORTHO05D007042 7.2e-17 89.7 47 91.5
arahy.Tifrunner.gnm1.ann1.EB1FDX Arachis hypogaea HOM05D005783 ORTHO05D007042 7.2e-17 89.7 47 91.5
arahy.Tifrunner.gnm1.ann1.P2X2DJ Arachis hypogaea HOM05D005783 ORTHO05D007042 7.2e-17 89.7 47 91.5
arahy.Tifrunner.gnm1.ann1.R5MBR2 Arachis hypogaea HOM05D005783 ORTHO05D007042 7.2e-17 89.7 47 91.5
Gorai.010G167900 Gossypium raimondii HOM05D005783 ORTHO05D007042 7.2e-17 89.7 47 91.5
Lalb_Chr07g0181091 Lupinus albus HOM05D005783 ORTHO05D007042 7.2e-17 89.7 47 91.5
Manes.13G035400 Manihot esculenta HOM05D005783 ORTHO05D007042 7.2e-17 89.7 47 91.5
Nitab4.5_0000326g0120 Nicotiana tabacum HOM05D005783 ORTHO05D007042 7.2e-17 89.7 47 91.5
Nitab4.5_0005593g0040 Nicotiana tabacum HOM05D005783 ORTHO05D007042 7.2e-17 89.7 47 91.5
TWI18G0071 Tripterygium wilfordii HOM05D005783 ORTHO05D007042 7.2e-17 89.7 47 91.5
Actinidia09533 Actinidia chinensis HOM05D000063 ORTHO05D002147 9.5e-17 89.4 47 89.4
CANSAT01G1988 Cannabis sativa HOM05D005783 ORTHO05D007042 9.5e-17 89.4 47 91.5
ClCG07G001140 Citrullus lanatus HOM05D005783 ORTHO05D007042 9.5e-17 89.4 47 91.5
Potri.005G226300 Populus trichocarpa HOM05D005783 ORTHO05D007042 9.5e-17 89.4 47 89.4
Sabra05G0174700 Salix brachista HOM05D005783 ORTHO05D007042 9.5e-17 89.4 47 89.4
Sp3g33690 Schrenkiella parvula HOM05D005783 ORTHO05D007042 9.5e-17 89.4 47 89.4
Thecc.06G145600 Theobroma cacao HOM05D005783 ORTHO05D007042 9.5e-17 89.4 47 91.5
TWI75G0260 Tripterygium wilfordii HOM05D005783 ORTHO05D007042 1.2e-16 89.0 47 91.5
TAR633G0770 Trochodendron aralioides HOM05D005783 ORTHO05D007042 1.2e-16 89.0 47 91.5
Gohir.D06G144100 Gossypium hirsutum HOM05D005783 ORTHO05D007042 1.6e-16 88.6 47 89.4
MD10G1181400 Malus domestica HOM05D005783 ORTHO05D007042 1.6e-16 88.6 47 89.4
Nitab4.5_0007062g0060 Nicotiana tabacum HOM05D005783 ORTHO05D007042 1.6e-16 88.6 47 89.4
SalBow6G4406 Salvia bowleyana HOM05D005783 ORTHO05D007042 1.6e-16 88.6 47 89.4
unitig_60.g25746 Utricularia gibba HOM05D005783 ORTHO05D007042 1.6e-16 88.6 47 91.5
CSS0031432 Camellia sinensis var. sinensis HOM05D005783 ORTHO05D007042 2.1e-16 88.2 47 89.4
CAN.G1366.15 Capsicum annuum HOM05D005783 ORTHO05D007042 2.1e-16 88.2 47 89.4
CAN.G812.22 Capsicum annuum HOM05D005783 ORTHO05D007042 2.1e-16 88.2 47 89.4
Lsat_1_v5_gn_9_10421 Lactuca sativa HOM05D005783 ORTHO05D007042 2.1e-16 88.2 47 89.4
Lj4g0020381 Lotus japonicus HOM05D005783 ORTHO05D007042 2.1e-16 88.2 47 91.5
Glyma.19G165900 Glycine max HOM05D005783 ORTHO05D007042 2.8e-16 87.8 47 89.4
Rhsim01G0263700 Rhododendron simsii HOM05D005783 ORTHO05D007042 2.8e-16 87.8 47 89.4
EL10As5g23481 Beta vulgaris HOM05D005783 ORTHO05D007042 4.7e-16 87.0 47 89.4
Thhalv10002146m.g Eutrema salsugineum HOM05D005783 ORTHO05D007042 4.7e-16 87.0 47 85.1
Peaxi162Scf00624g00036 Petunia axillaris HOM05D005783 ORTHO05D007042 4.7e-16 87.0 47 87.2
Aa31LG8G17440 Aethionema arabicum HOM05D006747 ORTHO05D008384 6.1e-16 86.7 45 88.9
ECA247G3893 Erigeron canadensis HOM05D005783 ORTHO05D007042 6.1e-16 86.7 44 93.2
HanXRQChr09g0254261 Helianthus annuus HOM05D005783 ORTHO05D007042 6.1e-16 86.7 47 89.4
Aqoxy3G02728 Aquilegia oxysepala HOM05D005783 ORTHO05D007042 8.0e-16 86.3 47 89.4
BcaC07g41214 Brassica carinata HOM05D005783 ORTHO05D007042 8.0e-16 86.3 47 85.1
A09p58870 Brassica napus HOM05D005783 ORTHO05D007042 8.0e-16 86.3 47 85.1
C08p42200 Brassica napus HOM05D005783 ORTHO05D007042 8.0e-16 86.3 47 85.1
BolC8t51779H Brassica oleracea HOM05D005783 ORTHO05D007042 8.0e-16 86.3 47 85.1
BraA09t41273Z Brassica rapa HOM05D005783 ORTHO05D007042 8.0e-16 86.3 47 85.1
Duzib235G0343 Durio zibethinus HOM05D005783 ORTHO05D007042 8.0e-16 86.3 47 87.2
Migut.N02211 Erythranthe guttata HOM05D005783 ORTHO05D007042 8.0e-16 86.3 47 89.4
Lsat_1_v5_gn_5_182900 Lactuca sativa HOM05D005783 ORTHO05D007042 8.0e-16 86.3 47 89.4
MBI07_g16905_MAGBIO Magnolia biondii HOM05D005783 ORTHO05D007042 8.0e-16 86.3 47 87.2
MD05G1194800 Malus domestica HOM05D005783 ORTHO05D007042 8.0e-16 86.3 47 87.2
Hund02922 Selenicereus undatus HOM05D005783 ORTHO05D007042 8.0e-16 86.3 47 89.4
Prupe.8G221500 Prunus persica HOM05D005783 ORTHO05D007042 1.0e-15 85.9 47 87.2
THA.LOC104814520 Tarenaya hassleriana HOM05D005783 ORTHO05D007042 1.0e-15 85.9 47 89.4
Nitab4.5_0006107g0020 Nicotiana tabacum HOM05D005783 ORTHO05D007042 1.4e-15 85.5 45 88.9
GSVIVG01033693001 Vitis vinifera HOM05D005783 ORTHO05D007042 1.4e-15 85.5 47 87.2
Solyc09g066500.4 Solanum lycopersicum HOM05D005783 ORTHO05D007042 1.8e-15 85.1 47 87.2
PGSC0003DMG400010293 Solanum tuberosum HOM05D005783 ORTHO05D007042 1.8e-15 85.1 47 87.2
CSS0015227 Camellia sinensis var. sinensis HOM05D005783 ORTHO05D007042 2.3e-15 84.7 47 87.2
Cfa013045 Carpinus fangiana HOM05D005783 ORTHO05D007042 2.3e-15 84.7 47 87.2
PGSC0003DMG400025503 Solanum tuberosum HOM05D005783 ORTHO05D007042 2.3e-15 84.7 47 85.1
HPP92_023430 Vanilla planifolia HOM05D005783 ORTHO05D007042 2.3e-15 84.7 47 85.1
Ciclev10023246m.g Citrus clementina HOM05D005783 ORTHO05D007042 3.0e-15 84.3 47 85.1
HanXRQChr10g0280801 Helianthus annuus HOM05D005783 ORTHO05D007042 3.0e-15 84.3 47 87.2
Sed0004262 Sechium edule HOM05D005783 ORTHO05D007042 3.0e-15 84.3 47 87.2
BcaB03g16843 Brassica carinata HOM05D005783 ORTHO05D007042 4.0e-15 84.0 47 83.0
BcaC06g36737 Brassica carinata HOM05D005783 ORTHO05D007042 4.0e-15 84.0 47 83.0
A07p00260 Brassica napus HOM05D005783 ORTHO05D007042 4.0e-15 84.0 47 83.0
C07p00540 Brassica napus HOM05D005783 ORTHO05D007042 4.0e-15 84.0 47 83.0
BraA07t27818Z Brassica rapa HOM05D005783 ORTHO05D007042 4.0e-15 84.0 47 83.0
Cc08_g00200 Coffea canephora HOM05D005783 ORTHO05D007042 4.0e-15 84.0 47 87.2
THA.LOC104804047 Tarenaya hassleriana HOM05D005783 ORTHO05D007042 4.0e-15 84.0 47 87.2
BcaB08g34911 Brassica carinata HOM05D005783 ORTHO05D007042 5.2e-15 83.6 47 83.0
BcaC04g22786 Brassica carinata HOM05D005783 ORTHO05D007042 5.2e-15 83.6 47 83.0
A09p12910 Brassica napus HOM05D005783 ORTHO05D007042 5.2e-15 83.6 47 83.0
C09p15300 Brassica napus HOM05D005783 ORTHO05D007042 5.2e-15 83.6 47 83.0
BraA09t36936Z Brassica rapa HOM05D005783 ORTHO05D007042 5.2e-15 83.6 47 83.0
Sed0003492 Sechium edule HOM05D005783 ORTHO05D007042 6.8e-15 83.2 47 85.1
PSO210G0272 Papaver somniferum HOM05D005783 ORTHO05D007042 8.9e-15 82.8 47 85.1
PSO210G6011 Papaver somniferum HOM05D005783 ORTHO05D007042 8.9e-15 82.8 47 85.1
PSO386G0180 Papaver somniferum HOM05D005783 ORTHO05D007042 8.9e-15 82.8 47 85.1
PSO386G0258 Papaver somniferum HOM05D005783 ORTHO05D007042 8.9e-15 82.8 47 85.1
Atru.chr5.1729 Acer truncatum HOM05D005783 ORTHO05D007042 1.2e-14 82.4 41 95.1
Haze_21406 Corylus avellana HOM05D005783 ORTHO05D007042 2.0e-14 81.6 45 86.7
Gohir.A06G139500 Gossypium hirsutum HOM05D005783 ORTHO05D007042 2.6e-14 81.3 47 85.1
Os02g0618250 Oryza sativa ssp. japonica HOM05D005783 ORTHO05D007042 2.6e-14 81.3 47 83.0
Atru.chr12.1356 Acer truncatum HOM05D005783 ORTHO05D007042 4.4e-14 80.5 41 90.2
Medtr7g097110 Medicago truncatula HOM05D005783 ORTHO05D007042 5.7e-14 80.1 47 83.0
FAN15G2862 Fragaria x ananassa HOM05D005783 ORTHO05D007042 7.5e-14 79.7 69 63.8
Medtr8g069770 Medicago truncatula HOM05D005783 ORTHO05D007042 9.8e-14 79.3 47 80.9
SEGI_26494 Sequoiadendron giganteum HOM05D005783 ORTHO05D007042 2.8e-13 77.8 47 78.7
FAN27G1156 Fragaria x ananassa HOM05D005783 ORTHO05D007042 1.8e-12 75.1 81 54.3
Pp3c19_4700 Physcomitrium patens HOM05D005783 ORTHO05D007042 3.2e-12 74.3 47 72.3
SalBow6G1359 Salvia bowleyana HOM05D005783 ORTHO05D007042 3.2e-12 74.3 73 57.5
SMO133G0019 Selaginella moellendorffii HOM05D005783 ORTHO05D007042 3.2e-12 74.3 47 70.2
BolC7t40500H Brassica oleracea HOM05D005783 ORTHO05D007042 5.4e-12 73.6 60 63.3
BcaC03g16291 Brassica carinata HOM05D005783 ORTHO05D007042 7.0e-12 73.2 51 68.6
BolC9t54438H Brassica oleracea HOM05D005783 ORTHO05D007042 1.7e-10 68.6 75 52.0
Mapoly0081s0079 Marchantia polymorpha HOM05D005783 ORTHO05D007042 3.9e-10 67.4 47 66.0
MCO03G241 Micromonas commoda HOM05D005783 ORTHO05D007042 3.9e-10 67.4 41 75.6
MELO3C033129.2 Cucumis melo HOM05D005783 ORTHO05D007042 8.6e-10 66.2 47 76.6
FAN24G2571 Fragaria x ananassa HOM05D005783 ORTHO05D007042 1.1e-09 65.9 33 93.9
PRCOL_00002782 Prasinoderma coloniale HOM05D005783 ORTHO05D007042 1.1e-09 65.9 41 73.2
Cre05.g237700 Chlamydomonas reinhardtii HOM05D005783 ORTHO05D007042 1.9e-09 65.1 43 67.4
CSS0019928 Camellia sinensis var. sinensis HOM05D005783 ORTHO05D007042 1.6e-08 62.0 44 72.7
SGA_v2.0_scaffold1G00624 Striga asiatica HOM05D003718 ORTHO05D004402 4.7e-08 60.5 29 96.6
CSS0014186 Camellia sinensis var. sinensis HOM05D005783 ORTHO05D007042 1.0e-07 59.3 52 65.4
Duzib192G0414 Durio zibethinus HOM05D005783 ORTHO05D007042 6.8e-07 56.6 36 80.6


User provided reference genes

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